FFCP PHASE1:Hg19::chr5:73981050..73981064,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3074 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4879 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=19bp_to_ENST00000515528_5end | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_1_at_HEXB_5end | |||
|id=chr5:73981050..73981064,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.76e-32!76;CL:0000557!4.25e-31!71;CL:0002194!4.92e-30!63;CL:0000576!4.92e-30!63;CL:0000040!4.92e-30!63;CL:0000559!4.92e-30!63;CL:0002009!1.64e-29!65;CL:0000839!2.34e-28!70;CL:0002057!2.34e-23!42;CL:0000144!5.20e-23!625;CL:0000860!1.76e-22!45;CL:0002371!3.35e-22!591;CL:0000012!1.28e-19!682;CL:0000063!2.17e-19!578;CL:0000548!2.44e-19!679;CL:0000004!2.44e-19!679;CL:0000255!2.44e-19!679;CL:0000048!5.25e-19!430;CL:0000723!1.87e-17!436;CL:0000134!1.24e-16!358;CL:0000034!1.31e-16!444;CL:0002320!8.80e-16!365;CL:0000763!9.25e-16!112;CL:0000049!9.25e-16!112;CL:0000219!2.49e-14!390;CL:0000003!4.70e-11!722;CL:0000213!5.28e-08!57;CL:0000215!5.28e-08!57;CL:0000115!1.50e-07!35;CL:0002139!3.30e-07!24;CL:0000222!8.98e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.94e-19;39!CL:0000234;1.94e-19;39!CL:0000860;4.66e-19;33!CL:0002057;4.66e-19;33!CL:0000576;1.13e-16;48!CL:0000766;3.40e-14;69!CL:0002139;3.43e-07;24!CL:0000115;7.01e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.60e-33,72;CL:0000557,1.02e-31,67;CL:0002194,8.88e-31,59;CL:0000576,8.88e-31,59;CL:0000040,8.88e-31,59;CL:0000559,8.88e-31,59;CL:0002009,3.45e-30,61;CL:0000839,6.82e-29,66;CL:0000473,1.72e-27,48;CL:0000234,1.72e-27,48;CL:0000860,2.34e-23,42;CL:0002057,2.34e-23,42;CL:0000048,8.31e-19,427;CL:0000723,2.92e-17,433;CL:0000034,2.04e-16,441;CL:0000134,2.58e-16,354;CL:0000763,1.14e-15,108;CL:0000049,1.14e-15,108;CL:0002320,1.82e-15,361;CL:0000219,5.11e-14,386;CL:0000213,3.77e-08,58;CL:0000215,3.77e-08,58;CL:0000115,1.09e-07,36;CL:0002139,3.30e-07,24;CL:0000222,5.12e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;4.18e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!4.14e-30!86;UBERON:0004765!5.54e-30!101;UBERON:0001434!5.54e-30!101;UBERON:0002371!6.61e-30!80;UBERON:0002405!2.30e-24!115;UBERON:0002204!3.65e-24!167;UBERON:0002193!2.23e-23!112;UBERON:0002390!3.58e-22!102;UBERON:0003061!3.58e-22!102;UBERON:0000926!4.35e-21!448;UBERON:0004120!4.35e-21!448;UBERON:0006603!4.35e-21!448;UBERON:0003081!4.18e-20!216;UBERON:0002384!1.04e-15!375;UBERON:0000480!1.34e-07!626;UBERON:0000467!1.42e-07!625 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.78e-30,82;UBERON:0002371,2.42e-30,76;UBERON:0004765,2.07e-29,90;UBERON:0001434,3.28e-29,100;UBERON:0002405,6.17e-27,93;UBERON:0002204,1.06e-23,167;UBERON:0002193,2.11e-23,108;UBERON:0002390,3.17e-22,98;UBERON:0003061,3.17e-22,98;UBERON:0000926,6.75e-22,315;UBERON:0004120,6.75e-22,315;UBERON:0006603,6.75e-22,315;UBERON:0003081,1.76e-21,203;UBERON:0002384,2.16e-15,371 | |||
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| |||
|short_description=p1@HEXB | |||
}} |
Revision as of 05:57, 22 January 2014
Short description: | p1@HEXB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HEXB_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 19bp_to_ENST00000515528_5end |
EntrezGene: | HEXB |
HGNC: | 4879 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.60e-33 | 72 |
granulocyte monocyte progenitor cell | 1.02e-31 | 67 |
monopoietic cell | 8.88e-31 | 59 |
monocyte | 8.88e-31 | 59 |
monoblast | 8.88e-31 | 59 |
promonocyte | 8.88e-31 | 59 |
macrophage dendritic cell progenitor | 3.45e-30 | 61 |
myeloid lineage restricted progenitor cell | 6.82e-29 | 66 |
defensive cell | 1.72e-27 | 48 |
phagocyte | 1.72e-27 | 48 |
classical monocyte | 2.34e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.34e-23 | 42 |
multi fate stem cell | 8.31e-19 | 427 |
somatic stem cell | 2.92e-17 | 433 |
stem cell | 2.04e-16 | 441 |
mesenchymal cell | 2.58e-16 | 354 |
myeloid cell | 1.14e-15 | 108 |
common myeloid progenitor | 1.14e-15 | 108 |
connective tissue cell | 1.82e-15 | 361 |
motile cell | 5.11e-14 | 386 |
lining cell | 3.77e-08 | 58 |
barrier cell | 3.77e-08 | 58 |
endothelial cell | 1.09e-07 | 36 |
endothelial cell of vascular tree | 3.30e-07 | 24 |
mesodermal cell | 5.12e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.78e-30 | 82 |
bone marrow | 2.42e-30 | 76 |
skeletal element | 2.07e-29 | 90 |
skeletal system | 3.28e-29 | 100 |
immune system | 6.17e-27 | 93 |
musculoskeletal system | 1.06e-23 | 167 |
hemolymphoid system | 2.11e-23 | 108 |
hematopoietic system | 3.17e-22 | 98 |
blood island | 3.17e-22 | 98 |
mesoderm | 6.75e-22 | 315 |
mesoderm-derived structure | 6.75e-22 | 315 |
presumptive mesoderm | 6.75e-22 | 315 |
lateral plate mesoderm | 1.76e-21 | 203 |
connective tissue | 2.16e-15 | 371 |