FFCP PHASE1:Hg19::chr12:52541319..52541358,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:52541319..52541358,+ to FFCP PHASE1:Hg19::chr12:52541319..52541358,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:52541319..52541358,+ | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_at_chr12:52541319..52541358,+ | |||
|id=chr12:52541319..52541358,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-27!254;CL:0000076!1.09e-13!62;CL:0000063!4.49e-12!578;CL:0002076!1.01e-11!43;CL:0000860!1.32e-11!45;CL:0000548!4.51e-10!679;CL:0000004!4.51e-10!679;CL:0000255!4.51e-10!679;CL:0002057!5.59e-10!42;CL:0000012!1.42e-09!682;CL:0002368!1.26e-07!13;CL:0000223!3.12e-07!59;CL:0000220!3.43e-07!246;CL:0002321!7.23e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.67e-15;33!CL:0002057;5.67e-15;33!CL:0000473;6.51e-10;39!CL:0000234;6.51e-10;39!CL:0000071;1.24e-08;18!CL:0002202;3.30e-08;9!CL:0002632;3.30e-08;9!CL:0000576;1.98e-07;48!CL:0002368;6.53e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.75e-19,253;CL:0000860,1.94e-13,42;CL:0002057,1.94e-13,42;CL:0000076,2.43e-12,63;CL:0000473,7.04e-11,48;CL:0000234,7.04e-11,48;CL:0000071,7.89e-09,18;CL:0002546,7.89e-09,18;CL:0002009,8.84e-09,61;CL:0002202,3.93e-08,9;CL:0002632,3.93e-08,9;CL:0000557,2.12e-07,67;CL:0002194,2.12e-07,59;CL:0000576,2.12e-07,59;CL:0000040,2.12e-07,59;CL:0000559,2.12e-07,59;CL:0002368,7.65e-07,13 | |||
|ontology_enrichment_development_v019=CL:0002057;4.26e-11;42!CL:0002546;1.24e-08;18 | |||
|ontology_enrichment_disease=DOID:305!2.97e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.44e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000467!9.46e-14!625;UBERON:0000480!1.46e-13!626;UBERON:0000468!3.85e-13!659;UBERON:0000062!5.88e-10!511;UBERON:0000926!5.51e-09!448;UBERON:0004120!5.51e-09!448;UBERON:0006603!5.51e-09!448;UBERON:0004119!1.12e-08!169;UBERON:0000925!1.12e-08!169;UBERON:0006595!1.12e-08!169;UBERON:0000923!1.12e-08!604;UBERON:0005291!1.12e-08!604;UBERON:0006598!1.12e-08!604;UBERON:0002532!1.12e-08!604;UBERON:0002050!1.58e-08!605;UBERON:0005423!1.58e-08!605;UBERON:0000922!4.18e-08!612;UBERON:0001004!5.89e-08!72;UBERON:0001737!1.41e-07!9;UBERON:0000065!4.43e-07!53;UBERON:0000487!5.06e-07!22;UBERON:0005631!8.78e-07!14;UBERON:0000158!8.78e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.34e-13;9!UBERON:0001557;2.34e-13;9!UBERON:0000487;5.52e-09;22!UBERON:0004638;1.24e-08;18!UBERON:0001986;1.24e-08;18!UBERON:0004852;1.24e-08;18!UBERON:0000072;4.42e-08;37!UBERON:0000490;4.82e-08;33!UBERON:0000065;1.01e-07;44!UBERON:0006914;1.74e-07;25!UBERON:0001987;8.24e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.51e-13,9;UBERON:0008947,1.49e-09,38;UBERON:0003258,1.49e-09,38;UBERON:0001557,3.81e-09,19;UBERON:0000487,4.08e-09,22;UBERON:0004638,7.89e-09,18;UBERON:0001986,7.89e-09,18;UBERON:0004852,7.89e-09,18;UBERON:0003081,9.03e-09,203;UBERON:0000072,1.37e-08,47;UBERON:0000065,1.86e-08,54;UBERON:0006914,1.34e-07,25;UBERON:0005631,1.65e-07,14;UBERON:0000158,1.65e-07,14;UBERON:0005423,4.11e-07,581;UBERON:0001004,4.59e-07,74;UBERON:0002050,5.60e-07,564;UBERON:0001987,6.98e-07,4;UBERON:0004340,6.98e-07,4;UBERON:0000923,7.12e-07,560;UBERON:0010316,7.12e-07,560;UBERON:0005291,7.12e-07,560;UBERON:0006598,7.12e-07,560;UBERON:0010317,7.12e-07,560;UBERON:0002532,7.12e-07,560 | |||
|phase1_expression=0.54503513781167,0,0.281908808191942,0,0,0.872338524100369,0,0,0,0.245733936501509,3.48900583986214,1.52908960491121,0.527533956456907,0.37129905888014,0,0,1.20538905604795,0,0.487932798790507,0.61560529038394,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0,0,0,0.393364276848904,0,1.70297735647684,2.75826367343678,6.32532429434325,5.54631015250181,0,0,0,0.553995408531877,1.60435557976113,1.30206522429511,0,0,0,1.59938062657521,1.51150377475524,1.21292030593908,4.18372266430232,2.46700732813095,1.54853185447552,2.58923153089935,2.56160706529101,1.18241114944293,1.72372840368309,2.5819387343353,2.70852973188684,1.88242339542605,0.545812300115692,1.34834090667051,2.14258724659632,1.28371610830437,0,0.659702600373432,0.997318288108159,0.852449501065388,1.45104619314292,1.13477044938228,0,2.00998932205395,3.65038042894141,3.69221035998698,1.21079900526674,1.47311054395026,0.632924774881769,0,0.425208599930087,0,0.22465726229299,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0.795285947051099,0,0.472674085820339,0,0.790513071238134,0,1.09288586487763,3.33705998505986,0,0,0,0,0.571994910780128,0,1.78886166630035,3.4409383804245,1.04142150482278,1.13061588384802,0.838998872419812,1.92582629358047,2.71693456497854,0,0,0,1.20848795132744,2.28081631715554,0,1.83831540172934,0.81014194788176,0,0,0.112611480483322,12.2653309972707,4.74632829784064,1.83201743930407,0,0,2.18047026071267,0,0.12663051166458,1.05927344650575,0.286836620748814,0,0,1.06748995729705,1.2333377420858,0,0.134710672069688,0.490385709340376,0.151357427644931,0,0,0,0,0.149448680551801,0.587172493218824,0,0.702254033511242,0.204154171254893,0.245668634623536,0.309977343527296,0,0,0,0.718618141816238,0.168336113954066,0.250237039743928,0.554128230968366,0.877955241761676,0.30648779579902,0.45071417671979,0.453728732640084,0.717558542755448,0.640672166455702,0.211931901159562,0.300091096084402,0.412210116953756,0.515281080091258,0.18611685633159,0.168776332241266,0.0974370051611986,0.252433774244115,0.276149695926898,0.646584227275248,0.355009592516614,0.201504196455281,0.847802961552438,1.35282597214308,1.90922284413584,1.43402297694502,0,0,0,0,0,0,0,0,1.38134921352481,0,0,3.90412440131485,3.87744787179634,2.6511213287183,3.52940712743661,3.92182999366331,3.79632990577755,2.02246962240247,2.5508790466295,2.69323009862473,0,0,0,1.47008711385542,0,0,0,0,0.491953754172454,0.171567810298526,0.658501712451753,4.49607013030478,3.61904300681871,1.574003567695,0.325808305310325,0,0,0.34779121492523,0.117408694235822,0.577465791044295,0.925971025153221,0,12.6432703673484,12.8772924314231,0,0,0,0,1.17587489739202,0.850650583454319,1.25381931783988,1.74380363108377,6.9008882249738,0,0,0.207328115540772,0,0.37872730027914,0,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0,0.336393253036082,0,0.07333828582095,0,0,0,0.531876233169741,0,0.514414748524284,0,0,0,0,0.823240336780769,0.325736184293735,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0.239624855491583,0,0,0,0,0.358121926479791,0,0.197030760201927,0,0,0,0,1.54657762555539,0.167516265334349,0,0,0,0,0,0,0,0,0,0.946214490203608,0.234282829985426,0.601892199455438,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0.647142602455851,0,5.15316871458641,3.32870879020994,4.23346410661552,0.248107807818777,0.153461973288062,0.561320188866147,0.128139149255701,0,0.160853921143607,0,0,0.177561725313127,0.0821271560138091,1.03850885836724,0,0.362578348774867,0.200506470303285,0.736647911487171,0.229628896329213,0.182091168006717,0,0.902399225814824,0.847168708148562,1.56869953835371,2.92278449306521,0.316654886678627,0,0.170093705276516,0.215915916102139,1.54227252690289,0.812839312631559,0.501689773854853,0.254876273045038,0.831076008928724,1.11937377361089,0,0,0.769350375349168,0.328014645699706,0.325378394664303,0.824328093181778,0.54941678891006,0.165018999841176,1.14853107599234,1.30012049207304,1.6068392984416,0,0.154048617114644,0.460511024178389,0.413509717453592,0,0.145016693914229,0.0852266274161009,0.267096106940212,0.495854746082934,0.768760269460425,4.08360679982669,0.910420027699949,0,0.31481234683064,1.3940745403212,0,0,1.73986598415015,0.37064843820784,0,0.744316738719335,0,0,0,0,0,3.13979456079692,0,0,0,0.202182481573316,0,0,0.48763373908959,0.243713489631284,2.11300293513511,0.136499911407986,0.141405431953713,0,1.10273068709225,1.32687795048244,0.438450885253763,0,0,0.405820753925408,0.92947049429925,2.25356482025793,0,0,0.35667105148125,0.354761064070598,0,0,0,0.699869440489966,2.59799704358883,10.0545341330368,18.5114674264248,0.564862804660675,0.43050537267123,1.68471475667626,2.21715076768338,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,0,0.222886768554957,0.852408440419239,2.3874448473769,1.78178808499583,6.14321404198464,0,0,0.333926115068718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|phase1_expression=0.54503513781167,0,0.281908808191942,0,0,0.872338524100369,0,0,0,0.245733936501509,3.48900583986214,1.52908960491121,0.527533956456907,0.37129905888014,0,0,1.20538905604795,0,0.487932798790507,0.61560529038394,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0,0,0,0.393364276848904,0,1.70297735647684,2.75826367343678,6.32532429434325,5.54631015250181,0,0,0,0.553995408531877,1.60435557976113,1.30206522429511,0,0,0,1.59938062657521,1.51150377475524,1.21292030593908,4.18372266430232,2.46700732813095,1.54853185447552,2.58923153089935,2.56160706529101,1.18241114944293,1.72372840368309,2.5819387343353,2.70852973188684,1.88242339542605,0.545812300115692,1.34834090667051,2.14258724659632,1.28371610830437,0,0.659702600373432,0.997318288108159,0.852449501065388,1.45104619314292,1.13477044938228,0,2.00998932205395,3.65038042894141,3.69221035998698,1.21079900526674,1.47311054395026,0.632924774881769,0,0.425208599930087,0,0.22465726229299,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0.795285947051099,0,0.472674085820339,0,0.790513071238134,0,1.09288586487763,3.33705998505986,0,0,0,0,0.571994910780128,0,1.78886166630035,3.4409383804245,1.04142150482278,1.13061588384802,0.838998872419812,1.92582629358047,2.71693456497854,0,0,0,1.20848795132744,2.28081631715554,0,1.83831540172934,0.81014194788176,0,0,0.112611480483322,12.2653309972707,4.74632829784064,1.83201743930407,0,0,2.18047026071267,0,0.12663051166458,1.05927344650575,0.286836620748814,0,0,1.06748995729705,1.2333377420858,0,0.134710672069688,0.490385709340376,0.151357427644931,0,0,0,0,0.149448680551801,0.587172493218824,0,0.702254033511242,0.204154171254893,0.245668634623536,0.309977343527296,0,0,0,0.718618141816238,0.168336113954066,0.250237039743928,0.554128230968366,0.877955241761676,0.30648779579902,0.45071417671979,0.453728732640084,0.717558542755448,0.640672166455702,0.211931901159562,0.300091096084402,0.412210116953756,0.515281080091258,0.18611685633159,0.168776332241266,0.0974370051611986,0.252433774244115,0.276149695926898,0.646584227275248,0.355009592516614,0.201504196455281,0.847802961552438,1.35282597214308,1.90922284413584,1.43402297694502,0,0,0,0,0,0,0,0,1.38134921352481,0,0,3.90412440131485,3.87744787179634,2.6511213287183,3.52940712743661,3.92182999366331,3.79632990577755,2.02246962240247,2.5508790466295,2.69323009862473,0,0,0,1.47008711385542,0,0,0,0,0.491953754172454,0.171567810298526,0.658501712451753,4.49607013030478,3.61904300681871,1.574003567695,0.325808305310325,0,0,0.34779121492523,0.117408694235822,0.577465791044295,0.925971025153221,0,12.6432703673484,12.8772924314231,0,0,0,0,1.17587489739202,0.850650583454319,1.25381931783988,1.74380363108377,6.9008882249738,0,0,0.207328115540772,0,0.37872730027914,0,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0,0.336393253036082,0,0.07333828582095,0,0,0,0.531876233169741,0,0.514414748524284,0,0,0,0,0.823240336780769,0.325736184293735,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0.239624855491583,0,0,0,0,0.358121926479791,0,0.197030760201927,0,0,0,0,1.54657762555539,0.167516265334349,0,0,0,0,0,0,0,0,0,0.946214490203608,0.234282829985426,0.601892199455438,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0.647142602455851,0,5.15316871458641,3.32870879020994,4.23346410661552,0.248107807818777,0.153461973288062,0.561320188866147,0.128139149255701,0,0.160853921143607,0,0,0.177561725313127,0.0821271560138091,1.03850885836724,0,0.362578348774867,0.200506470303285,0.736647911487171,0.229628896329213,0.182091168006717,0,0.902399225814824,0.847168708148562,1.56869953835371,2.92278449306521,0.316654886678627,0,0.170093705276516,0.215915916102139,1.54227252690289,0.812839312631559,0.501689773854853,0.254876273045038,0.831076008928724,1.11937377361089,0,0,0.769350375349168,0.328014645699706,0.325378394664303,0.824328093181778,0.54941678891006,0.165018999841176,1.14853107599234,1.30012049207304,1.6068392984416,0,0.154048617114644,0.460511024178389,0.413509717453592,0,0.145016693914229,0.0852266274161009,0.267096106940212,0.495854746082934,0.768760269460425,4.08360679982669,0.910420027699949,0,0.31481234683064,1.3940745403212,0,0,1.73986598415015,0.37064843820784,0,0.744316738719335,0,0,0,0,0,3.13979456079692,0,0,0,0.202182481573316,0,0,0.48763373908959,0.243713489631284,2.11300293513511,0.136499911407986,0.141405431953713,0,1.10273068709225,1.32687795048244,0.438450885253763,0,0,0.405820753925408,0.92947049429925,2.25356482025793,0,0,0.35667105148125,0.354761064070598,0,0,0,0.699869440489966,2.59799704358883,10.0545341330368,18.5114674264248,0.564862804660675,0.43050537267123,1.68471475667626,2.21715076768338,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,0,0.222886768554957,0.852408440419239,2.3874448473769,1.78178808499583,6.14321404198464,0,0,0.333926115068718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| ||
|short_description=p@chr12:52541319..52541358,+ | |||
}} | }} |
Latest revision as of 09:28, 24 July 2015
Short description: | p@chr12:52541319..52541358, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52541319..52541358, + |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.75e-19 | 253 |
classical monocyte | 1.94e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.94e-13 | 42 |
squamous epithelial cell | 2.43e-12 | 63 |
defensive cell | 7.04e-11 | 48 |
phagocyte | 7.04e-11 | 48 |
blood vessel endothelial cell | 7.89e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.89e-09 | 18 |
macrophage dendritic cell progenitor | 8.84e-09 | 61 |
epithelial cell of tracheobronchial tree | 3.93e-08 | 9 |
epithelial cell of lower respiratory tract | 3.93e-08 | 9 |
granulocyte monocyte progenitor cell | 2.12e-07 | 67 |
monopoietic cell | 2.12e-07 | 59 |
monocyte | 2.12e-07 | 59 |
monoblast | 2.12e-07 | 59 |
promonocyte | 2.12e-07 | 59 |
respiratory epithelial cell | 7.65e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.51e-13 | 9 |
respiratory primordium | 1.49e-09 | 38 |
endoderm of foregut | 1.49e-09 | 38 |
upper respiratory tract | 3.81e-09 | 19 |
simple squamous epithelium | 4.08e-09 | 22 |
blood vessel endothelium | 7.89e-09 | 18 |
endothelium | 7.89e-09 | 18 |
cardiovascular system endothelium | 7.89e-09 | 18 |
lateral plate mesoderm | 9.03e-09 | 203 |
segment of respiratory tract | 1.37e-08 | 47 |
respiratory tract | 1.86e-08 | 54 |
squamous epithelium | 1.34e-07 | 25 |
extraembryonic membrane | 1.65e-07 | 14 |
membranous layer | 1.65e-07 | 14 |
developing anatomical structure | 4.11e-07 | 581 |
respiratory system | 4.59e-07 | 74 |
embryonic structure | 5.60e-07 | 564 |
placenta | 6.98e-07 | 4 |
allantois | 6.98e-07 | 4 |
germ layer | 7.12e-07 | 560 |
germ layer / neural crest | 7.12e-07 | 560 |
embryonic tissue | 7.12e-07 | 560 |
presumptive structure | 7.12e-07 | 560 |
germ layer / neural crest derived structure | 7.12e-07 | 560 |
epiblast (generic) | 7.12e-07 | 560 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.44e-07 | 106 |