FFCP PHASE1:Hg19::chr14:106653357..106653369,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr14:106653357..106653369,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_at_chr14:106653357..106653369,+ | |description=CAGE_peak_at_chr14:106653357..106653369,+ | ||
|id=chr14:106653357..106653369,+ | |id=chr14:106653357..106653369,+ | ||
|ontology_enrichment_celltype=CL:0000084!7.66e-14!25;CL:0000827!7.66e-14!25;CL:0000842!1.14e-10!3;CL:0002127!3.87e-09!1;CL:0000914!3.87e-09!1;CL:0000911!3.87e-09!1;CL:0000814!3.87e-09!1;CL:0002042!3.87e-09!1;CL:0002039!3.87e-09!1;CL:0002040!3.87e-09!1;CL:0002041!3.87e-09!1;CL:0000946!7.18e-09!1;CL:0000786!7.18e-09!1;CL:0000980!7.18e-09!1;CL:0000224!3.22e-08!4;CL:0000838!4.26e-08!52;CL:0000542!6.36e-08!53;CL:0000051!6.36e-08!53 | |ontology_enrichment_celltype=CL:0000084!7.66e-14!25;CL:0000827!7.66e-14!25;CL:0000842!1.14e-10!3;CL:0002127!3.87e-09!1;CL:0000914!3.87e-09!1;CL:0000911!3.87e-09!1;CL:0000814!3.87e-09!1;CL:0002042!3.87e-09!1;CL:0002039!3.87e-09!1;CL:0002040!3.87e-09!1;CL:0002041!3.87e-09!1;CL:0000946!7.18e-09!1;CL:0000786!7.18e-09!1;CL:0000980!7.18e-09!1;CL:0000224!3.22e-08!4;CL:0000838!4.26e-08!52;CL:0000542!6.36e-08!53;CL:0000051!6.36e-08!53 | ||
|ontology_enrichment_celltype_v019=CL:0002127;7.06e-34;1!CL:0000911;7.06e-34;1!CL:0000814;7.06e-34;1!CL:0000084;1.44e-12;25!CL:0000791;2.70e-08;18!CL:0000789;2.70e-08;18!CL:0002419;2.70e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,5.05e-34,1;CL:0000914,5.05e-34,1;CL:0000911,5.05e-34,1;CL:0000814,5.05e-34,1;CL:0002042,5.05e-34,1;CL:0002039,5.05e-34,1;CL:0002040,5.05e-34,1;CL:0002041,5.05e-34,1;CL:0000893,9.07e-18,2;CL:0002489,9.07e-18,2;CL:0000809,9.07e-18,2;CL:0000808,9.07e-18,2;CL:0000894,9.07e-18,2;CL:0000806,9.07e-18,2;CL:0000807,9.07e-18,2;CL:0000805,9.07e-18,2;CL:0002425,9.07e-18,2;CL:0000084,1.44e-12,25;CL:0000827,1.44e-12,25;CL:0000791,2.61e-08,18;CL:0000789,2.61e-08,18;CL:0002420,2.61e-08,18;CL:0002419,2.61e-08,18;CL:0000790,2.61e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002425;1.07e-17;2!CL:0000790;2.70e-08;18 | |||
|ontology_enrichment_disease=DOID:2531!2.76e-08!51;DOID:0060083!2.76e-08!51;DOID:0060058!2.37e-07!10 | |ontology_enrichment_disease=DOID:2531!2.76e-08!51;DOID:0060083!2.76e-08!51;DOID:0060058!2.37e-07!10 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.13e-27!7;UBERON:0002370!3.35e-18!4;UBERON:0005058!3.35e-18!4;UBERON:0009113!3.35e-18!4;UBERON:0003295!3.35e-18!4;UBERON:0005562!3.35e-18!4;UBERON:0000974!1.47e-12!10;UBERON:0003351!2.58e-12!6;UBERON:0009722!2.32e-11!11;UBERON:0007690!2.32e-11!11;UBERON:0002106!6.61e-11!3;UBERON:0004854!6.61e-11!3;UBERON:0009034!6.61e-11!3;UBERON:0002095!6.61e-11!3;UBERON:0004782!6.61e-11!3;UBERON:0003281!6.61e-11!3;UBERON:0009664!6.61e-11!3;UBERON:0002296!6.61e-11!3;UBERON:0005602!6.61e-11!3;UBERON:0001179!6.61e-11!3;UBERON:0006293!6.61e-11!3;UBERON:0003112!1.05e-08!1;UBERON:0000032!1.05e-08!1;UBERON:0005253!1.05e-08!1;UBERON:0003128!1.05e-08!1;UBERON:0002241!1.05e-08!1;UBERON:0001703!1.05e-08!1;UBERON:0004761!1.05e-08!1;UBERON:0009617!1.05e-08!1;UBERON:0001052!1.85e-08!4;UBERON:0008814!2.31e-08!15;UBERON:0003408!1.43e-07!10;UBERON:0001042!1.43e-07!10;UBERON:0009145!1.43e-07!10;UBERON:0005057!3.39e-07!26;UBERON:0004907!6.27e-07!5;UBERON:0006562!6.39e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.04e-66;2!UBERON:0005058;1.04e-66;2!UBERON:0009113;1.04e-66;2!UBERON:0004177;6.03e-60;5!UBERON:0005057;6.03e-60;5!UBERON:0002106;2.07e-12;3!UBERON:0000077;7.71e-12;27!UBERON:0002405;7.71e-12;27!UBERON:0002390;4.62e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.79e-75,7;UBERON:0005057,1.79e-75,7;UBERON:0002370,2.01e-74,4;UBERON:0005058,2.01e-74,4;UBERON:0009113,2.01e-74,4;UBERON:0003295,2.01e-74,4;UBERON:0005562,2.01e-74,4;UBERON:0003351,5.37e-50,6;UBERON:0000974,2.06e-30,10;UBERON:0003408,2.06e-30,10;UBERON:0001042,2.06e-30,10;UBERON:0009145,2.06e-30,10;UBERON:0006562,9.75e-28,11;UBERON:0009722,9.75e-28,11;UBERON:0007690,9.75e-28,11;UBERON:0000077,7.78e-19,29;UBERON:0008814,2.64e-17,18;UBERON:0001557,1.94e-16,19;UBERON:0002106,2.07e-12,3;UBERON:0004854,2.07e-12,3;UBERON:0009034,2.07e-12,3;UBERON:0002095,2.07e-12,3;UBERON:0004782,2.07e-12,3;UBERON:0003281,2.07e-12,3;UBERON:0009664,2.07e-12,3;UBERON:0002296,2.07e-12,3;UBERON:0005602,2.07e-12,3;UBERON:0001179,2.07e-12,3;UBERON:0006293,2.07e-12,3;UBERON:0004807,2.06e-11,28;UBERON:0002368,2.81e-09,35;UBERON:0000949,2.28e-07,45;UBERON:0000072,4.40e-07,47 | |||
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|short_description=p@chr14:106653357..106653369,+ | |short_description=p@chr14:106653357..106653369,+ | ||
}} | }} |
Latest revision as of 18:44, 24 July 2015
Short description: | p@chr14:106653357..106653369, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr14:106653357..106653369, + |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 5.05e-34 | 1 |
immature NK T cell | 5.05e-34 | 1 |
effector T cell | 5.05e-34 | 1 |
mature NK T cell | 5.05e-34 | 1 |
immature NK T cell stage IV | 5.05e-34 | 1 |
immature NK T cell stage I | 5.05e-34 | 1 |
immature NK T cell stage II | 5.05e-34 | 1 |
immature NK T cell stage III | 5.05e-34 | 1 |
thymocyte | 9.07e-18 | 2 |
double negative thymocyte | 9.07e-18 | 2 |
double-positive, alpha-beta thymocyte | 9.07e-18 | 2 |
DN4 thymocyte | 9.07e-18 | 2 |
DN1 thymic pro-T cell | 9.07e-18 | 2 |
DN2 thymocyte | 9.07e-18 | 2 |
DN3 thymocyte | 9.07e-18 | 2 |
immature single positive thymocyte | 9.07e-18 | 2 |
early T lineage precursor | 9.07e-18 | 2 |
T cell | 1.44e-12 | 25 |
pro-T cell | 1.44e-12 | 25 |
mature alpha-beta T cell | 2.61e-08 | 18 |
alpha-beta T cell | 2.61e-08 | 18 |
immature T cell | 2.61e-08 | 18 |
mature T cell | 2.61e-08 | 18 |
immature alpha-beta T cell | 2.61e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.79e-75 | 7 |
immune organ | 1.79e-75 | 7 |
thymus | 2.01e-74 | 4 |
hemolymphoid system gland | 2.01e-74 | 4 |
thymic region | 2.01e-74 | 4 |
pharyngeal gland | 2.01e-74 | 4 |
thymus primordium | 2.01e-74 | 4 |
pharyngeal epithelium | 5.37e-50 | 6 |
neck | 2.06e-30 | 10 |
gland of gut | 2.06e-30 | 10 |
chordate pharynx | 2.06e-30 | 10 |
pharyngeal region of foregut | 2.06e-30 | 10 |
pharynx | 9.75e-28 | 11 |
entire pharyngeal arch endoderm | 9.75e-28 | 11 |
early pharyngeal endoderm | 9.75e-28 | 11 |
mixed endoderm/mesoderm-derived structure | 7.78e-19 | 29 |
pharyngeal arch system | 2.64e-17 | 18 |
upper respiratory tract | 1.94e-16 | 19 |
spleen | 2.07e-12 | 3 |
gastrointestinal system mesentery | 2.07e-12 | 3 |
stomach region | 2.07e-12 | 3 |
mesentery | 2.07e-12 | 3 |
gastrointestinal system serosa | 2.07e-12 | 3 |
mesentery of stomach | 2.07e-12 | 3 |
gut mesentery | 2.07e-12 | 3 |
dorsal mesentery | 2.07e-12 | 3 |
dorsal mesogastrium | 2.07e-12 | 3 |
peritoneal cavity | 2.07e-12 | 3 |
spleen primordium | 2.07e-12 | 3 |
respiratory system epithelium | 2.06e-11 | 28 |
endocrine gland | 2.81e-09 | 35 |
endocrine system | 2.28e-07 | 45 |
segment of respiratory tract | 4.40e-07 | 47 |