FFCP PHASE1:Hg19::chr19:4581496..4581505,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:4581496..4581505,- | |||
|description=CAGE_peak_at_chr19:4581496..4581505,- | |||
|id=chr19:4581496..4581505,- | |||
|ontology_enrichment_celltype=CL:0002139!3.10e-19!24;CL:0000115!2.10e-17!35;CL:0000071!1.50e-15!18;CL:0002546!1.50e-15!18;CL:0002078!2.32e-14!44;CL:0000213!7.78e-12!57;CL:0000215!7.78e-12!57;CL:1000413!7.49e-11!9;CL:0002544!8.98e-08!6;CL:0002322!3.90e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002545;7.84e-14;2!CL:0000115;2.03e-13;36!CL:0000071;2.21e-12;18!CL:0002139;3.20e-12;24!CL:0002322;1.23e-11;5!CL:1000413;1.62e-11;9!CL:0002078;2.46e-10;45!CL:0000167;1.79e-07;1!CL:0000164;1.79e-07;1!CL:0000502;1.79e-07;1!CL:0000172;1.79e-07;1!CL:0000173;1.79e-07;1!CL:0000188;8.71e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,6.51e-16,36;CL:0002545,5.88e-14,2;CL:0000071,2.20e-12,18;CL:0002546,2.20e-12,18;CL:0002078,2.22e-12,45;CL:0002139,3.66e-12,24;CL:1000413,1.65e-11,9;CL:0002322,1.65e-11,5;CL:0000213,3.23e-09,58;CL:0000215,3.23e-09,58;CL:0000167,1.48e-07,1;CL:0000164,1.48e-07,1;CL:0000502,1.48e-07,1;CL:0000172,1.48e-07,1;CL:0000173,1.48e-07,1;CL:0002351,1.48e-07,1;CL:0000188,8.05e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0006215;7.23e-20;3!CL:0002546;2.21e-12;18!CL:0002351;1.79e-07;1!UBERON:0005425;1.79e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4430;1.79e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.48e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!7.67e-26!82;UBERON:0005743!6.78e-25!86;UBERON:0000073!3.64e-23!94;UBERON:0001016!3.64e-23!94;UBERON:0000955!4.13e-23!69;UBERON:0006238!4.13e-23!69;UBERON:0007023!1.77e-22!115;UBERON:0001049!3.11e-22!57;UBERON:0005068!3.11e-22!57;UBERON:0006241!3.11e-22!57;UBERON:0007135!3.11e-22!57;UBERON:0003075!1.55e-21!86;UBERON:0007284!1.55e-21!86;UBERON:0002616!3.73e-21!59;UBERON:0002346!7.23e-20!90;UBERON:0001869!1.36e-16!32;UBERON:0002020!1.64e-16!34;UBERON:0003528!1.64e-16!34;UBERON:0001893!1.70e-16!34;UBERON:0002780!2.30e-16!41;UBERON:0001890!2.30e-16!41;UBERON:0006240!2.30e-16!41;UBERON:0000025!6.16e-16!194;UBERON:0003080!9.12e-16!42;UBERON:0001986!1.50e-15!18;UBERON:0004638!1.50e-15!18;UBERON:0004852!1.50e-15!18;UBERON:0002791!1.66e-15!33;UBERON:0004111!4.65e-15!241;UBERON:0002619!2.80e-14!22;UBERON:0001950!2.92e-14!20;UBERON:0000477!9.77e-14!286;UBERON:0000487!2.74e-13!22;UBERON:0000483!2.54e-12!309;UBERON:0004121!3.53e-12!169;UBERON:0003056!4.02e-12!61;UBERON:0000119!5.93e-12!312;UBERON:0000956!5.96e-12!25;UBERON:0000203!5.96e-12!25;UBERON:0000153!8.27e-12!129;UBERON:0007811!8.27e-12!129;UBERON:0000033!9.15e-12!123;UBERON:0000924!1.71e-11!173;UBERON:0006601!1.71e-11!173;UBERON:0006914!4.87e-11!25;UBERON:0003915!7.49e-11!9;UBERON:0004700!7.49e-11!9;UBERON:0001917!7.49e-11!9;UBERON:0004732!2.96e-08!13;UBERON:0003076!9.52e-08!15;UBERON:0003057!9.52e-08!15;UBERON:0000922!1.27e-07!612;UBERON:0002021!2.30e-07!5;UBERON:0000468!3.29e-07!659;UBERON:0004733!3.58e-07!12;UBERON:0002028!3.58e-07!12;UBERON:0007277!3.58e-07!12;UBERON:0000481!4.77e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0005800;7.84e-14;2!UBERON:0001515;7.84e-14;2!UBERON:0004638;2.21e-12;18!UBERON:0001986;2.21e-12;18!UBERON:0004852;2.21e-12;18!UBERON:0002021;7.57e-12;5!UBERON:0003915;1.62e-11;9!UBERON:0004700;1.62e-11;9!UBERON:0001917;1.62e-11;9!UBERON:0002037;3.37e-10;6!UBERON:0000487;4.99e-10;22!UBERON:0006914;9.34e-09;25!UBERON:0004732;5.51e-08;13!UBERON:0002581;1.79e-07;1!UBERON:0002902;1.79e-07;1!UBERON:0000941;1.79e-07;1!UBERON:0001785;1.79e-07;1!UBERON:0002464;1.79e-07;1!UBERON:0004904;1.79e-07;1!UBERON:0001021;1.79e-07;1!UBERON:0009899;1.79e-07;1!UBERON:0001950;3.27e-07;20!UBERON:0002680;6.05e-07;9!UBERON:0001895;6.05e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005800,5.88e-14,2;UBERON:0001515,5.88e-14,2;UBERON:0004638,2.20e-12,18;UBERON:0001986,2.20e-12,18;UBERON:0004852,2.20e-12,18;UBERON:0002021,6.79e-12,5;UBERON:0003915,1.65e-11,9;UBERON:0004700,1.65e-11,9;UBERON:0001917,1.65e-11,9;UBERON:0002037,2.89e-10,6;UBERON:0006215,2.89e-10,6;UBERON:0000487,4.96e-10,22;UBERON:0006914,9.29e-09,25;UBERON:0004732,4.67e-08,13;UBERON:0000941,1.39e-07,1;UBERON:0001785,1.39e-07,1;UBERON:0002464,1.39e-07,1;UBERON:0004904,1.39e-07,1;UBERON:0001021,1.39e-07,1;UBERON:0003902,1.39e-07,1;UBERON:0005425,1.39e-07,1;UBERON:0002902,1.58e-07,1;UBERON:0009899,1.58e-07,1;UBERON:0002581,2.31e-07,1;UBERON:0000955,2.95e-07,68;UBERON:0006238,2.95e-07,68;UBERON:0001950,3.65e-07,20;UBERON:0002680,5.47e-07,9;UBERON:0001895,5.47e-07,9;UBERON:0010092,5.47e-07,9;UBERON:0000025,6.08e-07,192 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,0.56530794192401,2.51699661725944,1.10047216776027,0.208994966536811,0.516833518338658,0.71153252537342,0.33472061276467,0.402829317109147,0,3.1728067481262,1.47065232138347,4.0507097394088,0.357198913136319,0.898117490504679,0.450445921933289,3.06633274931766,0,0.916008719652036,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.326923806226917,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34171076742555,0.662648841607426,0.580969714347592,1.34759371519982,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,1.01056513432752,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0.858840442033979,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0,2.05886054286514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0.340187410553031,0.863663664408557,4.62681758070868,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.165018999841176,0,0,0,2.41676795730305,0,0.307007349452259,1.24052915236078,0,0,0.0852266274161009,1.51354460599453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.728163130497081,0,0.284136146806413,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,2.90799823828566,0.927680981618513,0,0,0.0874599999961957,0,0,0,0.236387681767936,0,0.291604613383254,0,0.885741385813839,0.723578631752448,3.05163472634166,1.76926815889959,2.06883333267483,0.658156191461918,0,0,0.230850775511391,0,0,0.0897576444097721,0,0,0,0,0,0.156980256395025,0,0.225595660617181,0.392125068635479,0,0,0,0.210998064528027,0,0,0.216388639742091,0,0,0,0,0,0,0.202203398942031,0,0.468528891450678,0,0,0.971121518136371,0,0,0.61214552326098,0.126373159256976,0,0,0,0.330991955875499,0.941798755221676,0,0.284609546029793,0.277349346026277,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0.822251547880505,0,0.696418755514666,0,0,0.213452994739353,0,0,0.229073192331831,0,0,0.124252535565433,0,0.135904206073614,0.313808538937,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0,0.717873024576814,0,0,0.446342914883745,0.201550417460179,0,0,1.89079637537337,0.988990300573997,0.876246070104404,0.984274815147488,0,0,0.681017030557878,0.160753148465019,0.275078873194468,0,0,0,0.91124334987037,0,0,0.157363764404994,0,0,0.191915197319445,0.714695326373367,0,0.5085370753095,0,0,0,0,0,0,0.226624183040251,0,0,0.517131825446202,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.876336514945499,0,0.443716206147409,0.372578417648301,1.52183498429854,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0.521988583930423,0,0,0,0.179088841081487,0,0.438568099157414,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0.834979926253974,2.8339315265117,1.27707087245721,0.615349092722265,0.756215088665154,1.38314504928436,0.645902582527404,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.150420656698515,0.20170506870352,0.781514011233092,0,0,0,0.945526184657525,0,0.620060389503552,0.570742291745161,1.09394961803644,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.475788130837822,1.18390992413128,0.236387681767936,0,0.078493092850514,0.942693539496011,0,0,0,0,0.142953088353313,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0,0,0,0,0.687051635306701,0,0,0.102662806856247,6.95888658802919,0,0,1.19370465096821,0,0,0,0.150962843566674,0,0,0,0,1.41405928260976,0.196308467114945,0.297046400327086,0,0,0.281951753939561,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0.339957450954573,0.872701380680755,0.5290268405154,0,0,0,0,0,0,0,0,0.459474497674225,0.250707539292375,0.303114792872958,0,0.829169439458779,0.517164979309476,0,0.714193294391221,0.0645889098360061,0,0,0,0.808468755832877,0.217716747896961,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0.366724332548599,0,0.665756774185513,0,0 | |||
|short_description=p@chr19:4581496..4581505,- | |||
}} |
Latest revision as of 14:55, 27 July 2015
Short description: | p@chr19:4581496..4581505, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:4581496..4581505, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 6.51e-16 | 36 |
thoracic aorta endothelial cell | 5.88e-14 | 2 |
blood vessel endothelial cell | 2.20e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.20e-12 | 18 |
meso-epithelial cell | 2.22e-12 | 45 |
endothelial cell of vascular tree | 3.66e-12 | 24 |
endothelial cell of artery | 1.65e-11 | 9 |
embryonic stem cell | 1.65e-11 | 5 |
lining cell | 3.23e-09 | 58 |
barrier cell | 3.23e-09 | 58 |
peptide hormone secreting cell | 1.48e-07 | 1 |
enteroendocrine cell | 1.48e-07 | 1 |
type D enteroendocrine cell | 1.48e-07 | 1 |
somatostatin secreting cell | 1.48e-07 | 1 |
pancreatic D cell | 1.48e-07 | 1 |
progenitor cell of endocrine pancreas | 1.48e-07 | 1 |
cell of skeletal muscle | 8.05e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
segment of aorta | 5.88e-14 | 2 |
thoracic aorta | 5.88e-14 | 2 |
blood vessel endothelium | 2.20e-12 | 18 |
endothelium | 2.20e-12 | 18 |
cardiovascular system endothelium | 2.20e-12 | 18 |
occipital lobe | 6.79e-12 | 5 |
endothelial tube | 1.65e-11 | 9 |
arterial system endothelium | 1.65e-11 | 9 |
endothelium of artery | 1.65e-11 | 9 |
cerebellum | 2.89e-10 | 6 |
rhombic lip | 2.89e-10 | 6 |
simple squamous epithelium | 4.96e-10 | 22 |
squamous epithelium | 9.29e-09 | 25 |
segmental subdivision of nervous system | 4.67e-08 | 13 |
cranial nerve II | 1.39e-07 | 1 |
cranial nerve | 1.39e-07 | 1 |
nerve trunk | 1.39e-07 | 1 |
nerve connecting eye with brain | 1.39e-07 | 1 |
nerve | 1.39e-07 | 1 |
retinal neural layer | 1.39e-07 | 1 |
presumptive neural retina | 1.39e-07 | 1 |
occipital pole | 1.58e-07 | 1 |
pole of cerebral hemisphere | 1.58e-07 | 1 |
postcentral gyrus | 2.31e-07 | 1 |
brain | 2.95e-07 | 68 |
future brain | 2.95e-07 | 68 |
neocortex | 3.65e-07 | 20 |
regional part of metencephalon | 5.47e-07 | 9 |
metencephalon | 5.47e-07 | 9 |
future metencephalon | 5.47e-07 | 9 |
tube | 6.08e-07 | 192 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.48e-07 | 1 |