FFCP PHASE1:Hg19::chr19:4717835..4717853,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:4717835..4717853,- | |||
|description=CAGE_peak_at_chr19:4717835..4717853,- | |||
|id=chr19:4717835..4717853,- | |||
|ontology_enrichment_celltype=CL:0002368!7.36e-14!13;CL:0000066!7.67e-12!254;CL:0000220!2.43e-10!246;CL:0002321!4.60e-10!248;CL:0002202!5.74e-10!9;CL:0002632!5.74e-10!9;CL:0000223!5.86e-09!59;CL:0002076!3.39e-08!43;CL:0000082!7.37e-08!19;CL:0000548!4.39e-07!679;CL:0000004!4.39e-07!679;CL:0000255!4.39e-07!679;CL:0000012!7.72e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.46e-24;13!CL:0002202;4.03e-17;9!CL:0002632;4.03e-17;9!CL:0000082;2.17e-11;19!CL:0000244;2.83e-08;4!CL:0000731;2.83e-08;4!CL:0002076;3.06e-08;42!CL:0000669;8.69e-08;4!CL:0002328;4.67e-07;3!CL:0000307;9.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.43e-24,13;CL:0002202,6.07e-17,9;CL:0002632,6.07e-17,9;CL:0000066,7.51e-13,253;CL:0000082,2.43e-11,19;CL:0002076,4.10e-11,42;CL:0000223,8.89e-09,58;CL:0000244,2.65e-08,4;CL:0000731,2.65e-08,4;CL:0000669,7.35e-08,4;CL:0002328,5.18e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;9.86e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3908;8.33e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,9.31e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005911!9.30e-14!82;UBERON:0005153!2.15e-13!37;UBERON:0005177!1.18e-12!107;UBERON:0005157!1.17e-11!51;UBERON:0000466!3.23e-11!126;UBERON:0000119!3.88e-11!312;UBERON:0005178!1.41e-10!34;UBERON:0002224!1.41e-10!34;UBERON:0000483!3.22e-10!309;UBERON:0002048!3.40e-10!22;UBERON:0000117!3.40e-10!22;UBERON:0000171!3.40e-10!22;UBERON:0000170!3.40e-10!22;UBERON:0005597!3.40e-10!22;UBERON:0000118!3.40e-10!22;UBERON:0000464!4.43e-10!104;UBERON:0005181!4.59e-10!35;UBERON:0002100!7.10e-10!216;UBERON:0000065!3.05e-09!53;UBERON:0009569!6.22e-09!113;UBERON:0001048!1.01e-08!168;UBERON:0004119!1.69e-08!169;UBERON:0000925!1.69e-08!169;UBERON:0006595!1.69e-08!169;UBERON:0008947!1.93e-08!38;UBERON:0003258!1.93e-08!38;UBERON:0007196!5.82e-08!14;UBERON:0001558!5.82e-08!14;UBERON:0004802!7.37e-08!19;UBERON:0000115!7.37e-08!19;UBERON:0004807!1.85e-07!28;UBERON:0000915!3.24e-07!52;UBERON:0003104!6.16e-07!238;UBERON:0009142!6.16e-07!238;UBERON:0001004!6.21e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;1.42e-13;22!UBERON:0000117;1.42e-13;22!UBERON:0000171;1.42e-13;22!UBERON:0000170;1.42e-13;22!UBERON:0004807;1.73e-13;22!UBERON:0004802;2.17e-11;19!UBERON:0000115;2.17e-11;19!UBERON:0005911;2.50e-11;36!UBERON:0005178;4.28e-11;34!UBERON:0002224;4.28e-11;34!UBERON:0005181;2.78e-10;35!UBERON:0000065;1.28e-09;44!UBERON:0007196;1.77e-09;15!UBERON:0001558;1.77e-09;15!UBERON:0004815;4.67e-07;3!UBERON:0002031;4.67e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005153,1.05e-19,37;UBERON:0005157,4.37e-17,47;UBERON:0005911,3.63e-14,82;UBERON:0002048,1.60e-13,22;UBERON:0000117,1.60e-13,22;UBERON:0000171,1.60e-13,22;UBERON:0000170,1.60e-13,22;UBERON:0005597,1.60e-13,22;UBERON:0000118,1.60e-13,22;UBERON:0005177,1.12e-12,101;UBERON:0005178,7.06e-12,34;UBERON:0002224,7.06e-12,34;UBERON:0005181,2.05e-11,35;UBERON:0004802,2.43e-11,19;UBERON:0000115,2.43e-11,19;UBERON:0000065,3.06e-10,54;UBERON:0008947,3.54e-10,38;UBERON:0003258,3.54e-10,38;UBERON:0004807,7.94e-10,28;UBERON:0007196,2.22e-09,15;UBERON:0001558,2.22e-09,15;UBERON:0009569,3.30e-08,112;UBERON:0006554,5.81e-08,47;UBERON:0004119,6.46e-08,160;UBERON:0000925,6.46e-08,160;UBERON:0006595,6.46e-08,160;UBERON:0001004,8.21e-08,74;UBERON:0001008,1.04e-07,48;UBERON:0000915,2.10e-07,52;UBERON:0002100,4.19e-07,199;UBERON:0004815,5.18e-07,3;UBERON:0002031,5.18e-07,3 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0.631719873426831,0,13.2696325710815,41.1702689103732,0,1.05506791291381,0.990130823680373,0.331397375727916,0,0,0,0,0,1.02000345622126,0,0,0,0.125542639594803,0,0,0,0,0,0,6.43594857135249,8.433765725791,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.886917589850256,0.351339142772504,0.130979075497713,1.09288586487763,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0.872188104285069,0.496971951695318,0.379891534993739,0.794455084879313,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0,0,0.163461903113459,0.605429710579726,2.88087962239999,0,0.624320153660641,0,0,0,0,0,0,0,0,0,0,3.64064544775211,3.59309070908119,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,4.25173876959253,0.272746120590835,5.16248271700207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0.38474715694639,0,9.81692416624121,2.8810180793198,0,0,0.982827216677626,0.590789906681404,0,0.491953754172454,0,1.09750285408626,2.24803506515239,0.201057944823262,0,0,1.03993478527958,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,4.20925056703387,9.00965209393282,3.83382679165211,0,0,0,0,0,0,0,0,0,0,0,0,2.01835951821649,0.43596006883328,0.2933531432838,0.129271715757778,0,0,0,1.04007436911366,0,1.41849132023278,0.266422179016099,0.142977993658148,0,0,0,0,0,0.602878754119172,0,0.399891964728228,0,0,0,0.239624855491583,0,0,0.434343920002738,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0,0.178428988797162,0,1.17141414992713,0.601892199455438,0,0,0.664225598535437,0.184369168541703,0,1.76221041716467,2.74514739048685,0,0,0,0,1.66435439510497,0.30239029332968,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0.177561725313127,0.410635780069046,3.11552657510173,0.813472649219715,0,10.8273493963774,3.68323955743585,0,1.0925470080403,0,1.80479845162965,0,2.35304930753057,0,0,0,0,0.215915916102139,0,2.70946437543853,2.00675909541941,0.254876273045038,3.3243040357149,2.91037181138832,0,0,0.512900250232778,0.328014645699706,0,2.26690225624989,0,0,0.574265537996172,0,0,0,0.154048617114644,0.15350367472613,0.275673144969061,0.322260734604821,0,0.511359764496605,0,2.80984356113663,4.22818148203234,6.89108647470754,6.57525575561074,0,0,0,0,1.59691809095107,0,0,0.429374660225974,0.744316738719335,1.2655176988749,1.90630193923825,0.511795582622668,0,0.636406495851874,1.56989728039846,0,0,0,0.606547444719948,0,0,0,0.731140468893853,8.45201174054043,0.409499734223957,0,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0.286822704408103,0.196498082026242,0,0,0,0.329294892959902,0.379473173765715,0,2.4055528181378,2.01090682660736,7.62236894029258,2.54188262097304,8.17960208075337,1.68471475667626,3.10401107475673,2.29723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.84136146806413,0,0,0,0,0,6.01067007123692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,1.45668227720456,0,0,0,0,0,0,5.31723098165748,0.992975867626496,5.33685961292283,2.38944859545918,0,1.24807205711825,0,0,0,0,32.8493322020788,0,0,0,0,0,0,6.02984468445704,0,0,0,2.56508224804908,0,0,0,0,0,1.1524383839052,8.94618256071114,0.235694034616795,8.29015657049046,10.4602846312333,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,1.08089965062721,0,0,0.0824158583811665,0.0674035438541849,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0,0,10.4544333154212,0,7.67660789277781,0,0,0,0,0,0,0,0,19.5946225053235,0,0,1.32506888912221,0,0,0.342173675768659,0.704815022316672,8.1158433551448,0.78602152549833,4.97086866416635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,1.12482367165896,0,0,43.9947082835581,0,0,0,0,0.554805861502613,0,0,0.889811221596536,0,0,0.310874401165561,0.295710299979268,0.63718706865481,0,0.310525913752519,2.90294345488599,6.11435943483388,1.04349012362347,0.150257608997218,1.52322084867518,2.03435366602331,0.181848659202559,0.214821114084977,0,1.59238355479446,11.2007774105683,0,0,1.26184898228651,7.12693372507022,0.428883182749851,0,0,2.08370226891451,0.97894681802587,7.1635536432595,1.85280868296583,0.657852148736121,33.0408702918798,9.45278787527482,0,0,0,2.12701969324168,0,0,0,0,0,0,40.783239808215,0,0,0,34.0509572140102,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0.346576998451015,1.52552838186867,13.1168385951419,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.85524277127016,4.3380246737907,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.79332796050031,0,0,0,0,0,0,0.297046400327086,0.42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| |||
|short_description=p@chr19:4717835..4717853,- | |||
}} |
Latest revision as of 15:20, 27 July 2015
Short description: | p@chr19:4717835..4717853, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:4717835..4717853, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 4.43e-24 | 13 |
epithelial cell of tracheobronchial tree | 6.07e-17 | 9 |
epithelial cell of lower respiratory tract | 6.07e-17 | 9 |
epithelial cell | 7.51e-13 | 253 |
epithelial cell of lung | 2.43e-11 | 19 |
endo-epithelial cell | 4.10e-11 | 42 |
endodermal cell | 8.89e-09 | 58 |
transitional epithelial cell | 2.65e-08 | 4 |
urothelial cell | 2.65e-08 | 4 |
pericyte cell | 7.35e-08 | 4 |
bronchial epithelial cell | 5.18e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelial bud | 1.05e-19 | 37 |
epithelial fold | 4.37e-17 | 47 |
endo-epithelium | 3.63e-14 | 82 |
lung | 1.60e-13 | 22 |
respiratory tube | 1.60e-13 | 22 |
respiration organ | 1.60e-13 | 22 |
pair of lungs | 1.60e-13 | 22 |
lung primordium | 1.60e-13 | 22 |
lung bud | 1.60e-13 | 22 |
trunk region element | 1.12e-12 | 101 |
thoracic cavity element | 7.06e-12 | 34 |
thoracic cavity | 7.06e-12 | 34 |
thoracic segment organ | 2.05e-11 | 35 |
respiratory tract epithelium | 2.43e-11 | 19 |
lung epithelium | 2.43e-11 | 19 |
respiratory tract | 3.06e-10 | 54 |
respiratory primordium | 3.54e-10 | 38 |
endoderm of foregut | 3.54e-10 | 38 |
respiratory system epithelium | 7.94e-10 | 28 |
tracheobronchial tree | 2.22e-09 | 15 |
lower respiratory tract | 2.22e-09 | 15 |
subdivision of trunk | 3.30e-08 | 112 |
urinary system structure | 5.81e-08 | 47 |
endoderm-derived structure | 6.46e-08 | 160 |
endoderm | 6.46e-08 | 160 |
presumptive endoderm | 6.46e-08 | 160 |
respiratory system | 8.21e-08 | 74 |
renal system | 1.04e-07 | 48 |
thoracic segment of trunk | 2.10e-07 | 52 |
trunk | 4.19e-07 | 199 |
lower respiratory tract epithelium | 5.18e-07 | 3 |
epithelium of bronchus | 5.18e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 9.31e-07 | 5 |