FFCP PHASE1:Hg19::chr19:6530841..6530864,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:6530841..6530864,- to FFCP PHASE1:Hg19::chr19:6530841..6530864,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:6530841..6530864,- | |||
|description=CAGE_peak_at_chr19:6530841..6530864,- | |||
|id=chr19:6530841..6530864,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.73e-13;33!CL:0002057;2.73e-13;33!CL:0000473;1.95e-09;39!CL:0000234;1.95e-09;39!CL:0002620;4.14e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.19e-10,42;CL:0002057,4.19e-10,42;CL:0000473,3.55e-09,48;CL:0000234,3.55e-09,48;CL:0002009,3.84e-09,61;CL:0002194,7.51e-08,59;CL:0000576,7.51e-08,59;CL:0000040,7.51e-08,59;CL:0000559,7.51e-08,59;CL:0000557,8.80e-08,67;CL:0002620,6.88e-07,23 | |||
|ontology_enrichment_development_v019=CL:0002057;1.42e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.72e-10!57;UBERON:0005068!5.72e-10!57;UBERON:0006241!5.72e-10!57;UBERON:0007135!5.72e-10!57;UBERON:0000062!1.25e-09!511;UBERON:0002616!4.06e-09!59;UBERON:0002346!4.96e-08!90;UBERON:0000955!1.44e-07!69;UBERON:0006238!1.44e-07!69;UBERON:0003075!1.72e-07!86;UBERON:0007284!1.72e-07!86;UBERON:0002020!2.59e-07!34;UBERON:0003528!2.59e-07!34;UBERON:0001893!3.75e-07!34;UBERON:0005743!5.43e-07!86;UBERON:0001017!6.80e-07!82;UBERON:0002791!7.16e-07!33;UBERON:0003080!8.79e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.96e-13;20!UBERON:0002619;6.47e-12;22!UBERON:0000956;4.36e-10;25!UBERON:0000203;4.36e-10;25!UBERON:0002791;8.60e-10;32!UBERON:0003528;1.42e-09;34!UBERON:0002020;1.42e-09;34!UBERON:0001893;4.91e-09;34!UBERON:0001869;8.90e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.08e-14,20;UBERON:0002619,4.83e-13,22;UBERON:0003528,2.68e-12,34;UBERON:0002020,2.68e-12,34;UBERON:0001049,4.18e-12,56;UBERON:0005068,4.18e-12,56;UBERON:0006241,4.18e-12,56;UBERON:0007135,4.18e-12,56;UBERON:0002791,8.81e-12,32;UBERON:0000956,4.69e-11,25;UBERON:0000203,4.69e-11,25;UBERON:0001893,8.03e-11,34;UBERON:0000073,8.93e-11,53;UBERON:0002616,8.93e-11,53;UBERON:0001869,2.62e-10,32;UBERON:0002780,3.57e-09,41;UBERON:0001890,3.57e-09,41;UBERON:0003080,3.57e-09,41;UBERON:0006240,3.57e-09,41;UBERON:0000955,1.37e-08,68;UBERON:0006238,1.37e-08,68;UBERON:0002346,2.32e-08,86;UBERON:0003075,3.04e-08,82;UBERON:0007284,3.04e-08,82;UBERON:0001017,1.08e-07,81;UBERON:0001016,6.07e-07,89;UBERON:0003056,9.56e-07,61 | |||
|phase1_expression=0.726713517082227,0.214100523890983,1.12763523276777,1.0007329835313,2.23480547213644,0.872338524100369,0,0,1.04474251279935,0.245733936501509,0,0,0,0.123766352960047,0,0,0.602694528023977,1.46062018077475,0,0.738726348460727,0.408001382488506,0.940364164434263,0,0.136874425072884,0,0.382067028739756,0.246301768349837,0.157421562627358,0,0.767658796194425,0,0.919421224478927,0,0.369754010166788,0,0.284338464974843,0,0,0.200544447470142,0,1.11957737119962,1.29557466407592,0.77272670290256,0.145398238779565,0.377875943688809,0,0.697287110717054,1.6446715520873,2.16794459626573,1.7261543539329,2.56160706529101,1.18241114944293,1.03423704220986,3.22742341791913,0,0.941211697713023,0.272906150057846,0.449446968890169,1.83650335422542,1.92557416245656,1.27867425159808,0.659702600373432,1.19678194572979,0.852449501065388,2.32167390902867,5.10646702222026,2.4912889959823,0.502497330513487,1.5644487552606,1.52032191293582,1.81619850790011,6.2607198117886,2.53169909952708,0.211255286311942,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,1.44575660953827,0,0.144846518960824,1.5905718941022,1.94653948121054,0.378139268656271,0.221729397462564,0.351339142772504,0.916853528483988,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.506522046658319,2.51577443545116,1.43418310374407,1.06400514659507,0,0,0.49333509683432,0.933633106199299,0,0.326923806226917,0.605429710579726,0,0.234321431833797,0,0,0,0.939475989150119,0.647491777472526,0.702254033511242,0.408308342509787,0.368502951935304,0.206651562351531,0,0,1.82032272387605,0,0.673344455816265,0.375355559615893,1.10825646193673,0,0,0.300476117813194,0,4.84352016359927,0.640672166455702,1.27159140695737,3.60109315301283,1.03052529238439,3.34932702059318,0.18611685633159,3.03797398034279,1.16924406193438,5.3011092591264,0.552299391853796,1.2931684545505,3.55009592516614,0.604512589365842,0.169560592310488,0.193260853163297,0,0,0.121973706129595,0,0.116193942869518,0.518305275076852,0.252320850875628,0,0,0,0,0,0,0.709840800239063,0.674338760312407,0.241011029883482,1.43382164552112,0.217879444092406,0.237270619111097,2.29213223872279,1.76599318612811,1.53898862778556,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,0,0.737930631258681,0.343135620597051,0.439001141634502,0,0.100528972411631,0,0,1.03993478527958,0,0.115930404975077,0.117408694235822,0.433099343283221,0,0.190254152234598,0,0,0.492434012174795,0.468008530278475,0.297262324577456,0,0,0.141775097242386,0,0,0,0,0.088048434013226,0.207328115540772,0,0,0.888970520090367,3.05590740446622,1.17217447210047,3.4214489204541,0.822619941626588,1.20137223137567,0.571652865261156,0.672786506072164,0.87192013766656,0.51336800074665,0.258543431515556,7.15312891703765,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0.142977993658148,0,0.823240336780769,0,0,0,1.20575750823834,0,0.099972991182057,1.2162378064119,0.502257091432126,0,1.19812427745791,1.14861935834114,1.42636905040718,0.289562613335158,0.205476322550383,0.716243852959582,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,0,0,0.36807447515742,0,0,0.623912584592421,1.60586089917446,0.946214490203608,0.585707074963566,0,0,1.03473071292505,0,0,0.434418072340414,0.391602314925481,0,0,0,0,0,0,0,0.744323423456331,3.52962538562544,0.280660094433074,0.512556597022804,1.53512174720011,0.965123526861645,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0.368323955743585,0.114814448164607,0.182091168006717,0.131124414959424,0.451199612907412,0.308061348417659,0.784349769176855,0,0.211103257785751,0,0,0,0,0.812839312631559,0,0,0,0,0,0,0,0.984043937099117,0.325378394664303,0.412164046590889,0.640986253728404,1.32015199872941,0,0.650060246036521,0,0.290012154876366,0,0.15350367472613,0.413509717453592,0.107420244868274,0.435050081742686,0.340906509664404,0.267096106940212,0.165284915360978,0,1.40373983744043,0.10115778085555,0,0.94443704049192,0.6970372701606,0.616067160352178,0.532306030317022,0,0.18532421910392,0,0.372158369359667,0.949138274156178,0,0.255897791311334,0,1.27281299170375,0,0.359744915166629,0.54907405947211,0.353437207037059,0.404364963146632,0,0,0.975267478179181,0.487426979262569,0,0,0.282810863907425,0,0,0,0.438450885253763,0.578775534266688,0,0,0.30982349809975,0.281695602532241,0,0.0982490410131212,0,0,0.211107635297664,0.658589785919804,1.13841952129715,0.349934720244983,0.0962221127255121,0,0,0.753150406214233,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,1.92495971052672,0.245040215981032,0.185803175125719,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0.307240764308458,0.671028323677248,0.166849141711909,0.19538809540204,1.39203086947621,0,0,0,0,0.18714054040822,0.586032717087576,0.121360521749513,0.334330152832435,0.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| ||
|short_description=p@chr19:6530841..6530864,- | |||
}} | }} |
Latest revision as of 18:11, 27 July 2015
Short description: | p@chr19:6530841..6530864, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:6530841..6530864, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.19e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.19e-10 | 42 |
defensive cell | 3.55e-09 | 48 |
phagocyte | 3.55e-09 | 48 |
macrophage dendritic cell progenitor | 3.84e-09 | 61 |
monopoietic cell | 7.51e-08 | 59 |
monocyte | 7.51e-08 | 59 |
monoblast | 7.51e-08 | 59 |
promonocyte | 7.51e-08 | 59 |
granulocyte monocyte progenitor cell | 8.80e-08 | 67 |
skin fibroblast | 6.88e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.08e-14 | 20 |
regional part of cerebral cortex | 4.83e-13 | 22 |
brain grey matter | 2.68e-12 | 34 |
gray matter | 2.68e-12 | 34 |
neural tube | 4.18e-12 | 56 |
neural rod | 4.18e-12 | 56 |
future spinal cord | 4.18e-12 | 56 |
neural keel | 4.18e-12 | 56 |
regional part of telencephalon | 8.81e-12 | 32 |
cerebral cortex | 4.69e-11 | 25 |
pallium | 4.69e-11 | 25 |
telencephalon | 8.03e-11 | 34 |
regional part of nervous system | 8.93e-11 | 53 |
regional part of brain | 8.93e-11 | 53 |
cerebral hemisphere | 2.62e-10 | 32 |
regional part of forebrain | 3.57e-09 | 41 |
forebrain | 3.57e-09 | 41 |
anterior neural tube | 3.57e-09 | 41 |
future forebrain | 3.57e-09 | 41 |
brain | 1.37e-08 | 68 |
future brain | 1.37e-08 | 68 |
neurectoderm | 2.32e-08 | 86 |
neural plate | 3.04e-08 | 82 |
presumptive neural plate | 3.04e-08 | 82 |
central nervous system | 1.08e-07 | 81 |
nervous system | 6.07e-07 | 89 |
pre-chordal neural plate | 9.56e-07 | 61 |