FFCP PHASE1:Hg19::chr1:154942415..154942436,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:154942415..154942436,-
|short_description=p@chr1:154942415..154942436,-
|description=CAGE_peak_at_chr1:154942415..154942436,-
|association_with_transcript=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:154942415..154942436,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_at_chr1:154942415..154942436,- | |||
|id=chr1:154942415..154942436,- | |||
|ontology_enrichment_celltype=CL:0000064!2.54e-07!3;CL:0005012!2.54e-07!3;CL:0000067!2.54e-07!3;CL:0002304!2.54e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002262;1.33e-09;2!CL:0002549;1.33e-09;2!CL:1000398;1.33e-09;2!CL:0000064;8.14e-07;3!CL:0000067;8.14e-07;3!CL:0005012;8.14e-07;3!CL:0002304;8.14e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,1.33e-09,2;CL:1000398,1.33e-09,2;CL:0002549,1.57e-09,2;CL:0000064,6.88e-07,3;CL:0000067,6.88e-07,3;CL:0005012,6.88e-07,3;CL:0002304,6.88e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;2.66e-18;1!DOID:4549;2.66e-18;1!DOID:5861;2.66e-18;1!DOID:6496;2.66e-18;1!DOID:4074;1.33e-09;2!DOID:4905;1.33e-09;2!DOID:3498;1.33e-09;2!DOID:0060084;8.14e-07;3!DOID:127;8.14e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.66e-18,1;DOID:4549,2.66e-18,1;DOID:5861,2.66e-18,1;DOID:6496,2.66e-18,1;DOID:4074,1.44e-09,2;DOID:4905,1.44e-09,2;DOID:3498,1.44e-09,2;DOID:0060084,9.64e-07,3;DOID:127,9.64e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000488!5.72e-09!4;UBERON:0001778!2.54e-07!3;UBERON:0001775!2.54e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002426;7.36e-18;1!UBERON:0003831;7.36e-18;1!UBERON:0003898;7.36e-18;1!UBERON:0004830;7.36e-18;1!UBERON:0003830;7.36e-18;1!UBERON:0005175;7.36e-18;1!UBERON:0001774;7.36e-18;1!UBERON:0001103;7.36e-18;1!UBERON:0001281;1.33e-09;2!UBERON:0003497;1.33e-09;2!UBERON:0003909;1.33e-09;2!UBERON:0005090;1.33e-09;2!UBERON:0001630;1.33e-09;2!UBERON:0005629;1.33e-09;2!UBERON:0003835;1.33e-09;2!UBERON:0005358;1.33e-09;2!UBERON:0001886;1.33e-09;2!UBERON:0004086;1.33e-09;2!UBERON:0005282;1.33e-09;2!UBERON:0005281;1.33e-09;2!UBERON:0002418;5.80e-07;3!UBERON:0004755;5.80e-07;3!UBERON:0007625;5.98e-07;11!UBERON:0006876;5.98e-07;11!UBERON:0001778;8.14e-07;3!UBERON:0001280;8.14e-07;3!UBERON:0004647;8.14e-07;3!UBERON:0001775;8.14e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,3.75e-18,1;UBERON:0003831,3.75e-18,1;UBERON:0003898,3.75e-18,1;UBERON:0004830,3.75e-18,1;UBERON:0003830,3.75e-18,1;UBERON:0005175,3.75e-18,1;UBERON:0001774,3.75e-18,1;UBERON:0001103,3.75e-18,1;UBERON:0010084,3.75e-18,1;UBERON:0005090,9.46e-10,2;UBERON:0001630,9.46e-10,2;UBERON:0001281,1.33e-09,2;UBERON:0003497,1.33e-09,2;UBERON:0003909,1.33e-09,2;UBERON:0003835,1.33e-09,2;UBERON:0005629,1.57e-09,2;UBERON:0005358,1.57e-09,2;UBERON:0001886,1.57e-09,2;UBERON:0004086,1.57e-09,2;UBERON:0005282,1.57e-09,2;UBERON:0005281,1.57e-09,2;UBERON:0002418,5.80e-07,3;UBERON:0004755,5.80e-07,3;UBERON:0006876,5.81e-07,11;UBERON:0007625,6.16e-07,11;UBERON:0001778,6.88e-07,3;UBERON:0001775,6.88e-07,3;UBERON:0001280,8.15e-07,3;UBERON:0004647,8.15e-07,3;UBERON:0005171,8.15e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,1.55210578223795,0.966182642624386,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,1.15235184896,0,0,0,0,0,0,0,0.204154171254893,0.368502951935304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504867548488229,0.184099797284599,0.323292113637624,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0,0,0,0,0,1.04337364477569,0,0.721832238805369,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0,0,0.783204629850962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0,0.267096106940212,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0.611030144933625,0,0,0,0.067401132980677,1.60515529459758,0,0,0,1.21390189767046,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.34945333648406,0.51595809741485,0,0,0,0.0969890164884194,13.5031873837995,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0.5085370753095,1.08599920350743,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0.378806010550178,1.50940741051545,0,0,0.302461847526478,0.15543720058278,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0.107410557042488,0.464033759878494,0,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82631744101899,0,0,0.428859265059938,0,0,0,0,0.207216164163037,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0.196308467114945,0,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0.462175628631418,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606351566874658,0,0,0,0,0.665320713092027,0,0,0,0,0,0.244482888365733,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,1.55210578223795,0.966182642624386,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,1.15235184896,0,0,0,0,0,0,0,0.204154171254893,0.368502951935304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504867548488229,0.184099797284599,0.323292113637624,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0,0,0,0,0,1.04337364477569,0,0.721832238805369,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0,0,0.783204629850962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0,0.267096106940212,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0.611030144933625,0,0,0,0.067401132980677,1.60515529459758,0,0,0,1.21390189767046,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.34945333648406,0.51595809741485,0,0,0,0.0969890164884194,13.5031873837995,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0.5085370753095,1.08599920350743,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0.378806010550178,1.50940741051545,0,0,0.302461847526478,0.15543720058278,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0.107410557042488,0.464033759878494,0,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82631744101899,0,0,0.428859265059938,0,0,0,0,0.207216164163037,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0.196308467114945,0,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0.462175628631418,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606351566874658,0,0,0,0,0.665320713092027,0,0,0,0,0,0.244482888365733,0,0,0.402547587182052,0 | ||
|short_description=p@chr1:154942415..154942436,- | |||
}} | }} |
Latest revision as of 22:07, 27 July 2015
Short description: | p@chr1:154942415..154942436, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:154942415..154942436, - |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 1.33e-09 | 2 |
endothelial cell of hepatic sinusoid | 1.33e-09 | 2 |
fibroblast of choroid plexus | 1.57e-09 | 2 |
ciliated cell | 6.88e-07 | 3 |
ciliated epithelial cell | 6.88e-07 | 3 |
multi-ciliated epithelial cell | 6.88e-07 | 3 |
non-pigmented ciliary epithelial cell | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chest muscle | 3.75e-18 | 1 |
respiratory system muscle | 3.75e-18 | 1 |
skeletal muscle of trunk | 3.75e-18 | 1 |
respiratory system skeletal muscle | 3.75e-18 | 1 |
thoracic segment muscle | 3.75e-18 | 1 |
chest organ | 3.75e-18 | 1 |
muscle of trunk | 3.75e-18 | 1 |
diaphragm | 3.75e-18 | 1 |
future diaphragm | 3.75e-18 | 1 |
muscle structure | 9.46e-10 | 2 |
muscle organ | 9.46e-10 | 2 |
hepatic sinusoid | 1.33e-09 | 2 |
abdomen blood vessel | 1.33e-09 | 2 |
sinusoid | 1.33e-09 | 2 |
abdominal segment blood vessel | 1.33e-09 | 2 |
vascular plexus | 1.57e-09 | 2 |
ventricle of nervous system | 1.57e-09 | 2 |
choroid plexus | 1.57e-09 | 2 |
brain ventricle | 1.57e-09 | 2 |
ventricular system of brain | 1.57e-09 | 2 |
ventricular system of central nervous system | 1.57e-09 | 2 |
cartilage tissue | 5.80e-07 | 3 |
skeletal tissue | 5.80e-07 | 3 |
vasculature of organ | 5.81e-07 | 11 |
pigment epithelium of eye | 6.16e-07 | 11 |
ciliary epithelium | 6.88e-07 | 3 |
ciliary body | 6.88e-07 | 3 |
liver parenchyma | 8.15e-07 | 3 |
liver lobule | 8.15e-07 | 3 |
hepatic duct | 8.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.66e-18 | 1 |
extraosseous chondrosarcoma | 2.66e-18 | 1 |
myxoid chondrosarcoma | 2.66e-18 | 1 |
extraskeletal myxoid chondrosarcoma | 2.66e-18 | 1 |
pancreas adenocarcinoma | 1.44e-09 | 2 |
pancreatic carcinoma | 1.44e-09 | 2 |
pancreatic ductal adenocarcinoma | 1.44e-09 | 2 |
cell type benign neoplasm | 9.64e-07 | 3 |
leiomyoma | 9.64e-07 | 3 |