FFCP PHASE1:Hg19::chr1:22203039..22203053,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:22203039..22203053,- | |||
|coexpression_cluster_id=C547 | |||
|description=CAGE_peak_at_chr1:22203039..22203053,- | |||
|id=chr1:22203039..22203053,- | |||
|ontology_enrichment_celltype=CL:0000222!1.50e-14!119;CL:0000115!7.55e-13!35;CL:0002078!3.13e-12!44;CL:0000055!6.51e-12!180;CL:0000213!7.22e-12!57;CL:0000215!7.22e-12!57;CL:0002139!1.20e-11!24;CL:0002321!2.08e-10!248;CL:0000220!3.28e-10!246;CL:0000057!6.76e-10!75;CL:0000071!8.31e-08!18;CL:0002546!8.31e-08!18;CL:1000413!2.69e-07!9;CL:0000144!9.28e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.55e-25;36!CL:0002139;6.26e-23;24!CL:0002078;3.08e-19;45!CL:0000071;2.60e-14;18!CL:1000413;2.32e-11;9!CL:0002138;6.43e-11;6!CL:0000213;2.61e-10;58!CL:0000215;2.61e-10;58!CL:0002188;1.27e-09;5!CL:0002544;7.35e-08;6!CL:0002262;3.05e-07;2!CL:1000398;3.05e-07;2!CL:0000153;3.60e-07;9!CL:0000447;3.60e-07;9!CL:0002545;7.25e-07;2!CL:1000746;7.41e-07;7!CL:1000612;7.41e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,5.04e-30,36;CL:0002078,8.29e-28,45;CL:0002139,3.84e-23,24;CL:0000213,3.92e-20,58;CL:0000215,3.92e-20,58;CL:0000071,2.27e-14,18;CL:0002546,2.27e-14,18;CL:0000222,3.65e-12,121;CL:1000413,2.17e-11,9;CL:0005020,4.15e-11,6;CL:0002138,4.15e-11,6;CL:0005022,4.15e-11,6;CL:0002188,8.10e-10,5;CL:0000057,2.10e-08,76;CL:0002544,6.96e-08,6;CL:0000153,1.85e-07,9;CL:0000447,1.85e-07,9;CL:0002262,2.99e-07,2;CL:1000398,2.99e-07,2;CL:1000746,5.43e-07,7;CL:1000612,5.43e-07,7;CL:0002545,6.05e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002546;2.60e-14;18!CL:0005022;6.43e-11;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.43e-08;3!DOID:127;1.43e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.82e-08,3;DOID:127,1.82e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000055!7.81e-15!69;UBERON:0004872!1.80e-14!84;UBERON:0002049!9.48e-14!79;UBERON:0007798!9.48e-14!79;UBERON:0003914!1.29e-12!118;UBERON:0001981!6.40e-12!60;UBERON:0007500!6.40e-12!60;UBERON:0004537!6.40e-12!60;UBERON:0006965!6.40e-12!60;UBERON:0004535!2.92e-11!110;UBERON:0001009!4.35e-11!113;UBERON:0000947!4.89e-09!21;UBERON:0010191!4.89e-09!21;UBERON:0001637!6.74e-09!42;UBERON:0003509!6.74e-09!42;UBERON:0004572!6.74e-09!42;UBERON:0001986!8.31e-08!18;UBERON:0004638!8.31e-08!18;UBERON:0004852!8.31e-08!18;UBERON:0003915!2.69e-07!9;UBERON:0004700!2.69e-07!9;UBERON:0001917!2.69e-07!9;UBERON:0004573!2.71e-07!33;UBERON:0004571!2.71e-07!33;UBERON:0006914!7.27e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.60e-14;18!UBERON:0001986;2.60e-14;18!UBERON:0004852;2.60e-14;18!UBERON:0006914;6.54e-14;25!UBERON:0000055;2.22e-13;65!UBERON:0001473;1.16e-11;8!UBERON:0004536;1.16e-11;8!UBERON:0006558;1.16e-11;8!UBERON:0003915;2.32e-11;9!UBERON:0004700;2.32e-11;9!UBERON:0001917;2.32e-11;9!UBERON:0000487;2.62e-11;22!UBERON:0000947;2.53e-09;21!UBERON:0010191;2.53e-09;21!UBERON:0002465;3.44e-09;10!UBERON:0002049;7.69e-09;75!UBERON:0007798;7.69e-09;75!UBERON:0004573;2.63e-08;33!UBERON:0004571;2.63e-08;33!UBERON:0001637;3.74e-08;42!UBERON:0003509;3.74e-08;42!UBERON:0004572;3.74e-08;42!UBERON:0007500;8.80e-08;56!UBERON:0001981;8.80e-08;56!UBERON:0004537;8.80e-08;56!UBERON:0001281;3.05e-07;2!UBERON:0003497;3.05e-07;2!UBERON:0003909;3.05e-07;2!UBERON:0003835;3.05e-07;2!UBERON:0003513;3.20e-07;7!UBERON:0005800;7.25e-07;2!UBERON:0001515;7.25e-07;2!UBERON:0000074;7.41e-07;7!UBERON:0001229;7.41e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.08e-19,68;UBERON:0002049,2.68e-16,78;UBERON:0007798,2.68e-16,78;UBERON:0001009,5.87e-16,112;UBERON:0004535,2.18e-15,109;UBERON:0004638,2.27e-14,18;UBERON:0001986,2.27e-14,18;UBERON:0004852,2.27e-14,18;UBERON:0006914,4.38e-14,25;UBERON:0004872,1.74e-13,83;UBERON:0007500,6.58e-13,59;UBERON:0001981,6.58e-13,59;UBERON:0004537,6.58e-13,59;UBERON:0006965,6.58e-13,59;UBERON:0003914,7.14e-13,117;UBERON:0001473,7.17e-12,8;UBERON:0004536,7.17e-12,8;UBERON:0006558,7.17e-12,8;UBERON:0003915,2.17e-11,9;UBERON:0004700,2.17e-11,9;UBERON:0001917,2.17e-11,9;UBERON:0000487,2.35e-11,22;UBERON:0002465,2.36e-09,10;UBERON:0000947,2.83e-09,21;UBERON:0010191,2.83e-09,21;UBERON:0001637,1.11e-08,42;UBERON:0003509,1.11e-08,42;UBERON:0004572,1.11e-08,42;UBERON:0004573,3.58e-08,33;UBERON:0004571,3.58e-08,33;UBERON:0001281,2.99e-07,2;UBERON:0003497,2.99e-07,2;UBERON:0003909,2.99e-07,2;UBERON:0003835,2.99e-07,2;UBERON:0003513,3.08e-07,7;UBERON:0004111,3.62e-07,240;UBERON:0010532,5.43e-07,7;UBERON:0000074,5.43e-07,7;UBERON:0001229,5.43e-07,7;UBERON:0001230,5.43e-07,7;UBERON:0003220,5.43e-07,7;UBERON:0005749,5.43e-07,7;UBERON:0004199,5.43e-07,7;UBERON:0004209,5.43e-07,7;UBERON:0004198,5.43e-07,7;UBERON:0005800,6.05e-07,2;UBERON:0001515,6.05e-07,2 | |||
|phase1_expression=0.726713517082227,5.1384125733836,0.704772020479856,2.00146596706261,0.893922188854576,0.872338524100369,2.53299878168311,0,0.783556884599516,0.491467873003018,1.39560233594486,0.655324116390517,0.791300934685361,0.123766352960047,0,1.34465029290355,0.602694528023977,0.730310090387373,0.487932798790507,0.492484232307152,0.612002073732759,0.313454721478088,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,1.80719576192283,0.50133791063589,1.44846518960824,0,1.45990461090791,0,0.221729397462564,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,1.38856200643038,2.26123176769604,5.45349267072878,9.35401342596229,0.626984899610432,0.775250277507987,1.06729878806013,1.67360306382335,4.83395180530976,0,7.80998584154142,1.47065232138347,25.1144003843345,1.42879565254528,0.673588117878509,0.112611480483322,0,0,1.46561395144326,0,0,0,0.993943903390637,0.633152558322899,0.264818361626438,6.02356903572509,1.06400514659507,0,2.1349799145941,0.98667019366864,0,1.34710672069688,1.47115712802113,0,0.576175924479999,0.234321431833797,0,0,0.448346041655403,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0,0,1.23633464639278,0,2.87447256726495,0,0,0,0,0.919463387397059,0,0.113432183160021,3.22901344239952,0.640672166455702,0.635795703478686,3.30100205692843,0.412210116953756,0.515281080091258,0,0.337552664482532,0.584622030967192,1.51460264546469,0.368199594569197,0.484938170456436,2.4850671476163,0.403008392910561,1.01736355386293,0,0.545492241181669,0.286804595389004,0.121973706129595,0.132529768321485,0.232387885739037,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0,0,0,5.16708818237254,5.60967095213783,0.8231480226628,1.47008711385542,0,0,0.590789906681404,0,0.491953754172454,0,0.548751427043128,0,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0,1.15493158208859,1.85194205030644,1.71228737011138,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0,0,0.112131084345361,0.43596006883328,0,0.129271715757778,7.15312891703765,0,0.531876233169741,0,0,0,0,0.285955987316295,0.542621605391443,0.823240336780769,0,0,0.791951872933429,0,0,0.299918973546171,0,0,0,0.239624855491583,2.29723871668228,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00034104211935,0,1.45579603071565,1.78428988797162,1.10391690523754,0.702848489956279,0,0,2.0694614258501,0,0.184369168541703,0.347534457872331,0,0.343143423810856,0,0,0,0.303127571446259,0,0.30239029332968,0.992431231275107,0.767309866440312,4.77122160536225,0.896974044789907,0.511707249066704,1.60853921143608,1.48418066444991,0.616838775210622,0.177561725313127,0,1.03850885836724,0.697262270759755,0.241718899183244,1.00253235151642,0.184161977871793,0.229628896329213,0.182091168006717,0.524497659837696,0,0.308061348417659,0,0,0.105551628892876,9.09867072567173,1.87103075804167,0.215915916102139,20.0495428497376,0.812839312631559,0.501689773854853,0,0,0.223874754722178,0,0,0,0.984043937099117,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0.650060246036521,0,0.386682873168488,0,0,0,0.214840489736547,0.580066775656914,0,0.534192213880424,0.330569830721956,0.192190067365106,0,0,0,4.40737285562896,0.6970372701606,1.54016790088044,0,0,0.37064843820784,0,0,0,0.190630193923825,0.255897791311334,0,0,0,0.359744915166629,0.274537029736055,0,0.404364963146632,0,0,0.48763373908959,2.43713489631284,0,0.136499911407986,0.424216295861138,0,0,6.6343897524122,0.876901770507525,0.578775534266688,0.655894752046633,0.202910376962704,0.30982349809975,0.845086807596724,0.143411352204052,0.392996164052485,0,0.354761064070598,1.47775344708365,1.64647446479951,0,0.699869440489966,0,1.34060455107157,0,0.282431402330337,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0.296964680832639,0.307160702099232,0,0,0,0,0,0.996239941255349,0,0,0,0,0.933118762985422,0.179736702294654,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0.166211681900156,0,0.19606253431774,0.167821586975843,0,0.158936578980379,0.843992258112108,0.652931232636591,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0.330991955875499,0,0,0,0,0.347119476670262,0,0,0.17472666824203,0.51595809741485,0.290268993867255,0,0,0.290967049465258,0,1.35588444468319,0,0,0,0.195551382734803,0.0801588202515337,0,0.19980960958213,0.144090417154106,0,0.171594997861965,0,0,0,0,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0,1.28767814440971,0,0.201550417460179,0.360299883542404,0,0.0787831823072236,0,0,0,0,0,0.136203406111576,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0.35857467866569,0,1.42939065274673,0,0,1.08599920350743,1.72844298240254,1.30634944043764,0,0.164185041498678,0.170388021785422,0,0,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0.138348634936231,0,0,0.570930667089935,0.941063278792687,0,0.144921028610825,0.447764408660622,0.467426619694449,0.554805861502613,0.189403005275089,0.251567901752575,0,0.457680136793847,0.453692771289717,0.310874401165561,0.443565449968902,0.318593534327405,0.449803112163605,0.155262956876259,0,0.53168342911599,0,0.751288044986092,1.52322084867518,0,0.181848659202559,0.107410557042488,0.928067519756987,1.19428766609585,1.20008329398946,0.686791410365586,0,0,0,0.214441591374926,0,0.680117776536817,0.231522474323834,0.489473409012935,0.179088841081487,0.308801447160972,0,0.176689145945881,0.38582807654183,0.844712203265363,0,0,0.303859956177382,0,0,0,0,0.327609848846413,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.366857197043358,0,0.381382095467167,0,0,0.150420656698515,0.20170506870352,0,0.261906694481422,0,0,0,0,0,0,0,0,0.992422356778588,0,0.383287282918786,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0.156986185701028,0,0,0,0.215927591218621,0.47775168788705,0.142953088353313,0,0,0.173858272302579,0,0.207216164163037,0.51215543128185,0,0,0,0,0.423387050190929,0.68732060563215,0.31020638566432,0,0.559277158988962,0,0.121917924982269,0,0.205325613712494,0,0,0,0.198950775161368,0,0,0,0.150962843566674,0.154348316215889,0.437119121007915,0,0.980593287015622,0,0,0,0,0.679708458751268,0.0939839179798536,0.322289439867886,0,0,0,0.0802413666891683,0,0.917458566809082,0,0,0.0679914901909147,0,0.5290268405154,1.85997509083376,0,2.16313281061895,0,0,0,0.203977659483963,0,0,0,0,0.267964130156178,0,0,0,0,0,0.0620747142958579,0,0,0.404234377916439,0,0,0,0.0717222053926763,0.332660356546013,0.0814032686109745,0.213454691755431,0,0.0898252021065869,7.03922827210363,0.488965776731466,0,1.33151354837103,0.805095174364105,0 | |||
|short_description=p@chr1:22203039..22203053,- | |||
}} |
Latest revision as of 04:11, 28 July 2015
Short description: | p@chr1:22203039..22203053, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:22203039..22203053, - |
Coexpression cluster: | C547_Renal_Endothelial_Mesenchymal_Hepatic_Smooth_Fibroblast_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 5.04e-30 | 36 |
meso-epithelial cell | 8.29e-28 | 45 |
endothelial cell of vascular tree | 3.84e-23 | 24 |
lining cell | 3.92e-20 | 58 |
barrier cell | 3.92e-20 | 58 |
blood vessel endothelial cell | 2.27e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.27e-14 | 18 |
mesodermal cell | 3.65e-12 | 121 |
endothelial cell of artery | 2.17e-11 | 9 |
lymphangioblast | 4.15e-11 | 6 |
endothelial cell of lymphatic vessel | 4.15e-11 | 6 |
vascular lymphangioblast | 4.15e-11 | 6 |
glomerular endothelial cell | 8.10e-10 | 5 |
fibroblast | 2.10e-08 | 76 |
aortic endothelial cell | 6.96e-08 | 6 |
GAG secreting cell | 1.85e-07 | 9 |
carbohydrate secreting cell | 1.85e-07 | 9 |
endothelial cell of sinusoid | 2.99e-07 | 2 |
endothelial cell of hepatic sinusoid | 2.99e-07 | 2 |
glomerular cell | 5.43e-07 | 7 |
kidney corpuscule cell | 5.43e-07 | 7 |
thoracic aorta endothelial cell | 6.05e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.82e-08 | 3 |
leiomyoma | 1.82e-08 | 3 |