FFCP PHASE1:Hg19::chr1:52940651..52940672,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:52940651..52940672,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_at_chr1:52940651..52940672,- | |description=CAGE_peak_at_chr1:52940651..52940672,- | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000946;2.97e-19;1!CL:0000786;2.97e-19;1 | |ontology_enrichment_celltype_v019=CL:0000946;2.97e-19;1!CL:0000786;2.97e-19;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000946,5.62e-19,1;CL:0000786,5.62e-19,1;CL:0000980,5.62e-19,1;CL:0000785,3.58e-10,2;CL:0000955,3.58e-10,2;CL:0000818,3.58e-10,2;CL:0000954,3.58e-10,2;CL:0000816,3.58e-10,2;CL:0000817,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.58e-25;3!CL:0000954;2.60e-10;2!UBERON:0004161;1.78e-07;11 | |ontology_enrichment_development_v019=UBERON:0003056;4.58e-25;3!CL:0000954;2.60e-10;2!UBERON:0004161;1.78e-07;11 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.07e-12!57;UBERON:0005068!1.07e-12!57;UBERON:0006241!1.07e-12!57;UBERON:0007135!1.07e-12!57;UBERON:0002346!1.45e-12!90;UBERON:0002780!4.70e-12!41;UBERON:0001890!4.70e-12!41;UBERON:0006240!4.70e-12!41;UBERON:0002616!4.82e-12!59;UBERON:0003056!1.03e-11!61;UBERON:0003080!1.21e-11!42;UBERON:0000955!3.85e-11!69;UBERON:0006238!3.85e-11!69;UBERON:0002791!5.38e-11!33;UBERON:0003075!1.29e-10!86;UBERON:0007284!1.29e-10!86;UBERON:0001893!1.49e-10!34;UBERON:0002619!1.52e-10!22;UBERON:0002020!1.53e-10!34;UBERON:0003528!1.53e-10!34;UBERON:0005743!2.57e-10!86;UBERON:0000073!3.41e-10!94;UBERON:0001016!3.41e-10!94;UBERON:0001017!4.02e-10!82;UBERON:0001950!4.40e-10!20;UBERON:0001869!4.74e-10!32;UBERON:0000924!5.50e-09!173;UBERON:0006601!5.50e-09!173;UBERON:0000956!6.00e-09!25;UBERON:0000203!6.00e-09!25;UBERON:0004121!1.22e-07!169;UBERON:0000033!2.47e-07!123;UBERON:0007023!2.61e-07!115;UBERON:0000153!3.40e-07!129;UBERON:0007811!3.40e-07!129 | |ontology_enrichment_uberon=UBERON:0001049!1.07e-12!57;UBERON:0005068!1.07e-12!57;UBERON:0006241!1.07e-12!57;UBERON:0007135!1.07e-12!57;UBERON:0002346!1.45e-12!90;UBERON:0002780!4.70e-12!41;UBERON:0001890!4.70e-12!41;UBERON:0006240!4.70e-12!41;UBERON:0002616!4.82e-12!59;UBERON:0003056!1.03e-11!61;UBERON:0003080!1.21e-11!42;UBERON:0000955!3.85e-11!69;UBERON:0006238!3.85e-11!69;UBERON:0002791!5.38e-11!33;UBERON:0003075!1.29e-10!86;UBERON:0007284!1.29e-10!86;UBERON:0001893!1.49e-10!34;UBERON:0002619!1.52e-10!22;UBERON:0002020!1.53e-10!34;UBERON:0003528!1.53e-10!34;UBERON:0005743!2.57e-10!86;UBERON:0000073!3.41e-10!94;UBERON:0001016!3.41e-10!94;UBERON:0001017!4.02e-10!82;UBERON:0001950!4.40e-10!20;UBERON:0001869!4.74e-10!32;UBERON:0000924!5.50e-09!173;UBERON:0006601!5.50e-09!173;UBERON:0000956!6.00e-09!25;UBERON:0000203!6.00e-09!25;UBERON:0004121!1.22e-07!169;UBERON:0000033!2.47e-07!123;UBERON:0007023!2.61e-07!115;UBERON:0000153!3.40e-07!129;UBERON:0007811!3.40e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.30e-37;2!UBERON:0002757;1.30e-37;2!UBERON:0010134;1.30e-37;2!UBERON:0005408;1.30e-37;2!UBERON:0001899;1.30e-37;2!UBERON:0003296;2.26e-19;4!UBERON:0010133;2.26e-19;4!UBERON:0002784;2.26e-19;4!UBERON:0000966;1.81e-15;5!UBERON:0005388;1.81e-15;5!UBERON:0001802;1.81e-15;5!UBERON:0000970;9.04e-15;20!UBERON:0002104;4.37e-14;21!UBERON:0000020;6.81e-13;23!UBERON:0001032;2.27e-12;24!UBERON:0004456;2.27e-12;24!UBERON:0001894;1.68e-11;7!UBERON:0000019;3.42e-09;19!UBERON:0000047;3.42e-09;19!UBERON:0004088;3.42e-09;19!UBERON:0010230;3.42e-09;19!UBERON:0002368;1.93e-08;33!UBERON:0001456;2.27e-08;21 | |ontology_enrichment_uberon_v019=UBERON:0001905;1.30e-37;2!UBERON:0002757;1.30e-37;2!UBERON:0010134;1.30e-37;2!UBERON:0005408;1.30e-37;2!UBERON:0001899;1.30e-37;2!UBERON:0003296;2.26e-19;4!UBERON:0010133;2.26e-19;4!UBERON:0002784;2.26e-19;4!UBERON:0000966;1.81e-15;5!UBERON:0005388;1.81e-15;5!UBERON:0001802;1.81e-15;5!UBERON:0000970;9.04e-15;20!UBERON:0002104;4.37e-14;21!UBERON:0000020;6.81e-13;23!UBERON:0001032;2.27e-12;24!UBERON:0004456;2.27e-12;24!UBERON:0001894;1.68e-11;7!UBERON:0000019;3.42e-09;19!UBERON:0000047;3.42e-09;19!UBERON:0004088;3.42e-09;19!UBERON:0010230;3.42e-09;19!UBERON:0002368;1.93e-08;33!UBERON:0001456;2.27e-08;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.30e-37,2;UBERON:0002757,1.30e-37,2;UBERON:0010134,1.30e-37,2;UBERON:0005408,1.30e-37,2;UBERON:0001899,1.30e-37,2;UBERON:0003296,2.26e-19,4;UBERON:0010133,2.26e-19,4;UBERON:0002784,2.26e-19,4;UBERON:0000970,3.39e-14,21;UBERON:0002104,3.39e-14,21;UBERON:0000966,4.26e-13,6;UBERON:0005388,4.26e-13,6;UBERON:0001802,4.26e-13,6;UBERON:0000020,1.81e-12,24;UBERON:0001032,1.81e-12,24;UBERON:0004456,1.81e-12,24;UBERON:0001894,1.68e-11,7;UBERON:0006222,1.68e-11,7;UBERON:0003056,1.92e-10,61;UBERON:0000019,8.30e-09,20;UBERON:0000047,8.30e-09,20;UBERON:0010312,8.30e-09,20;UBERON:0004088,8.30e-09,20;UBERON:0010230,8.30e-09,20;UBERON:0003072,8.30e-09,20;UBERON:0004128,8.30e-09,20;UBERON:0003071,8.30e-09,20;UBERON:0002368,1.27e-08,35;UBERON:0001456,4.66e-08,22;UBERON:0003075,9.45e-08,82;UBERON:0007284,9.45e-08,82;UBERON:0002346,2.20e-07,86;UBERON:0000949,9.20e-07,45 | |||
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| ||
|short_description=p@chr1:52940651..52940672,- | |short_description=p@chr1:52940651..52940672,- | ||
}} | }} |
Latest revision as of 09:05, 28 July 2015
Short description: | p@chr1:52940651..52940672, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:52940651..52940672, - |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 5.62e-19 | 1 |
plasma cell | 5.62e-19 | 1 |
plasmablast | 5.62e-19 | 1 |
mature B cell | 3.58e-10 | 2 |
pre-B-II cell | 3.58e-10 | 2 |
transitional stage B cell | 3.58e-10 | 2 |
small pre-B-II cell | 3.58e-10 | 2 |
immature B cell | 3.58e-10 | 2 |
precursor B cell | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.30e-37 | 2 |
regional part of epithalamus | 1.30e-37 | 2 |
secretory circumventricular organ | 1.30e-37 | 2 |
circumventricular organ | 1.30e-37 | 2 |
epithalamus | 1.30e-37 | 2 |
gland of diencephalon | 2.26e-19 | 4 |
neuroendocrine gland | 2.26e-19 | 4 |
regional part of diencephalon | 2.26e-19 | 4 |
eye | 3.39e-14 | 21 |
visual system | 3.39e-14 | 21 |
retina | 4.26e-13 | 6 |
photoreceptor array | 4.26e-13 | 6 |
posterior segment of eyeball | 4.26e-13 | 6 |
sense organ | 1.81e-12 | 24 |
sensory system | 1.81e-12 | 24 |
entire sense organ system | 1.81e-12 | 24 |
diencephalon | 1.68e-11 | 7 |
future diencephalon | 1.68e-11 | 7 |
pre-chordal neural plate | 1.92e-10 | 61 |
camera-type eye | 8.30e-09 | 20 |
simple eye | 8.30e-09 | 20 |
immature eye | 8.30e-09 | 20 |
ocular region | 8.30e-09 | 20 |
eyeball of camera-type eye | 8.30e-09 | 20 |
optic cup | 8.30e-09 | 20 |
optic vesicle | 8.30e-09 | 20 |
eye primordium | 8.30e-09 | 20 |
endocrine gland | 1.27e-08 | 35 |
face | 4.66e-08 | 22 |
neural plate | 9.45e-08 | 82 |
presumptive neural plate | 9.45e-08 | 82 |
neurectoderm | 2.20e-07 | 86 |
endocrine system | 9.20e-07 | 45 |