FFCP PHASE1:Hg19::chr2:238289803..238289845,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:238289803..238289845,- | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_at_chr2:238289803..238289845,- | |description=CAGE_peak_at_chr2:238289803..238289845,- | ||
|id=chr2:238289803..238289845,- | |id=chr2:238289803..238289845,- | ||
|ontology_enrichment_celltype=CL:0000055!1.92e-48!180;CL:0000057!2.16e-36!75;CL:0000048!4.40e-17!430;CL:0000183!6.07e-17!59;CL:0000680!7.77e-17!57;CL:0000056!7.77e-17!57;CL:0000355!7.77e-17!57;CL:0000187!1.64e-16!54;CL:0000723!4.45e-16!436;CL:0002620!5.73e-15!23;CL:0000034!8.47e-15!444;CL:0000393!2.57e-13!60;CL:0000211!2.57e-13!60;CL:0000192!7.01e-11!42;CL:0000514!7.01e-11!42;CL:0002371!1.54e-09!591;CL:0002320!6.96e-09!365;CL:0000134!3.72e-07!358;CL:0002334!4.11e-07!12;CL:0002494!6.12e-07!16;CL:0000144!8.05e-07!625 | |ontology_enrichment_celltype=CL:0000055!1.92e-48!180;CL:0000057!2.16e-36!75;CL:0000048!4.40e-17!430;CL:0000183!6.07e-17!59;CL:0000680!7.77e-17!57;CL:0000056!7.77e-17!57;CL:0000355!7.77e-17!57;CL:0000187!1.64e-16!54;CL:0000723!4.45e-16!436;CL:0002620!5.73e-15!23;CL:0000034!8.47e-15!444;CL:0000393!2.57e-13!60;CL:0000211!2.57e-13!60;CL:0000192!7.01e-11!42;CL:0000514!7.01e-11!42;CL:0002371!1.54e-09!591;CL:0002320!6.96e-09!365;CL:0000134!3.72e-07!358;CL:0002334!4.11e-07!12;CL:0002494!6.12e-07!16;CL:0000144!8.05e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0002620;7.08e-18;23!CL:0000057;2.51e-14;73!CL:0002320;1.65e-09;188!CL:0000188;1.28e-08;9!CL:0002570;1.63e-08;8!CL:0000723;2.77e-08;61!CL:0000134;1.06e-07;55!CL:0002552;1.60e-07;5!CL:0000048;3.64e-07;58!CL:0000187;7.98e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.37e-35,76;CL:0000048,4.57e-20,427;CL:0000723,2.79e-19,433;CL:0000034,2.86e-18,441;CL:0002620,2.98e-18,23;CL:0002320,1.47e-13,361;CL:0000134,3.16e-11,354;CL:0000187,6.14e-11,55;CL:0000680,6.25e-11,58;CL:0000056,6.25e-11,58;CL:0000355,6.25e-11,58;CL:0000219,2.55e-09,386;CL:0000393,4.52e-09,61;CL:0000211,4.52e-09,61;CL:0000188,1.23e-08,9;CL:0002570,1.61e-08,8;CL:0002552,1.30e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000355;8.59e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!8.37e-07!14 | |ontology_enrichment_disease=DOID:2394!8.37e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:17;1.50e-07;5!DOID:450;1.50e-07;5!DOID:66;1.50e-07;5!DOID:423;1.50e-07;5!DOID:0080000;1.50e-07;5!DOID:11722;1.50e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.32e-07,5;DOID:450,1.32e-07,5;DOID:66,1.32e-07,5;DOID:423,1.32e-07,5;DOID:0080000,1.32e-07,5;DOID:11722,1.32e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.41e-21!83;UBERON:0002329!1.41e-21!83;UBERON:0003077!1.41e-21!83;UBERON:0003059!1.41e-21!83;UBERON:0007282!1.41e-21!83;UBERON:0009618!1.41e-21!83;UBERON:0007285!1.41e-21!83;UBERON:0004290!3.95e-19!70;UBERON:0001134!9.67e-16!61;UBERON:0002036!9.67e-16!61;UBERON:0003082!9.67e-16!61;UBERON:0002385!2.28e-15!63;UBERON:0001015!2.28e-15!63;UBERON:0000383!2.28e-15!63;UBERON:0000486!6.92e-15!82;UBERON:0003102!2.53e-13!95;UBERON:0005256!3.61e-12!143;UBERON:0002199!1.00e-10!45;UBERON:0002416!1.00e-10!45;UBERON:0002097!1.49e-09!40;UBERON:0002384!3.03e-09!375;UBERON:0000475!2.20e-08!365;UBERON:0002100!1.34e-07!216 | |ontology_enrichment_uberon=UBERON:0000914!1.41e-21!83;UBERON:0002329!1.41e-21!83;UBERON:0003077!1.41e-21!83;UBERON:0003059!1.41e-21!83;UBERON:0007282!1.41e-21!83;UBERON:0009618!1.41e-21!83;UBERON:0007285!1.41e-21!83;UBERON:0004290!3.95e-19!70;UBERON:0001134!9.67e-16!61;UBERON:0002036!9.67e-16!61;UBERON:0003082!9.67e-16!61;UBERON:0002385!2.28e-15!63;UBERON:0001015!2.28e-15!63;UBERON:0000383!2.28e-15!63;UBERON:0000486!6.92e-15!82;UBERON:0003102!2.53e-13!95;UBERON:0005256!3.61e-12!143;UBERON:0002199!1.00e-10!45;UBERON:0002416!1.00e-10!45;UBERON:0002097!1.49e-09!40;UBERON:0002384!3.03e-09!375;UBERON:0000475!2.20e-08!365;UBERON:0002100!1.34e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0002199;6.73e-10;46!UBERON:0002416;6.73e-10;46!UBERON:0002384;7.11e-10;198!UBERON:0002097;7.77e-10;41!UBERON:0003102;5.70e-09;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.58e-14,99;UBERON:0002199,4.50e-14,46;UBERON:0002416,4.50e-14,46;UBERON:0002329,5.59e-14,71;UBERON:0003059,5.59e-14,71;UBERON:0007282,5.59e-14,71;UBERON:0004290,5.59e-14,71;UBERON:0009618,5.59e-14,71;UBERON:0003077,1.24e-13,72;UBERON:0007285,1.24e-13,72;UBERON:0007524,2.71e-13,73;UBERON:0002097,4.24e-13,41;UBERON:0002384,5.65e-13,371;UBERON:0007503,1.76e-12,78;UBERON:0001134,1.36e-10,62;UBERON:0002036,1.36e-10,62;UBERON:0003082,1.36e-10,62;UBERON:0000486,2.06e-10,83;UBERON:0002385,5.41e-10,64;UBERON:0001015,5.41e-10,64;UBERON:0000383,5.41e-10,64;UBERON:0005256,2.00e-08,122 | |||
|phase1_expression=1.81678379270557,4.71021152560163,0.140954404095971,2.00146596706261,0,0,0,0.631719873426831,1.04474251279935,0.491467873003018,0,0,0.263766978228454,1.73272894144065,1.98838425436749,4.03395087871065,2.41077811209591,0.730310090387373,0.487932798790507,0.123121058076788,0.612002073732759,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.639312809217652,0.361439152384566,2.00535164254356,1.44846518960824,2.3858578411533,2.43317435151318,0,0.221729397462564,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,2.91250176828533,1.32409180813219,15.7760141411848,3.19201543978521,0.560677600142307,0,0.98667019366864,1.55605517699883,1.21239604862719,2.61539044981534,2.27036141467397,3.45705554687999,1.40592859100278,0.936480230490962,1.1409436430889,1.64393548606981,1.87895197830024,1.94247533241758,1.82586048712923,3.26646674007829,2.45668634623536,4.95963749643674,5.94001428641027,4.45080472701402,0.910161361938026,0.718618141816238,1.0100166837244,2.62748891731125,0.831192346452549,2.19488810440419,4.90380473278431,2.25357088359895,0.453728732640084,6.99619579186562,3.63047560991565,2.33125091275518,7.50227740211006,3.40073346486848,4.3798891807757,1.48893485065272,4.55696097051419,6.8205903612839,6.31084435610286,2.66944706062668,1.45481451136931,7.81021103536552,2.61955455391865,2.37384829234683,0,0,0,0,0,0,0,0,0,1.56449532329816,3.85944562915731,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0,0.171567810298526,0,0,0,0,1.62904152655162,4.15973914111831,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4214489204541,0.102827492703324,0,0,0.448524337381443,3.05172048183296,0.4400297149257,0.646358578788889,0,4.22651376278,1.59562869950922,1.04007436911366,0.771622122786426,0,2.1313774321288,1.42977993658148,2.17048642156577,0.823240336780769,2.60588947434988,0,0.791951872933429,0,0,0,0,0,0,1.91699884393266,0,0,2.60606352001643,0.61642896765115,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.71768088406796,0.500170521059677,3.25518028439683,1.24782516918484,2.49800584316026,0.946214490203608,1.52283839490527,1.80567659836631,2.27407504055985,3.10419213877515,0.664225598535437,1.65932251687533,1.39013783148933,1.56640925970192,5.49029478097369,0,0,0,0,1.66435439510497,0.30239029332968,0.744323423456331,1.99500565274481,6.17452207752762,0.256278298511402,0.511707249066704,1.44768529029247,1.48418066444991,3.39261326365842,1.42049380250502,0.98552587216571,1.55776328755086,1.97557643381931,0,0,0,3.21480454860899,4.18809686415449,2.22911505431021,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0,0,0,0,0,1.54673149267395,4.77550713055398,4.29810289233163,2.06754858726796,4.61907052933577,7.83090147136834,1.96021243057032,2.1367688555217,0,0,0.127612712494584,0,0,8.18512101759664,0,0.924100740528266,0.532306030317022,0,0.18532421910392,0.429374660225974,1.116475108079,0,0.190630193923825,0.767693373934002,3.42351190427136,1.59101623962968,0.78494864019923,0.359744915166629,1.64722217841633,1.17812402345686,0,1.58510321173008,1.26377536871694,1.95053495635836,0.731140468893853,4.22600587027022,2.18399858252777,5.37340641424108,4.52032466480971,1.10273068709225,0,0,2.31510213706675,2.62357900818653,0.405820753925408,0.92947049429925,2.25356482025793,0.430234056612155,0.589494246078727,0,0.354761064070598,0.211107635297664,0.987884678879706,2.27683904259429,1.74967360122491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0,3.42143546427988,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,1.83195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0.687944129886466,0,0,0,0.193978032976839,0,0.225980740780532,1.09633539717401,0,0,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0,0,0,1.83596791745379,0.577901179803038,0,0,0,0,0,0.279282401272254,0,0,0,1.28767814440971,0.223171457441873,0.201550417460179,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,3.25799761052228,4.32110745600634,5.87857248196936,0,0,0.511164065356265,0,0,0,0,0,0,0,0.106787412567695,0.471612915298998,1.65695622138878,0.496166021811951,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,4.70531639396343,0,0,3.28360566351123,8.64739246434731,3.88364103051829,2.46223906857616,8.30174075783498,8.89811221596536,2.05956061557231,4.83938956042365,2.64243240990727,1.77426179987561,0.796483835818512,1.79921244865442,1.552629568762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| ||
|short_description=p@chr2:238289803..238289845,- | |short_description=p@chr2:238289803..238289845,- | ||
}} | }} |
Latest revision as of 08:11, 29 July 2015
Short description: | p@chr2:238289803..238289845, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:238289803..238289845, - |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.37e-35 | 76 |
multi fate stem cell | 4.57e-20 | 427 |
somatic stem cell | 2.79e-19 | 433 |
stem cell | 2.86e-18 | 441 |
skin fibroblast | 2.98e-18 | 23 |
connective tissue cell | 1.47e-13 | 361 |
mesenchymal cell | 3.16e-11 | 354 |
muscle cell | 6.14e-11 | 55 |
muscle precursor cell | 6.25e-11 | 58 |
myoblast | 6.25e-11 | 58 |
multi-potent skeletal muscle stem cell | 6.25e-11 | 58 |
motile cell | 2.55e-09 | 386 |
electrically responsive cell | 4.52e-09 | 61 |
electrically active cell | 4.52e-09 | 61 |
cell of skeletal muscle | 1.23e-08 | 9 |
mesenchymal stem cell of adipose | 1.61e-08 | 8 |
fibroblast of gingiva | 1.30e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.58e-14 | 99 |
integument | 4.50e-14 | 46 |
integumental system | 4.50e-14 | 46 |
somite | 5.59e-14 | 71 |
presomitic mesoderm | 5.59e-14 | 71 |
presumptive segmental plate | 5.59e-14 | 71 |
dermomyotome | 5.59e-14 | 71 |
trunk paraxial mesoderm | 5.59e-14 | 71 |
paraxial mesoderm | 1.24e-13 | 72 |
presumptive paraxial mesoderm | 1.24e-13 | 72 |
dense mesenchyme tissue | 2.71e-13 | 73 |
skin of body | 4.24e-13 | 41 |
connective tissue | 5.65e-13 | 371 |
epithelial vesicle | 1.76e-12 | 78 |
skeletal muscle tissue | 1.36e-10 | 62 |
striated muscle tissue | 1.36e-10 | 62 |
myotome | 1.36e-10 | 62 |
multilaminar epithelium | 2.06e-10 | 83 |
muscle tissue | 5.41e-10 | 64 |
musculature | 5.41e-10 | 64 |
musculature of body | 5.41e-10 | 64 |
trunk mesenchyme | 2.00e-08 | 122 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.32e-07 | 5 |
myotonic disease | 1.32e-07 | 5 |
muscle tissue disease | 1.32e-07 | 5 |
myopathy | 1.32e-07 | 5 |
muscular disease | 1.32e-07 | 5 |
myotonic dystrophy | 1.32e-07 | 5 |