FFCP PHASE1:Hg19::chr3:86992689..86992700,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:86992689..86992700,- | |||
|description=CAGE_peak_at_chr3:86992689..86992700,- | |description=CAGE_peak_at_chr3:86992689..86992700,- | ||
|id=chr3:86992689..86992700,- | |id=chr3:86992689..86992700,- | ||
|ontology_enrichment_celltype=CL:0000057!6.42e-13!75;CL:0002334!3.28e-08!12;CL:0000055!7.39e-08!180 | |ontology_enrichment_celltype=CL:0000057!6.42e-13!75;CL:0002334!3.28e-08!12;CL:0000055!7.39e-08!180 | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.42e-27;3!CL:0000388;1.42e-27;3!CL:0002541;1.37e-13;3!CL:0002591;2.28e-10;1!CL:0002559;1.82e-08;5!CL:0002537;3.78e-08;5!CL:0000349;5.60e-08;19!CL:0000197;6.28e-07;6!CL:0000098;6.28e-07;6!CL:0002167;6.28e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,1.19e-27,3;CL:0000388,1.19e-27,3;CL:0002541,1.33e-13,3;CL:0002591,3.01e-10,1;CL:0002559,1.89e-08,5;CL:0002537,3.16e-08,5;CL:0000349,5.06e-08,19;CL:0000197,4.66e-07,6;CL:0000098,4.66e-07,6;CL:0002167,4.66e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0003099;2.28e-10;1!UBERON:0003852;2.28e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;2.28e-10;1!DOID:4235;2.28e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,2.28e-10,1;DOID:4235,4.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0004923!1.72e-11!57;UBERON:0005631!6.93e-08!14;UBERON:0000158!6.93e-08!14;UBERON:0003688!2.63e-07!6;UBERON:0002358!2.63e-07!6;UBERON:0003684!2.63e-07!6;UBERON:0001178!2.63e-07!6 | |ontology_enrichment_uberon=UBERON:0004923!1.72e-11!57;UBERON:0005631!6.93e-08!14;UBERON:0000158!6.93e-08!14;UBERON:0003688!2.63e-07!6;UBERON:0002358!2.63e-07!6;UBERON:0003684!2.63e-07!6;UBERON:0001178!2.63e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.42e-27;3!UBERON:0000043;1.42e-27;3!UBERON:0007845;1.42e-27;3!UBERON:0005631;5.28e-15;10!UBERON:0000158;5.28e-15;10!UBERON:0003124;1.37e-13;3!UBERON:0000920;1.37e-13;3!UBERON:0005705;2.28e-10;1!UBERON:0008193;2.28e-10;1!UBERON:0010912;2.28e-10;1!UBERON:0002514;2.28e-10;1!UBERON:0003457;2.28e-10;1!UBERON:0008907;2.28e-10;1!UBERON:0008001;2.28e-10;1!UBERON:0007213;2.28e-10;1!UBERON:0009891;2.28e-10;1!UBERON:0007914;2.28e-10;1!UBERON:0007375;2.28e-10;1!UBERON:0003323;2.28e-10;1!UBERON:0010258;2.28e-10;1!UBERON:0005253;2.28e-10;1!UBERON:0007842;2.28e-10;1!UBERON:0002397;2.28e-10;1!UBERON:0003113;2.28e-10;1!UBERON:0003277;2.28e-10;1!UBERON:0001709;2.28e-10;1!UBERON:0002244;2.28e-10;1!UBERON:0005620;2.28e-10;1!UBERON:0010364;2.28e-10;1!UBERON:0004288;2.28e-10;1!UBERON:0002073;1.82e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.19e-27,3;UBERON:0000043,1.19e-27,3;UBERON:0007845,1.19e-27,3;UBERON:0000920,1.33e-13,3;UBERON:0005631,7.80e-11,14;UBERON:0000158,7.80e-11,14;UBERON:0005705,3.61e-10,1;UBERON:0008193,3.61e-10,1;UBERON:0010912,3.61e-10,1;UBERON:0002514,3.61e-10,1;UBERON:0003457,3.61e-10,1;UBERON:0008907,3.61e-10,1;UBERON:0008001,3.61e-10,1;UBERON:0007213,3.61e-10,1;UBERON:0009891,3.61e-10,1;UBERON:0007914,3.61e-10,1;UBERON:0009292,3.61e-10,1;UBERON:0003099,3.61e-10,1;UBERON:0007375,3.61e-10,1;UBERON:0003323,3.61e-10,1;UBERON:0010258,3.61e-10,1;UBERON:0007842,3.61e-10,1;UBERON:0009494,3.61e-10,1;UBERON:0010042,3.61e-10,1;UBERON:0010045,3.61e-10,1;UBERON:0010259,3.61e-10,1;UBERON:0010359,3.61e-10,1;UBERON:0009526,3.61e-10,1;UBERON:0002397,3.61e-10,1;UBERON:0003113,3.61e-10,1;UBERON:0003277,3.61e-10,1;UBERON:0001709,3.61e-10,1;UBERON:0004066,3.61e-10,1;UBERON:0002244,3.61e-10,1;UBERON:0005620,3.61e-10,1;UBERON:0004362,3.61e-10,1;UBERON:0010364,3.61e-10,1;UBERON:0010046,3.61e-10,1;UBERON:0005868,3.61e-10,1;UBERON:0007238,3.61e-10,1;UBERON:0004288,3.61e-10,1;UBERON:0004068,3.61e-10,1;UBERON:0010334,3.61e-10,1;UBERON:0003852,3.61e-10,1;UBERON:0010253,3.61e-10,1;UBERON:0004923,5.51e-10,66;UBERON:0002073,1.89e-08,5;UBERON:0005086,1.89e-08,5;UBERON:0008814,2.88e-08,18;UBERON:0010188,7.98e-07,6;UBERON:0002539,7.98e-07,6;UBERON:0008816,7.98e-07,6 | |||
|phase1_expression=0.726713517082227,1.71280419112787,0.140954404095971,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0,0,0,0.527533956456907,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.132409180813219,0.286836620748814,0,0.560677600142307,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0,0,0,0.624320153660641,0,0,0,0.323745888736263,0.140450806702248,0.204154171254893,0,0,0,1.48360157567134,0,0,0.168336113954066,0,0,0,0.919463387397059,0.150238058906597,0.113432183160021,0,0.640672166455702,0.635795703478686,0,0.412210116953756,0,0.37223371266318,0.168776332241266,0.0974370051611986,0,0.552299391853796,0,0.355009592516614,0.10075209822764,0,0,0.272746120590835,0,0,0.132529768321485,0,0,0,0,0,2.57296375277154,0,2.3218396401599,0,0.118306800039844,0.168584690078102,0.241011029883482,0.330881918197182,0,0.474541238222193,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0.1466765716419,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,1.45579603071565,1.96271887676878,0.788512075169673,0.234282829985426,0,0,0,0,0.184369168541703,0.781952530212746,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0.153461973288062,0.841980283299221,0.256278298511402,0.511707249066704,0.965123526861645,0,0.308419387605311,0.355123450626254,0.164254312027618,0,0.232420756919918,0,0,0,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.537101224341368,0.435050081742686,0.340906509664404,0.178064071293475,0,0,0.127612712494584,0,0.929691098594572,0,0,0,0,0,0,0,0,0,0.953150969619124,0,0.42793898803392,0,0,0.719489830333259,0.274537029736055,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0.424216295861138,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0,0,0.196498082026242,0,0,1.05553817648832,0.987884678879706,0,0,0,0,0,0.470719003883896,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,1.90995587790152,0.296964680832639,1.22864280839693,0,0,0,0.329607748453519,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89110145414349,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0.217294743844016,2.87101043758728,0.274792780205587,3.19820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.19351266257817,0.219267951258557,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0.701139929541673,0,0,0.251567901752575,0.889811221596536,0,0.302461847526478,0,0,0,0,0,0,0.265841714557995,0,0,0,0.406870733204662,0.545545977607678,0.107410557042488,0.464033759878494,0.796191777397232,0.800055529326307,0.343395705182793,0,0,0,0.214441591374926,0.260994291965212,0.453411851024545,0.694567422971502,0.489473409012935,0.358177682162975,0,0.877136198314828,0.176689145945881,0.771656153083659,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0.212574920101683,0,0,1.27201740261367,0,0,1.05802783107205,0.918736432059601,0,0,0,0,0,0,0,0,0,0,0,3.35024431835981,0.762764190934334,0,0,0,0,0,0,1.31017534008077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521574816907738,0,0,0.51215543128185,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0.475680363110274,0,0,0,0,0,0,0,0,0,0,0.4226557275834,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11598505450025,1.38652688589425,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0.342233301085281,0,0,0.332660356546013,0,0.213454691755431,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0.726713517082227,1.71280419112787,0.140954404095971,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0,0,0,0.527533956456907,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.132409180813219,0.286836620748814,0,0.560677600142307,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0,0,0,0.624320153660641,0,0,0,0.323745888736263,0.140450806702248,0.204154171254893,0,0,0,1.48360157567134,0,0,0.168336113954066,0,0,0,0.919463387397059,0.150238058906597,0.113432183160021,0,0.640672166455702,0.635795703478686,0,0.412210116953756,0,0.37223371266318,0.168776332241266,0.0974370051611986,0,0.552299391853796,0,0.355009592516614,0.10075209822764,0,0,0.272746120590835,0,0,0.132529768321485,0,0,0,0,0,2.57296375277154,0,2.3218396401599,0,0.118306800039844,0.168584690078102,0.241011029883482,0.330881918197182,0,0.474541238222193,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0.1466765716419,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,1.45579603071565,1.96271887676878,0.788512075169673,0.234282829985426,0,0,0,0,0.184369168541703,0.781952530212746,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0.153461973288062,0.841980283299221,0.256278298511402,0.511707249066704,0.965123526861645,0,0.308419387605311,0.355123450626254,0.164254312027618,0,0.232420756919918,0,0,0,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.537101224341368,0.435050081742686,0.340906509664404,0.178064071293475,0,0,0.127612712494584,0,0.929691098594572,0,0,0,0,0,0,0,0,0,0.953150969619124,0,0.42793898803392,0,0,0.719489830333259,0.274537029736055,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0.424216295861138,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0,0,0.196498082026242,0,0,1.05553817648832,0.987884678879706,0,0,0,0,0,0.470719003883896,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,1.90995587790152,0.296964680832639,1.22864280839693,0,0,0,0.329607748453519,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89110145414349,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0.217294743844016,2.87101043758728,0.274792780205587,3.19820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.19351266257817,0.219267951258557,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0.701139929541673,0,0,0.251567901752575,0.889811221596536,0,0.302461847526478,0,0,0,0,0,0,0.265841714557995,0,0,0,0.406870733204662,0.545545977607678,0.107410557042488,0.464033759878494,0.796191777397232,0.800055529326307,0.343395705182793,0,0,0,0.214441591374926,0.260994291965212,0.453411851024545,0.694567422971502,0.489473409012935,0.358177682162975,0,0.877136198314828,0.176689145945881,0.771656153083659,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0.212574920101683,0,0,1.27201740261367,0,0,1.05802783107205,0.918736432059601,0,0,0,0,0,0,0,0,0,0,0,3.35024431835981,0.762764190934334,0,0,0,0,0,0,1.31017534008077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521574816907738,0,0,0.51215543128185,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0.475680363110274,0,0,0,0,0,0,0,0,0,0,0.4226557275834,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11598505450025,1.38652688589425,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0.342233301085281,0,0,0.332660356546013,0,0.213454691755431,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr3:86992689..86992700,- | |short_description=p@chr3:86992689..86992700,- | ||
}} | }} |
Latest revision as of 23:47, 29 July 2015
Short description: | p@chr3:86992689..86992700, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:86992689..86992700, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.19e-27 | 3 |
tendon cell | 1.19e-27 | 3 |
chorionic membrane mesenchymal stem cell | 1.33e-13 | 3 |
smooth muscle cell of the pulmonary artery | 3.01e-10 | 1 |
hair follicle cell | 1.89e-08 | 5 |
amnion mesenchymal stem cell | 3.16e-08 | 5 |
extraembryonic cell | 5.06e-08 | 19 |
receptor cell | 4.66e-07 | 6 |
sensory epithelial cell | 4.66e-07 | 6 |
olfactory epithelial cell | 4.66e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 2.28e-10 | 1 |
spindle cell sarcoma | 4.33e-10 | 1 |