FFCP PHASE1:Hg19::chr8:42033546..42033576,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:42033546..42033576,- | |||
|coexpression_cluster_id=C471 | |||
|description=CAGE_peak_at_chr8:42033546..42033576,- | |description=CAGE_peak_at_chr8:42033546..42033576,- | ||
|id=chr8:42033546..42033576,- | |id=chr8:42033546..42033576,- | ||
|ontology_enrichment_celltype=CL:0000183!3.93e-15!59;CL:0000187!1.21e-14!54;CL:0000680!2.48e-14!57;CL:0000056!2.48e-14!57;CL:0000355!2.48e-14!57;CL:0000192!3.36e-13!42;CL:0000514!3.36e-13!42;CL:0000055!3.42e-12!180;CL:0000393!6.81e-12!60;CL:0000211!6.81e-12!60;CL:0000359!1.50e-10!32;CL:0000222!1.68e-07!119 | |ontology_enrichment_celltype=CL:0000183!3.93e-15!59;CL:0000187!1.21e-14!54;CL:0000680!2.48e-14!57;CL:0000056!2.48e-14!57;CL:0000355!2.48e-14!57;CL:0000192!3.36e-13!42;CL:0000514!3.36e-13!42;CL:0000055!3.42e-12!180;CL:0000393!6.81e-12!60;CL:0000211!6.81e-12!60;CL:0000359!1.50e-10!32;CL:0000222!1.68e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000359;3.69e-14;32!CL:0002595;1.60e-12;5!CL:0000192;9.07e-11;43!CL:1000306;4.28e-09;4!CL:0002547;4.28e-09;4!CL:0002539;5.61e-09;10!CL:0002593;6.85e-09;2!CL:0002195;5.77e-08;2!CL:0002571;5.77e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,4.36e-14,32;CL:0000192,1.48e-13,43;CL:0000514,1.48e-13,43;CL:0002595,1.08e-12,5;CL:0000680,2.72e-12,58;CL:0000056,2.72e-12,58;CL:0000355,2.72e-12,58;CL:0000187,1.75e-11,55;CL:0000393,5.11e-10,61;CL:0000211,5.11e-10,61;CL:1000306,4.13e-09,4;CL:0002547,4.13e-09,4;CL:0002539,7.18e-09,10;CL:0002593,7.58e-09,2;CL:0000222,3.88e-08,121;CL:0002195,8.89e-08,2;CL:0002571,8.89e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000514;9.07e-11;43 | |||
|ontology_enrichment_disease=DOID:2394!2.53e-07!14 | |ontology_enrichment_disease=DOID:2394!2.53e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:0060084;7.22e-13;3!DOID:127;7.22e-13;3!DOID:2394;2.87e-12;14!DOID:0060072;9.57e-10;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.56e-13,3;DOID:127,7.56e-13,3;DOID:2394,2.03e-12,14;DOID:0060072,9.90e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0005256!1.28e-15!143;UBERON:0001134!1.49e-13!61;UBERON:0002036!1.49e-13!61;UBERON:0003082!1.49e-13!61;UBERON:0002385!1.67e-13!63;UBERON:0001015!1.67e-13!63;UBERON:0000383!1.67e-13!63;UBERON:0001637!2.53e-13!42;UBERON:0003509!2.53e-13!42;UBERON:0004572!2.53e-13!42;UBERON:0004573!3.02e-13!33;UBERON:0004571!3.02e-13!33;UBERON:0004290!3.99e-13!70;UBERON:0000914!5.63e-13!83;UBERON:0002329!5.63e-13!83;UBERON:0003077!5.63e-13!83;UBERON:0003059!5.63e-13!83;UBERON:0007282!5.63e-13!83;UBERON:0009618!5.63e-13!83;UBERON:0007285!5.63e-13!83;UBERON:0000486!9.43e-12!82;UBERON:0000119!4.70e-11!312;UBERON:0003914!8.50e-11!118;UBERON:0001981!2.46e-10!60;UBERON:0007500!2.46e-10!60;UBERON:0004537!2.46e-10!60;UBERON:0006965!2.46e-10!60;UBERON:0002049!2.48e-10!79;UBERON:0007798!2.48e-10!79;UBERON:0004872!2.50e-10!84;UBERON:0000483!2.64e-10!309;UBERON:0002100!1.12e-09!216;UBERON:0000055!4.46e-09!69;UBERON:0000490!5.16e-09!138;UBERON:0000475!4.10e-08!365;UBERON:0001135!5.36e-08!15;UBERON:0005156!8.26e-08!59;UBERON:0000990!8.26e-08!59;UBERON:0000481!1.67e-07!347;UBERON:0003064!2.09e-07!37;UBERON:0000947!3.31e-07!21;UBERON:0010191!3.31e-07!21;UBERON:0003886!4.21e-07!63;UBERON:0004535!4.58e-07!110;UBERON:0000477!5.77e-07!286;UBERON:0001009!6.21e-07!113 | |ontology_enrichment_uberon=UBERON:0005256!1.28e-15!143;UBERON:0001134!1.49e-13!61;UBERON:0002036!1.49e-13!61;UBERON:0003082!1.49e-13!61;UBERON:0002385!1.67e-13!63;UBERON:0001015!1.67e-13!63;UBERON:0000383!1.67e-13!63;UBERON:0001637!2.53e-13!42;UBERON:0003509!2.53e-13!42;UBERON:0004572!2.53e-13!42;UBERON:0004573!3.02e-13!33;UBERON:0004571!3.02e-13!33;UBERON:0004290!3.99e-13!70;UBERON:0000914!5.63e-13!83;UBERON:0002329!5.63e-13!83;UBERON:0003077!5.63e-13!83;UBERON:0003059!5.63e-13!83;UBERON:0007282!5.63e-13!83;UBERON:0009618!5.63e-13!83;UBERON:0007285!5.63e-13!83;UBERON:0000486!9.43e-12!82;UBERON:0000119!4.70e-11!312;UBERON:0003914!8.50e-11!118;UBERON:0001981!2.46e-10!60;UBERON:0007500!2.46e-10!60;UBERON:0004537!2.46e-10!60;UBERON:0006965!2.46e-10!60;UBERON:0002049!2.48e-10!79;UBERON:0007798!2.48e-10!79;UBERON:0004872!2.50e-10!84;UBERON:0000483!2.64e-10!309;UBERON:0002100!1.12e-09!216;UBERON:0000055!4.46e-09!69;UBERON:0000490!5.16e-09!138;UBERON:0000475!4.10e-08!365;UBERON:0001135!5.36e-08!15;UBERON:0005156!8.26e-08!59;UBERON:0000990!8.26e-08!59;UBERON:0000481!1.67e-07!347;UBERON:0003064!2.09e-07!37;UBERON:0000947!3.31e-07!21;UBERON:0010191!3.31e-07!21;UBERON:0003886!4.21e-07!63;UBERON:0004535!4.58e-07!110;UBERON:0000477!5.77e-07!286;UBERON:0001009!6.21e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.93e-17;33!UBERON:0004571;7.93e-17;33!UBERON:0003834;1.60e-12;5!UBERON:0001533;1.60e-12;5!UBERON:0001637;1.99e-12;42!UBERON:0003509;1.99e-12;42!UBERON:0004572;1.99e-12;42!UBERON:0000947;5.18e-10;21!UBERON:0010191;5.18e-10;21!UBERON:0004797;4.28e-09;4!UBERON:0000415;4.28e-09;4!UBERON:0007240;4.28e-09;4!UBERON:0005742;4.28e-09;4!UBERON:0005734;4.28e-09;4!UBERON:0004664;4.28e-09;4!UBERON:0004663;4.28e-09;4!UBERON:0004237;5.61e-09;10!UBERON:0004695;5.61e-09;10!UBERON:0002111;5.61e-09;10!UBERON:0004178;5.61e-09;10!UBERON:0003513;5.99e-09;7!UBERON:0002456;6.85e-09;2!UBERON:0001135;3.68e-08;15!UBERON:0002118;2.28e-07;5!UBERON:0007500;7.64e-07;56!UBERON:0001981;7.64e-07;56!UBERON:0004537;7.64e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,8.66e-19,33;UBERON:0004571,8.66e-19,33;UBERON:0001637,2.29e-16,42;UBERON:0003509,2.29e-16,42;UBERON:0004572,2.29e-16,42;UBERON:0003834,1.08e-12,5;UBERON:0001533,1.08e-12,5;UBERON:0001134,2.93e-11,62;UBERON:0002036,2.93e-11,62;UBERON:0003082,2.93e-11,62;UBERON:0005256,5.02e-11,122;UBERON:0002385,8.58e-11,64;UBERON:0001015,8.58e-11,64;UBERON:0000383,8.58e-11,64;UBERON:0007500,1.23e-10,59;UBERON:0001981,1.23e-10,59;UBERON:0004537,1.23e-10,59;UBERON:0006965,1.23e-10,59;UBERON:0000947,6.11e-10,21;UBERON:0010191,6.11e-10,21;UBERON:0003914,1.63e-09,117;UBERON:0007503,2.26e-09,78;UBERON:0002329,2.27e-09,71;UBERON:0003059,2.27e-09,71;UBERON:0007282,2.27e-09,71;UBERON:0004290,2.27e-09,71;UBERON:0009618,2.27e-09,71;UBERON:0003077,3.43e-09,72;UBERON:0007285,3.43e-09,72;UBERON:0000415,4.13e-09,4;UBERON:0007240,4.13e-09,4;UBERON:0005742,4.13e-09,4;UBERON:0005734,4.13e-09,4;UBERON:0004664,4.13e-09,4;UBERON:0004663,4.13e-09,4;UBERON:0000490,4.25e-09,148;UBERON:0003513,4.55e-09,7;UBERON:0007524,5.13e-09,73;UBERON:0004237,7.18e-09,10;UBERON:0004695,7.18e-09,10;UBERON:0002111,7.18e-09,10;UBERON:0004178,7.18e-09,10;UBERON:0002456,7.58e-09,2;UBERON:0003104,8.50e-09,160;UBERON:0009142,8.50e-09,160;UBERON:0000055,8.81e-09,68;UBERON:0004872,9.78e-09,83;UBERON:0001135,5.16e-08,15;UBERON:0002118,1.59e-07,5;UBERON:0000486,1.65e-07,83;UBERON:0002049,3.09e-07,78;UBERON:0007798,3.09e-07,78;UBERON:0003498,3.71e-07,5;UBERON:0005985,3.71e-07,5;UBERON:0005156,9.77e-07,59;UBERON:0000990,9.77e-07,59 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.281908808191942,0,0,0,0,0,0,0,0,0.655324116390517,0.263766978228454,0.247532705920093,0,2.01697543935533,1.20538905604795,0.730310090387373,1.46379839637152,0,0.204000691244253,0,0,0.547497700291537,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0.189069634328136,0.443458794925128,0.527008714158756,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,1.49091585508596,1.39293562831038,0.926864265692532,12.333974692199,2.83734705758686,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0.161872944368132,0.561803226808994,0,0.122834317311768,0,0,0.247266929278557,0.910161361938026,0.718618141816238,0.505008341862199,0.250237039743928,0,0,0.612975591598039,0.300476117813194,0.340296549480063,0,0,0,0,0.206105058476878,0,0.18611685633159,0.675105328965065,0,0,0,0,0.355009592516614,0.201504196455281,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,0,0,0,0,0,0,0.857839051492628,0,0,0,0.0925884451585296,0,1.03993478527958,0,0,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0.383382679165211,0,0.264145302039678,0,0.144119953416961,0,0.063497894292169,0,0,0,0.205654985406647,0,0,0.112131084345361,0.87192013766656,0.1466765716419,0,0,0,0.531876233169741,2.08014873822732,0,0,0,1.42977993658148,0,0,0,1.06617584622764,0,1.80863626235752,2.61460037580088,0.399891964728228,0,0,0,0,0,1.42636905040718,1.30303176000821,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,2.27407504055985,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0.30239029332968,0,0,0.561320188866147,0.768834895534206,0,0.64341568457443,0,0.308419387605311,0.177561725313127,0,0,0.232420756919918,0,2.00506470303285,0,2.29628896329214,0.910455840033585,1.31124414959424,0.902399225814824,0.231046011313244,0.784349769176855,1.46139224653261,0.633309773357254,0,0.340187410553031,0.431831832204279,0,1.08378575017541,0,0.509752546090077,0,1.56712328305525,0,0,0,0.328014645699706,0,0,0,0,0,0,1.6068392984416,0,0.308097234229289,0,0.275673144969061,0.107420244868274,0,0.0852266274161009,0.267096106940212,0,0,0.127612712494584,0,0,13.8517432605482,0,1.23213432070436,0.532306030317022,0.869932992075073,0.74129687641568,0.715624433709956,0,0,0,0.511795582622668,0.42793898803392,0.318203247925937,0,0.899362287916574,1.09814811894422,0.589062011728432,1.41527737101321,1.58510321173008,0.842516912477962,0,5.11798328225697,3.16950440270266,0.409499734223957,2.2624869112594,3.39024349860728,0,1.99031692572366,5.26141062304515,0,0,0.202910376962704,0,0,0.430234056612155,0,0.35667105148125,0.354761064070598,0,0,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0.796991953004279,0,0,0.715880777515084,0,0.622079175323615,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0.394584402849391,1.20990716048664,0.30607276163049,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0.685209623233754,0,0.0633107959558787,0,0,0.640358984218058,0.19980960958213,0,0,0.171594997861965,0,0,0.235694034616795,0.407712618220842,0.523014231561666,0,0,0.600420288709789,0,0,0,0,0.558564802544508,0.229160424011684,0,0.199679000498991,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.157363764404994,0.211200673038813,0,0,0,0,0,10.3169924333205,13.8275438592203,18.2888921661269,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0.124980407962107,0.606596470166591,0.285465333544967,6.11691131215246,0,0,0.447764408660622,0,1.10961172300523,0,0,0.889811221596536,0,1.05861646634267,0.15543720058278,0.295710299979268,0.63718706865481,0,0.310525913752519,4.14706207840855,1.32920857278997,1.5652351854352,0,18.659455396271,3.66183659884195,0.181848659202559,0.429642228169954,1.85613503951397,5.97143833047924,3.20022211730523,0.343395705182793,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0.179088841081487,0,0,1.41351316756705,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8374728641192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,1.63771917510097,0,0,0,0.206686796501184,0,0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| ||
|short_description=p@chr8:42033546..42033576,- | |short_description=p@chr8:42033546..42033576,- | ||
}} | }} |
Latest revision as of 18:29, 31 July 2015
Short description: | p@chr8:42033546..42033576, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:42033546..42033576, - |
Coexpression cluster: | C471_Smooth_Fibroblast_leiomyoma_mesenchymal_Mesothelial_meningioma_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 4.36e-14 | 32 |
smooth muscle cell | 1.48e-13 | 43 |
smooth muscle myoblast | 1.48e-13 | 43 |
smooth muscle cell of the subclavian artery | 1.08e-12 | 5 |
muscle precursor cell | 2.72e-12 | 58 |
myoblast | 2.72e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.72e-12 | 58 |
muscle cell | 1.75e-11 | 55 |
electrically responsive cell | 5.11e-10 | 61 |
electrically active cell | 5.11e-10 | 61 |
fibroblast of tunica adventitia of artery | 4.13e-09 | 4 |
fibroblast of the aortic adventitia | 4.13e-09 | 4 |
aortic smooth muscle cell | 7.18e-09 | 10 |
smooth muscle cell of the internal thoracic artery | 7.58e-09 | 2 |
mesodermal cell | 3.88e-08 | 121 |
hepatic stem cell | 8.89e-08 | 2 |
hepatic mesenchymal stem cell | 8.89e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.56e-13 | 3 |
leiomyoma | 7.56e-13 | 3 |
ovarian cancer | 2.03e-12 | 14 |
benign neoplasm | 9.90e-10 | 4 |