FFCP PHASE1:Mm9::chr5:24414192..24414246,-: Difference between revisions
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{{FFCP|EntrezGene=108099|HGNC=|UniProt=|association_with_transcript=21bp_to_ENSMUST00000148531_5end|description=CAGE_peak_3_at_Prkag2_5end|id=chr5:24414192..24414246,-|ontology_enrichment_celltype=CL:0000117!3.67e-10!23;CL:0000337!3.67e-10!23;CL:0000221!2.97e-08!44;CL:0000133!2.97e-08!44;CL:0002319!5.62e-08!43;CL:0000540!1.06e-07!33;CL:0000047!1.06e-07!33;CL:0000031!1.06e-07!33;CL:0000404!1.06e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.08e-10,23;CL:0000337,3.08e-10,23;CL:0000221,2.88e-08,44;CL:0000133,2.88e-08,44;CL:0002319,5.46e-08,43;CL:0000540,9.33e-08,33;CL:0000047,9.33e-08,33;CL:0000031,9.33e-08,33;CL:0000404,9.33e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.84e-16!73;UBERON:0005743!2.84e-16!73;UBERON:0001049!7.85e-16!52;UBERON:0005068!7.85e-16!52;UBERON:0006241!7.85e-16!52;UBERON:0007135!7.85e-16!52;UBERON:0000073!8.17e-15!75;UBERON:0001016!8.17e-15!75;UBERON:0000955!4.06e-13!50;UBERON:0006238!4.06e-13!50;UBERON:0002616!7.08e-13!49;UBERON:0002020!1.38e-12!34;UBERON:0000033!1.95e-12!63;UBERON:0002346!2.68e-12!71;UBERON:0003075!2.68e-12!71;UBERON:0007284!2.68e-12!71;UBERON:0003056!2.99e-11!49;UBERON:0003080!3.67e-11!40;UBERON:0002780!6.53e-11!39;UBERON:0001890!6.53e-11!39;UBERON:0006240!6.53e-11!39;UBERON:0002791!2.99e-10!29;UBERON:0003528!2.99e-10!29;UBERON:0001893!2.99e-10!29;UBERON:0004121!7.01e-09!102;UBERON:0000924!7.01e-09!102;UBERON:0006601!7.01e-09!102;UBERON:0007811!9.33e-09!86;UBERON:0000153!1.30e-07!94;UBERON:0000956!2.11e-07!21;UBERON:0001869!2.11e-07!21;UBERON:0000203!2.11e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.78e-17,92;UBERON:0001017,2.10e-16,73;UBERON:0001049,5.86e-16,52;UBERON:0005068,5.86e-16,52;UBERON:0006241,5.86e-16,52;UBERON:0007135,5.86e-16,52;UBERON:0002346,1.83e-15,64;UBERON:0003075,1.83e-15,64;UBERON:0007284,1.83e-15,64;UBERON:0000073,2.29e-15,54;UBERON:0001016,7.01e-15,75;UBERON:0000955,2.56e-13,47;UBERON:0006238,2.56e-13,47;UBERON:0002616,4.45e-13,46;UBERON:0002020,1.10e-12,34;UBERON:0010371,4.25e-12,73;UBERON:0003056,2.60e-11,49;UBERON:0003080,3.01e-11,40;UBERON:0002780,5.39e-11,39;UBERON:0001890,5.39e-11,39;UBERON:0006240,5.39e-11,39;UBERON:0004121,1.04e-10,95;UBERON:0000924,1.04e-10,95;UBERON:0006601,1.04e-10,95;UBERON:0003528,2.50e-10,29;UBERON:0002791,2.50e-10,29;UBERON:0001893,2.50e-10,29;UBERON:0000956,1.88e-07,21;UBERON:0001869,1.88e-07,21;UBERON:0000203,1.88e-07,21|phase1_expression=6.40595388419176,3.14077866875425,1.81999695755814,6.95667686005709,5.00895729946347,2.18243053485457,2.10251376535973,5.55230290798778,0.703943610758334,0.70219357896598,0.68487187290202,1.51567102091139,1.71200729931206,2.62261207256992,0.333109761815663,0.202475267389826,0,1.57731082679119,2.60517423850904,0.42438965179803,1.9559956734746,1.48936426801328,1.82839852397255,3.67982572424835,3.21172993494038,3.44539178469012,4.73838195774982,3.878482188346,2.47030445293286,4.28451220591882,2.66076612786366,1.90509202037889,1.84519436275371,0,1.1554064790051,1.49611180822643,1.42918549383658,0.837063261473815,0.7813353445238,2.09409497589519,0.588231488031014,0.683045484958446,0.485510353031154,1.38486499773135,2.53442328048786,2.0190142737785,3.12956537739216,5.88667922227206,7.24964403023757,8.74934545834275,10.3589952002768,1.43752564364972,1.8456086666351,0,1.00828139742739,2.31533492432352,0,2.57836046138721,9.71119012126069,8.46385566835253,8.87363964908651,1.0165335962074,3.55717918444456,0.449949858640699,0,0,2.99600110518405,5.37905627450176,10.2652716185393,8.10035629990144,8.62332341540666,7.9982275633065,5.74258206474195,8.08439274818697,7.28425579738596,5.51531271966013,2.20231761998777,3.31987079021488,3.68655679814984,10.4190167306853,11.4359554503012,10.4182674111352,4.4669279840221,3.93933827022176,5.04234217663473,6.18720029494702,7.54569908235246,8.20157561631323,0.302904773332736,0.529000920747499,1.15945795480671,0,0,0,0,0,1.54488862144927,3.40860645156115,1.81850203222008,1.7666978725517,5.0703631119605,1.28326477414318,0,0,1.29894624606728,1.26679932737549,0,1.37020655662872,2.07150306917737,0.445326417194474,1.56136794089522,1.21786191324856,1.15307748628029,1.95939432718409,1.99900802130698,1.13099932196708,1.23597483867187,2.16899035379867,0.884610551949874,1.61766849947409,1.10420759230197,0.484875253135222,0,4.09893115816166,9.00620839297857,4.34276993854605,1.07833612055328,0,0.254140454146129,4.6435098215495,3.66000482254901,7.91622418311046,5.56237824615285,4.34716277461562,5.61027720310812,4.2182728397617,1.62942982160506,0.995255764880744,0.758168275301024,0.420883711772948,4.81445638962004,5.51765050640335,5.40186389416048,4.82255417074288,2.24520447199382,4.22775276940004,2.99845518591132,2.06962696591213,3.23351989399263,2.83659120251729,2.11141348996739,1.09597866213787,1.94633074457919,1.0447564995665,1.23469281844766,3.18454826909589,0,0,0.284163499395593,13.2560494422721,11.2572508790926,12.42428224081,12.7842157216014,13.3799677588235,12.3413690309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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:108099 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=21bp_to_ENSMUST00000148531_5end | |||
|cluster_id=chr5:24414192..24414246,- | |||
|description=CAGE_peak_3_at_Prkag2_5end | |||
|id=chr5:24414192..24414246,- | |||
|ontology_enrichment_celltype=CL:0000117!3.67e-10!23;CL:0000337!3.67e-10!23;CL:0000221!2.97e-08!44;CL:0000133!2.97e-08!44;CL:0002319!5.62e-08!43;CL:0000540!1.06e-07!33;CL:0000047!1.06e-07!33;CL:0000031!1.06e-07!33;CL:0000404!1.06e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.08e-10,23;CL:0000337,3.08e-10,23;CL:0000221,2.88e-08,44;CL:0000133,2.88e-08,44;CL:0002319,5.46e-08,43;CL:0000540,9.33e-08,33;CL:0000047,9.33e-08,33;CL:0000031,9.33e-08,33;CL:0000404,9.33e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.84e-16!73;UBERON:0005743!2.84e-16!73;UBERON:0001049!7.85e-16!52;UBERON:0005068!7.85e-16!52;UBERON:0006241!7.85e-16!52;UBERON:0007135!7.85e-16!52;UBERON:0000073!8.17e-15!75;UBERON:0001016!8.17e-15!75;UBERON:0000955!4.06e-13!50;UBERON:0006238!4.06e-13!50;UBERON:0002616!7.08e-13!49;UBERON:0002020!1.38e-12!34;UBERON:0000033!1.95e-12!63;UBERON:0002346!2.68e-12!71;UBERON:0003075!2.68e-12!71;UBERON:0007284!2.68e-12!71;UBERON:0003056!2.99e-11!49;UBERON:0003080!3.67e-11!40;UBERON:0002780!6.53e-11!39;UBERON:0001890!6.53e-11!39;UBERON:0006240!6.53e-11!39;UBERON:0002791!2.99e-10!29;UBERON:0003528!2.99e-10!29;UBERON:0001893!2.99e-10!29;UBERON:0004121!7.01e-09!102;UBERON:0000924!7.01e-09!102;UBERON:0006601!7.01e-09!102;UBERON:0007811!9.33e-09!86;UBERON:0000153!1.30e-07!94;UBERON:0000956!2.11e-07!21;UBERON:0001869!2.11e-07!21;UBERON:0000203!2.11e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.78e-17,92;UBERON:0001017,2.10e-16,73;UBERON:0001049,5.86e-16,52;UBERON:0005068,5.86e-16,52;UBERON:0006241,5.86e-16,52;UBERON:0007135,5.86e-16,52;UBERON:0002346,1.83e-15,64;UBERON:0003075,1.83e-15,64;UBERON:0007284,1.83e-15,64;UBERON:0000073,2.29e-15,54;UBERON:0001016,7.01e-15,75;UBERON:0000955,2.56e-13,47;UBERON:0006238,2.56e-13,47;UBERON:0002616,4.45e-13,46;UBERON:0002020,1.10e-12,34;UBERON:0010371,4.25e-12,73;UBERON:0003056,2.60e-11,49;UBERON:0003080,3.01e-11,40;UBERON:0002780,5.39e-11,39;UBERON:0001890,5.39e-11,39;UBERON:0006240,5.39e-11,39;UBERON:0004121,1.04e-10,95;UBERON:0000924,1.04e-10,95;UBERON:0006601,1.04e-10,95;UBERON:0003528,2.50e-10,29;UBERON:0002791,2.50e-10,29;UBERON:0001893,2.50e-10,29;UBERON:0000956,1.88e-07,21;UBERON:0001869,1.88e-07,21;UBERON:0000203,1.88e-07,21 | |||
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| |||
|short_description=p3@Prkag2 | |||
}} |
Revision as of 05:26, 4 August 2015
Short description: | p3@Prkag2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Prkag2_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENSMUST00000148531_5end |
EntrezGene: | 108099 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.08e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.08e-10 | 23 |
ectodermal cell | 2.88e-08 | 44 |
neurectodermal cell | 2.88e-08 | 44 |
neural cell | 5.46e-08 | 43 |
neuron | 9.33e-08 | 33 |
neuronal stem cell | 9.33e-08 | 33 |
neuroblast | 9.33e-08 | 33 |
electrically signaling cell | 9.33e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.78e-17 | 92 |
central nervous system | 2.10e-16 | 73 |
neural tube | 5.86e-16 | 52 |
neural rod | 5.86e-16 | 52 |
future spinal cord | 5.86e-16 | 52 |
neural keel | 5.86e-16 | 52 |
neurectoderm | 1.83e-15 | 64 |
neural plate | 1.83e-15 | 64 |
presumptive neural plate | 1.83e-15 | 64 |
regional part of nervous system | 2.29e-15 | 54 |
nervous system | 7.01e-15 | 75 |
brain | 2.56e-13 | 47 |
future brain | 2.56e-13 | 47 |
regional part of brain | 4.45e-13 | 46 |
gray matter | 1.10e-12 | 34 |
ecto-epithelium | 4.25e-12 | 73 |
pre-chordal neural plate | 2.60e-11 | 49 |
anterior neural tube | 3.01e-11 | 40 |
regional part of forebrain | 5.39e-11 | 39 |
forebrain | 5.39e-11 | 39 |
future forebrain | 5.39e-11 | 39 |
ectoderm-derived structure | 1.04e-10 | 95 |
ectoderm | 1.04e-10 | 95 |
presumptive ectoderm | 1.04e-10 | 95 |
brain grey matter | 2.50e-10 | 29 |
regional part of telencephalon | 2.50e-10 | 29 |
telencephalon | 2.50e-10 | 29 |
cerebral cortex | 1.88e-07 | 21 |
cerebral hemisphere | 1.88e-07 | 21 |
pallium | 1.88e-07 | 21 |