FFCP PHASE1:Mm9::chr9:106356211..106356242,+: Difference between revisions
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{{FFCP|EntrezGene=59092|HGNC=|MCL_coexpression_id=1773|UniProt=P57724,Q8BP63|association_with_transcript=23bp_to_ENSMUST00000024260,uc009rjt.2_5end|description=CAGE_peak_1_at_Pcbp4_5end|id=chr9:106356211..106356242,+|ontology_enrichment_celltype=CL:0000221!1.50e-22!44;CL:0000133!1.50e-22!44;CL:0002319!8.61e-22!43;CL:0000055!3.14e-21!50;CL:0000393!8.31e-17!39;CL:0000211!8.31e-17!39;CL:0000540!4.79e-16!33;CL:0000047!4.79e-16!33;CL:0000031!4.79e-16!33;CL:0000404!4.79e-16!33;CL:0002321!3.82e-10!70;CL:0000220!3.82e-10!70;CL:0000117!4.11e-10!23;CL:0000337!4.11e-10!23;CL:0000107!8.25e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,1.38e-22,44;CL:0000133,1.38e-22,44;CL:0002319,7.94e-22,43;CL:0000393,7.81e-17,39;CL:0000211,7.81e-17,39;CL:0000540,4.52e-16,33;CL:0000047,4.52e-16,33;CL:0000031,4.52e-16,33;CL:0000404,4.52e-16,33;CL:0002321,2.72e-10,70;CL:0000117,3.97e-10,23;CL:0000337,3.97e-10,23;CL:0000107,8.07e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.57e-23!102;UBERON:0000924!3.57e-23!102;UBERON:0006601!3.57e-23!102;UBERON:0000073!3.14e-22!75;UBERON:0001016!3.14e-22!75;UBERON:0001017!5.29e-21!73;UBERON:0005743!5.29e-21!73;UBERON:0002346!3.93e-16!71;UBERON:0003075!3.93e-16!71;UBERON:0007284!3.93e-16!71;UBERON:0000033!2.65e-14!63;UBERON:0003056!3.64e-12!49;UBERON:0001049!6.58e-11!52;UBERON:0005068!6.58e-11!52;UBERON:0006241!6.58e-11!52;UBERON:0007135!6.58e-11!52;UBERON:0002616!1.25e-09!49;UBERON:0000955!1.99e-09!50;UBERON:0006238!1.99e-09!50;UBERON:0000010!6.58e-08!11;UBERON:0000153!1.19e-07!94;UBERON:0003080!1.41e-07!40;UBERON:0002780!1.78e-07!39;UBERON:0001890!1.78e-07!39;UBERON:0006240!1.78e-07!39;UBERON:0000020!3.83e-07!12;UBERON:0001032!3.83e-07!12;UBERON:0004456!3.83e-07!12;UBERON:0002020!7.24e-07!34;UBERON:0002410!8.25e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.02e-24,95;UBERON:0000924,2.02e-24,95;UBERON:0006601,2.02e-24,95;UBERON:0001016,2.89e-22,75;UBERON:0001017,4.90e-21,73;UBERON:0010314,1.18e-19,92;UBERON:0002346,1.46e-17,64;UBERON:0003075,1.46e-17,64;UBERON:0007284,1.46e-17,64;UBERON:0010371,4.71e-16,73;UBERON:0003056,3.48e-12,49;UBERON:0000073,2.21e-11,54;UBERON:0001049,6.34e-11,52;UBERON:0005068,6.34e-11,52;UBERON:0006241,6.34e-11,52;UBERON:0007135,6.34e-11,52;UBERON:0002616,6.30e-09,46;UBERON:0000955,9.97e-09,47;UBERON:0006238,9.97e-09,47;UBERON:0000010,6.41e-08,11;UBERON:0003080,1.38e-07,40;UBERON:0002780,1.74e-07,39;UBERON:0001890,1.74e-07,39;UBERON:0006240,1.74e-07,39;UBERON:0000020,3.74e-07,12;UBERON:0001032,3.74e-07,12;UBERON:0004456,3.74e-07,12;UBERON:0002020,7.08e-07,34;UBERON:0002410,8.07e-07,9|phase1_expression=99.2922852049723,1.04692622291808,0.909998478779072,0,0,4.70061961353291,4.20502753071946,0.387369970324729,3.801295498095,3.5109678948299,0.171217968225505,0.159544317990673,0,0.0874204024189974,0.333109761815663,0,0,0.157731082679119,0,0,9.60989178707088,2.78014663362479,4.4403964153619,2.23989391910769,1.14704640533585,0.57423196411502,1.29228598847722,1.939241094173,0.950117097281869,1.00812051903972,1.77384408524244,8.89042942843484,12.3012957516914,15.8481681015439,0,0.498703936075477,0,0,0,0,0,0,0,28.9562681343828,29.5006869848787,31.0194011153242,122.053049718294,137.791898832442,113.577756473722,100.714687720479,86.9315678293501,126.502256641175,0.167782606057736,0,0.672187598284928,95.4432507693363,48.7106847895886,39.1910790130856,117.545863759426,150.762429092529,144.513559999409,110.463317454537,107.604670329448,10.7987966073768,19.7773272513395,15.6305625288142,103.062438018331,116.418146512431,85.5439301544941,100.444418118778,96.9598071829871,61.4149616468178,75.9787780873551,99.2175473641128,98.4332987357288,112.144691966423,79.2834343195599,32.6879585498081,44.3922881110544,131.490628867003,107.772444163639,93.24349332966,51.0904888172527,37.7050948721226,40.0331409175242,80.1389752488376,54.5283537460564,71.3909877510901,160.160898899684,98.8476006196755,8.11620568364698,0,1.3599426674155,2.69851595818909,0,0,9.26933172869562,46.3570477412317,49.6191268791479,41.3407302177098,165.91354849693,24.3820307087204,38.2207859559969,35.5533351576666,3.24736561516821,3.29367825117628,4.04419556011827,3.9964357901671,1.29468941823586,4.45326417194474,40.2485958097435,37.1447883540812,16.6043158024362,14.6200961336044,13.8754674420132,2.76466500925286,5.93267922562497,9.54355755671417,2.65383165584962,18.6031877439521,7.95029466457417,6.78825354389311,3.72783522436244,18.737971008739,23.0391377494801,1.27728527604296,0.239630249011841,0,0.889491589511453,31.4560342750128,27.9075367719362,44.7329493521797,20.3374454624963,13.8086346958378,38.6485762880782,33.4217001919581,18.2292461292066,5.22509276562391,2.52722758433675,70.2875798660823,126.737311445673,159.092256267963,151.792375425909,99.9172942250791,119.336019511429,148.099460649286,171.942664567102,164.276640419275,133.652155618362,86.4214786366934,64.9259648164971,65.1011325309897,38.3705203931325,35.1734688187388,25.311202778177,22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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:59092 | |||
|HGNC= | |||
|MCL_coexpression_id=1773 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P57724,uniprot:Q8BP63 | |||
|association_with_transcript=23bp_to_ENSMUST00000024260,uc009rjt.2_5end | |||
|cluster_id=chr9:106356211..106356242,+ | |||
|description=CAGE_peak_1_at_Pcbp4_5end | |||
|id=chr9:106356211..106356242,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.50e-22!44;CL:0000133!1.50e-22!44;CL:0002319!8.61e-22!43;CL:0000055!3.14e-21!50;CL:0000393!8.31e-17!39;CL:0000211!8.31e-17!39;CL:0000540!4.79e-16!33;CL:0000047!4.79e-16!33;CL:0000031!4.79e-16!33;CL:0000404!4.79e-16!33;CL:0002321!3.82e-10!70;CL:0000220!3.82e-10!70;CL:0000117!4.11e-10!23;CL:0000337!4.11e-10!23;CL:0000107!8.25e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.38e-22,44;CL:0000133,1.38e-22,44;CL:0002319,7.94e-22,43;CL:0000393,7.81e-17,39;CL:0000211,7.81e-17,39;CL:0000540,4.52e-16,33;CL:0000047,4.52e-16,33;CL:0000031,4.52e-16,33;CL:0000404,4.52e-16,33;CL:0002321,2.72e-10,70;CL:0000117,3.97e-10,23;CL:0000337,3.97e-10,23;CL:0000107,8.07e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.57e-23!102;UBERON:0000924!3.57e-23!102;UBERON:0006601!3.57e-23!102;UBERON:0000073!3.14e-22!75;UBERON:0001016!3.14e-22!75;UBERON:0001017!5.29e-21!73;UBERON:0005743!5.29e-21!73;UBERON:0002346!3.93e-16!71;UBERON:0003075!3.93e-16!71;UBERON:0007284!3.93e-16!71;UBERON:0000033!2.65e-14!63;UBERON:0003056!3.64e-12!49;UBERON:0001049!6.58e-11!52;UBERON:0005068!6.58e-11!52;UBERON:0006241!6.58e-11!52;UBERON:0007135!6.58e-11!52;UBERON:0002616!1.25e-09!49;UBERON:0000955!1.99e-09!50;UBERON:0006238!1.99e-09!50;UBERON:0000010!6.58e-08!11;UBERON:0000153!1.19e-07!94;UBERON:0003080!1.41e-07!40;UBERON:0002780!1.78e-07!39;UBERON:0001890!1.78e-07!39;UBERON:0006240!1.78e-07!39;UBERON:0000020!3.83e-07!12;UBERON:0001032!3.83e-07!12;UBERON:0004456!3.83e-07!12;UBERON:0002020!7.24e-07!34;UBERON:0002410!8.25e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.02e-24,95;UBERON:0000924,2.02e-24,95;UBERON:0006601,2.02e-24,95;UBERON:0001016,2.89e-22,75;UBERON:0001017,4.90e-21,73;UBERON:0010314,1.18e-19,92;UBERON:0002346,1.46e-17,64;UBERON:0003075,1.46e-17,64;UBERON:0007284,1.46e-17,64;UBERON:0010371,4.71e-16,73;UBERON:0003056,3.48e-12,49;UBERON:0000073,2.21e-11,54;UBERON:0001049,6.34e-11,52;UBERON:0005068,6.34e-11,52;UBERON:0006241,6.34e-11,52;UBERON:0007135,6.34e-11,52;UBERON:0002616,6.30e-09,46;UBERON:0000955,9.97e-09,47;UBERON:0006238,9.97e-09,47;UBERON:0000010,6.41e-08,11;UBERON:0003080,1.38e-07,40;UBERON:0002780,1.74e-07,39;UBERON:0001890,1.74e-07,39;UBERON:0006240,1.74e-07,39;UBERON:0000020,3.74e-07,12;UBERON:0001032,3.74e-07,12;UBERON:0004456,3.74e-07,12;UBERON:0002020,7.08e-07,34;UBERON:0002410,8.07e-07,9 | |||
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| |||
|short_description=p1@Pcbp4 | |||
}} |
Revision as of 12:06, 4 August 2015
Short description: | p1@Pcbp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pcbp4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1773 |
Association with transcript: | 23bp_to_ENSMUST00000024260, uc009rjt.2_5end |
EntrezGene: | 59092 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.38e-22 | 44 |
neurectodermal cell | 1.38e-22 | 44 |
neural cell | 7.94e-22 | 43 |
electrically responsive cell | 7.81e-17 | 39 |
electrically active cell | 7.81e-17 | 39 |
neuron | 4.52e-16 | 33 |
neuronal stem cell | 4.52e-16 | 33 |
neuroblast | 4.52e-16 | 33 |
electrically signaling cell | 4.52e-16 | 33 |
embryonic cell | 2.72e-10 | 70 |
CNS neuron (sensu Vertebrata) | 3.97e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.97e-10 | 23 |
autonomic neuron | 8.07e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.02e-24 | 95 |
ectoderm | 2.02e-24 | 95 |
presumptive ectoderm | 2.02e-24 | 95 |
nervous system | 2.89e-22 | 75 |
central nervous system | 4.90e-21 | 73 |
structure with developmental contribution from neural crest | 1.18e-19 | 92 |
neurectoderm | 1.46e-17 | 64 |
neural plate | 1.46e-17 | 64 |
presumptive neural plate | 1.46e-17 | 64 |
ecto-epithelium | 4.71e-16 | 73 |
pre-chordal neural plate | 3.48e-12 | 49 |
regional part of nervous system | 2.21e-11 | 54 |
neural tube | 6.34e-11 | 52 |
neural rod | 6.34e-11 | 52 |
future spinal cord | 6.34e-11 | 52 |
neural keel | 6.34e-11 | 52 |
regional part of brain | 6.30e-09 | 46 |
brain | 9.97e-09 | 47 |
future brain | 9.97e-09 | 47 |
peripheral nervous system | 6.41e-08 | 11 |
anterior neural tube | 1.38e-07 | 40 |
regional part of forebrain | 1.74e-07 | 39 |
forebrain | 1.74e-07 | 39 |
future forebrain | 1.74e-07 | 39 |
sense organ | 3.74e-07 | 12 |
sensory system | 3.74e-07 | 12 |
entire sense organ system | 3.74e-07 | 12 |
gray matter | 7.08e-07 | 34 |
autonomic nervous system | 8.07e-07 | 9 |