FFCP PHASE1:Mm9::chr4:116793860..116793890,-: Difference between revisions
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{{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=2264|UniProt=|association_with_transcript=0bp_to_ENSMUST00000153303_5end|description=CAGE_peak_1_at_ENSMUST00000153303_5end|id=chr4:116793860..116793890,-|ontology_enrichment_celltype=CL:0000988!1.11e-11!32;CL:0002032!1.11e-11!32;CL:0000037!1.11e-11!32;CL:0000566!1.11e-11!32;CL:0000837!1.11e-11!32;CL:0002031!3.53e-10!25;CL:0002320!2.39e-08!46;CL:0000134!2.39e-08!46;CL:0000838!8.82e-08!12;CL:0000542!1.99e-07!13;CL:0000051!1.99e-07!13;CL:0000084!2.65e-07!11;CL:0000827!2.65e-07!11;CL:0000219!2.88e-07!54;CL:0000791!3.53e-07!9;CL:0000789!3.53e-07!9;CL:0002420!3.53e-07!9;CL:0002419!3.53e-07!9;CL:0000790!3.53e-07!9;CL:0000738!4.65e-07!17;CL:0002087!4.65e-07!17|ontology_enrichment_celltype_v019_2=CL:0000988,1.14e-12,32;CL:0002032,1.14e-12,32;CL:0000037,1.14e-12,32;CL:0000837,1.14e-12,32;CL:0002031,3.95e-11,25;CL:0002320,6.28e-09,46;CL:0000134,6.28e-09,46;CL:0000838,4.98e-08,12;CL:0000542,1.16e-07,13;CL:0000051,1.16e-07,13;CL:0000738,1.43e-07,17;CL:0002087,1.43e-07,17;CL:0000084,1.56e-07,11;CL:0000827,1.56e-07,11;CL:0000219,1.78e-07,54;CL:0000791,2.10e-07,9;CL:0000789,2.10e-07,9;CL:0002420,2.10e-07,9;CL:0002419,2.10e-07,9;CL:0000790,2.10e-07,9;CL:0000624,7.86e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!7.27e-16!48;UBERON:0002390!1.88e-15!45;UBERON:0003061!1.88e-15!45;UBERON:0004177!7.31e-10!29;UBERON:0002405!1.99e-09!70;UBERON:0002384!2.39e-08!46;UBERON:0002370!6.36e-08!23;UBERON:0000974!6.36e-08!23;UBERON:0004807!6.36e-08!23;UBERON:0005058!6.36e-08!23;UBERON:0003351!6.36e-08!23;UBERON:0009113!6.36e-08!23;UBERON:0003295!6.36e-08!23;UBERON:0009722!6.36e-08!23;UBERON:0005562!6.36e-08!23;UBERON:0007690!6.36e-08!23;UBERON:0006562!3.50e-07!24;UBERON:0001557!3.50e-07!24;UBERON:0001042!3.50e-07!24;UBERON:0008814!3.50e-07!24;UBERON:0009145!3.50e-07!24;UBERON:0003408!6.80e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.34e-17,48;UBERON:0002405,1.34e-17,48;UBERON:0002390,3.47e-17,45;UBERON:0003061,3.47e-17,45;UBERON:0004177,4.92e-11,29;UBERON:0005057,4.92e-11,29;UBERON:0002370,5.26e-09,23;UBERON:0000974,5.26e-09,23;UBERON:0004807,5.26e-09,23;UBERON:0005058,5.26e-09,23;UBERON:0003351,5.26e-09,23;UBERON:0009113,5.26e-09,23;UBERON:0003295,5.26e-09,23;UBERON:0009722,5.26e-09,23;UBERON:0005562,5.26e-09,23;UBERON:0007690,5.26e-09,23;UBERON:0002384,6.28e-09,46;UBERON:0000077,1.14e-08,35;UBERON:0006562,4.07e-08,24;UBERON:0003408,4.07e-08,24;UBERON:0001557,4.07e-08,24;UBERON:0001042,4.07e-08,24;UBERON:0008814,4.07e-08,24;UBERON:0009145,4.07e-08,24;UBERON:0002371,5.11e-07,16|phase1_expression=0.960893082628764,0,1.36499771816861,0.60492842261366,3.00537437967808,1.84667199103079,2.80335168714631,14.8491821957813,6.335492496825,6.55380673701582,16.950578854325,19.9430397488341,15.2368649638773,24.7399738845763,3.33109761815663,3.64455481301687,4.19737126876888,10.7257136221801,7.95263714913285,8.48779303596061,2.72138528483423,3.07801948722744,2.08959831311148,1.27993938234725,2.06468352960453,0,1.29228598847722,0.861884930743556,2.66032787238923,1.00812051903972,3.32595765982957,9.52546010189447,9.84103660135312,0,1.44425809875637,1.16364251750945,1.63335485009895,5.85944283031671,1.5626706890476,5.23523743973798,9.99993529652724,10.9287277593351,4.85510353031154,0.377690453926732,1.01376931219515,0.550640256485045,0.782391344348039,0.65407546914134,1.31811709640683,1.1665793944457,0.979904951377538,2.87505128729943,4.86569557567435,10.1550699881588,7.05796978199174,1.54355661621568,0.85960031981627,0.515672092277442,0.809265843438391,0,1.26766280701236,0.677689064138264,1.77858959222228,6.74924787961049,8.89979726310277,7.8152812644071,3.89480143673926,3.07374644257244,0.933206510776299,0.135005938331691,1.26194976810829,1.14260393761521,1.98781686856452,0.61245399607477,0.383381884072945,0.919218786610021,2.20231761998777,1.53224805702225,2.61131106535614,0.923204014111357,0.457438218012048,1.56274011167028,3.35019598801657,3.37657566019008,2.59757021220577,1.17851434189467,1.13897344639282,1.4911955666024,6.13382165998791,1.20914496170857,1.44932244350839,0.860423876981386,0.679971333707751,0.539703191637817,0,1.34408066129201,2.10666630197628,0.852151612890289,1.29893002301434,1.41335829804136,0.563373679106722,0,0,0,0.432982082022428,0.760079596425296,0,2.2836775943812,11.3932668804756,2.52351636410202,1.38788261412909,0.608930956624282,1.61430848079241,0.904335843315735,0.587943535678524,1.0053327306374,0.247194967734374,0.86759614151947,4.42305275974937,2.26473589926373,2.42925670306433,0.969750506270444,0,0.878342391034642,1.04723353406728,2.04365644166873,3.11519323715393,2.99951365496704,2.92261522268049,2.99581278809645,4.11750542536764,2.26177833803156,3.99795936442236,3.3243009452943,2.49345653471472,3.0825839982874,1.32391173005411,1.99051152976149,1.76905930903572,0.420883711772948,1.17108398666433,0.229902104433473,0.360124259610698,0.452114453507145,0.816437989815934,0.896796041993948,0.9370172455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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=2264 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000153303_5end | |||
|cluster_id=chr4:116793860..116793890,- | |||
|description=CAGE_peak_1_at_ENSMUST00000153303_5end | |||
|id=chr4:116793860..116793890,- | |||
|ontology_enrichment_celltype=CL:0000988!1.11e-11!32;CL:0002032!1.11e-11!32;CL:0000037!1.11e-11!32;CL:0000566!1.11e-11!32;CL:0000837!1.11e-11!32;CL:0002031!3.53e-10!25;CL:0002320!2.39e-08!46;CL:0000134!2.39e-08!46;CL:0000838!8.82e-08!12;CL:0000542!1.99e-07!13;CL:0000051!1.99e-07!13;CL:0000084!2.65e-07!11;CL:0000827!2.65e-07!11;CL:0000219!2.88e-07!54;CL:0000791!3.53e-07!9;CL:0000789!3.53e-07!9;CL:0002420!3.53e-07!9;CL:0002419!3.53e-07!9;CL:0000790!3.53e-07!9;CL:0000738!4.65e-07!17;CL:0002087!4.65e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.14e-12,32;CL:0002032,1.14e-12,32;CL:0000037,1.14e-12,32;CL:0000837,1.14e-12,32;CL:0002031,3.95e-11,25;CL:0002320,6.28e-09,46;CL:0000134,6.28e-09,46;CL:0000838,4.98e-08,12;CL:0000542,1.16e-07,13;CL:0000051,1.16e-07,13;CL:0000738,1.43e-07,17;CL:0002087,1.43e-07,17;CL:0000084,1.56e-07,11;CL:0000827,1.56e-07,11;CL:0000219,1.78e-07,54;CL:0000791,2.10e-07,9;CL:0000789,2.10e-07,9;CL:0002420,2.10e-07,9;CL:0002419,2.10e-07,9;CL:0000790,2.10e-07,9;CL:0000624,7.86e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.27e-16!48;UBERON:0002390!1.88e-15!45;UBERON:0003061!1.88e-15!45;UBERON:0004177!7.31e-10!29;UBERON:0002405!1.99e-09!70;UBERON:0002384!2.39e-08!46;UBERON:0002370!6.36e-08!23;UBERON:0000974!6.36e-08!23;UBERON:0004807!6.36e-08!23;UBERON:0005058!6.36e-08!23;UBERON:0003351!6.36e-08!23;UBERON:0009113!6.36e-08!23;UBERON:0003295!6.36e-08!23;UBERON:0009722!6.36e-08!23;UBERON:0005562!6.36e-08!23;UBERON:0007690!6.36e-08!23;UBERON:0006562!3.50e-07!24;UBERON:0001557!3.50e-07!24;UBERON:0001042!3.50e-07!24;UBERON:0008814!3.50e-07!24;UBERON:0009145!3.50e-07!24;UBERON:0003408!6.80e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.34e-17,48;UBERON:0002405,1.34e-17,48;UBERON:0002390,3.47e-17,45;UBERON:0003061,3.47e-17,45;UBERON:0004177,4.92e-11,29;UBERON:0005057,4.92e-11,29;UBERON:0002370,5.26e-09,23;UBERON:0000974,5.26e-09,23;UBERON:0004807,5.26e-09,23;UBERON:0005058,5.26e-09,23;UBERON:0003351,5.26e-09,23;UBERON:0009113,5.26e-09,23;UBERON:0003295,5.26e-09,23;UBERON:0009722,5.26e-09,23;UBERON:0005562,5.26e-09,23;UBERON:0007690,5.26e-09,23;UBERON:0002384,6.28e-09,46;UBERON:0000077,1.14e-08,35;UBERON:0006562,4.07e-08,24;UBERON:0003408,4.07e-08,24;UBERON:0001557,4.07e-08,24;UBERON:0001042,4.07e-08,24;UBERON:0008814,4.07e-08,24;UBERON:0009145,4.07e-08,24;UBERON:0002371,5.11e-07,16 | |||
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| |||
|short_description=p1@ENSMUST00000153303 | |||
}} |
Latest revision as of 15:01, 4 August 2015
Short description: | p1@ENSMUST00000153303 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000153303_5end |
Coexpression cluster: | MCL_coexpression_mm9:2264 |
Association with transcript: | 0bp_to_ENSMUST00000153303_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.14e-12 | 32 |
hematopoietic oligopotent progenitor cell | 1.14e-12 | 32 |
hematopoietic stem cell | 1.14e-12 | 32 |
hematopoietic multipotent progenitor cell | 1.14e-12 | 32 |
hematopoietic lineage restricted progenitor cell | 3.95e-11 | 25 |
connective tissue cell | 6.28e-09 | 46 |
mesenchymal cell | 6.28e-09 | 46 |
lymphoid lineage restricted progenitor cell | 4.98e-08 | 12 |
lymphocyte | 1.16e-07 | 13 |
common lymphoid progenitor | 1.16e-07 | 13 |
leukocyte | 1.43e-07 | 17 |
nongranular leukocyte | 1.43e-07 | 17 |
T cell | 1.56e-07 | 11 |
pro-T cell | 1.56e-07 | 11 |
motile cell | 1.78e-07 | 54 |
mature alpha-beta T cell | 2.10e-07 | 9 |
alpha-beta T cell | 2.10e-07 | 9 |
immature T cell | 2.10e-07 | 9 |
mature T cell | 2.10e-07 | 9 |
immature alpha-beta T cell | 2.10e-07 | 9 |
CD4-positive, alpha-beta T cell | 7.86e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.34e-17 | 48 |
immune system | 1.34e-17 | 48 |
hematopoietic system | 3.47e-17 | 45 |
blood island | 3.47e-17 | 45 |
hemopoietic organ | 4.92e-11 | 29 |
immune organ | 4.92e-11 | 29 |
thymus | 5.26e-09 | 23 |
neck | 5.26e-09 | 23 |
respiratory system epithelium | 5.26e-09 | 23 |
hemolymphoid system gland | 5.26e-09 | 23 |
pharyngeal epithelium | 5.26e-09 | 23 |
thymic region | 5.26e-09 | 23 |
pharyngeal gland | 5.26e-09 | 23 |
entire pharyngeal arch endoderm | 5.26e-09 | 23 |
thymus primordium | 5.26e-09 | 23 |
early pharyngeal endoderm | 5.26e-09 | 23 |
connective tissue | 6.28e-09 | 46 |
mixed endoderm/mesoderm-derived structure | 1.14e-08 | 35 |
pharynx | 4.07e-08 | 24 |
gland of gut | 4.07e-08 | 24 |
upper respiratory tract | 4.07e-08 | 24 |
chordate pharynx | 4.07e-08 | 24 |
pharyngeal arch system | 4.07e-08 | 24 |
pharyngeal region of foregut | 4.07e-08 | 24 |
bone marrow | 5.11e-07 | 16 |