FFCP PHASE1:Mm9::chr15:36937300..36937347,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1918 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc007vnd.1_5end | |association_with_transcript=0bp_to_uc007vnd.1_5end | ||
|cluster_id=chr15:36937300..36937347,+ | |||
|description=CAGE_peak_1_at_uc007vnd.1_5end | |description=CAGE_peak_1_at_uc007vnd.1_5end | ||
|id=chr15:36937300..36937347,+ | |id=chr15:36937300..36937347,+ | ||
|ontology_enrichment_celltype=CL:0000034!2.93e-16!97;CL:0000723!3.88e-15!91;CL:0000048!3.88e-15!91;CL:0000144!4.14e-15!121;CL:0000012!4.14e-15!121;CL:0002371!5.26e-14!118;CL:0000548!3.62e-13!115;CL:0000004!3.62e-13!115;CL:0000255!3.62e-13!115;CL:0000988!3.43e-09!32;CL:0002032!3.43e-09!32;CL:0000037!3.43e-09!32;CL:0000566!3.43e-09!32;CL:0000837!3.43e-09!32;CL:0000542!6.45e-08!13;CL:0000051!6.45e-08!13;CL:0000838!9.07e-08!12;CL:0002319!1.90e-07!43;CL:0000221!2.07e-07!44;CL:0000133!2.07e-07!44;CL:0000540!2.24e-07!33;CL:0000047!2.24e-07!33;CL:0000031!2.24e-07!33;CL:0000404!2.24e-07!33;CL:0000791!2.93e-07!9;CL:0000789!2.93e-07!9;CL:0002420!2.93e-07!9;CL:0002419!2.93e-07!9;CL:0000790!2.93e-07!9;CL:0000084!3.98e-07!11;CL:0000827!3.98e-07!11;CL:0000219!4.02e-07!54;CL:0000738!8.71e-07!17;CL:0002087!8.71e-07!17 | |ontology_enrichment_celltype=CL:0000034!2.93e-16!97;CL:0000723!3.88e-15!91;CL:0000048!3.88e-15!91;CL:0000144!4.14e-15!121;CL:0000012!4.14e-15!121;CL:0002371!5.26e-14!118;CL:0000548!3.62e-13!115;CL:0000004!3.62e-13!115;CL:0000255!3.62e-13!115;CL:0000988!3.43e-09!32;CL:0002032!3.43e-09!32;CL:0000037!3.43e-09!32;CL:0000566!3.43e-09!32;CL:0000837!3.43e-09!32;CL:0000542!6.45e-08!13;CL:0000051!6.45e-08!13;CL:0000838!9.07e-08!12;CL:0002319!1.90e-07!43;CL:0000221!2.07e-07!44;CL:0000133!2.07e-07!44;CL:0000540!2.24e-07!33;CL:0000047!2.24e-07!33;CL:0000031!2.24e-07!33;CL:0000404!2.24e-07!33;CL:0000791!2.93e-07!9;CL:0000789!2.93e-07!9;CL:0002420!2.93e-07!9;CL:0002419!2.93e-07!9;CL:0000790!2.93e-07!9;CL:0000084!3.98e-07!11;CL:0000827!3.98e-07!11;CL:0000219!4.02e-07!54;CL:0000738!8.71e-07!17;CL:0002087!8.71e-07!17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000034,3.28e-17,97;CL:0000723,4.84e-16,91;CL:0000048,4.84e-16,91;CL:0000988,1.21e-09,32;CL:0002032,1.21e-09,32;CL:0000037,1.21e-09,32;CL:0000837,1.21e-09,32;CL:0000542,3.74e-08,13;CL:0000051,3.74e-08,13;CL:0000838,5.33e-08,12;CL:0000219,1.37e-07,54;CL:0002319,1.43e-07,43;CL:0000221,1.56e-07,44;CL:0000133,1.56e-07,44;CL:0000791,1.80e-07,9;CL:0000789,1.80e-07,9;CL:0002420,1.80e-07,9;CL:0002419,1.80e-07,9;CL:0000790,1.80e-07,9;CL:0000540,2.00e-07,33;CL:0000047,2.00e-07,33;CL:0000031,2.00e-07,33;CL:0000404,2.00e-07,33;CL:0000084,2.47e-07,11;CL:0000827,2.47e-07,11;CL:0002320,4.55e-07,46;CL:0000134,4.55e-07,46;CL:0000738,5.56e-07,17;CL:0002087,5.56e-07,17;CL:0002031,5.64e-07,25;CL:0000624,6.91e-07,8;CL:0002321,7.53e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.08e-10!73;UBERON:0005743!2.08e-10!73;UBERON:0000073!2.20e-09!75;UBERON:0001016!2.20e-09!75;UBERON:0000153!8.85e-09!94;UBERON:0007811!1.99e-08!86;UBERON:0004121!5.50e-08!102;UBERON:0000924!5.50e-08!102;UBERON:0006601!5.50e-08!102;UBERON:0000033!1.08e-07!63;UBERON:0002346!4.99e-07!71;UBERON:0003075!4.99e-07!71;UBERON:0007284!4.99e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.17e-10,73;UBERON:0004121,1.68e-09,95;UBERON:0000924,1.68e-09,95;UBERON:0006601,1.68e-09,95;UBERON:0001016,2.12e-09,75;UBERON:0002346,7.82e-09,64;UBERON:0003075,7.82e-09,64;UBERON:0007284,7.82e-09,64;UBERON:0010371,8.56e-08,73;UBERON:0002384,4.55e-07,46;UBERON:0003056,8.95e-07,49 | |||
|phase1_expression=3.84357233051505,0.697950815278722,1.36499771816861,1.81478526784098,1.50268718983904,2.51818907867835,0.934450562382103,12.3958390503913,12.67098499365,10.5329036844897,14.0398733944914,13.4814948702119,9.75844160607873,12.7633787531736,0.333109761815663,1.21485160433896,1.39912375625629,2.20823515750766,1.23402990245165,1.69755860719212,1.02051948181284,2.28369187762036,1.82839852397255,0.47997726838022,1.60586496747019,0.57423196411502,0.86152399231815,1.29282739611533,0.570070258369122,1.26015064879965,2.66076612786366,25.4012269383852,16.6067492647834,31.6963362030877,10.1098066912946,6.15068187826422,7.35009682544529,2.09265815368454,5.4693474116666,2.09409497589519,5.29408339227913,4.09827290975067,1.45653105909346,2.39203954153597,3.04130793658544,4.03802854755699,5.47673941043627,4.57852828398938,1.09843091367236,2.72201858703997,2.2397827460058,4.31257693094915,11.0736519998106,8.70434570413613,5.37750078627942,0,0.85960031981627,0,3.43937983461316,3.70293685490423,1.90149421051854,1.0165335962074,0,2.6996991518442,0.988866362566974,1.4209602298922,1.79760066311043,1.15265491596466,2.17748185847803,2.29510095163874,3.15487442027073,2.57085885963423,2.65042249141936,2.44981598429908,2.20444583341944,9.19218786610021,1.10115880999389,2.42605942361857,1.84327839907492,1.58263545276233,2.01272815925301,0.52091337055676,2.51264699101243,3.37657566019008,1.5279824777681,1.47314292736834,0.996601765593721,1.67759501242771,0.832988126665025,0.226714680320357,9.85539261585705,0.860423876981386,2.03991400112325,0,0,0.896053774194671,0.561777680527007,1.87473354835864,4.1565760736459,2.82671659608272,1.54927761754349,0,5.09610479413291,0,1.5154372870785,2.78695852022608,2.52762222507392,0.34255163915718,1.03575153458869,0.29688427812965,1.21439728736295,2.74018930480927,0.691846491768175,1.20578112442098,0.705532242814229,0.879666139307728,0.247194967734374,1.01219549843938,0,1.13236794963186,0.883366073841574,1.45462575940567,0,2.92780797011547,2.09446706813455,0.510914110417183,2.99537811264801,7.19883277192089,3.68503658511888,0.748953197024114,4.57500602818627,1.25654352112864,2.43354048269187,2.04572365864264,0.83115217823824,2.27137768294861,0.611036183101898,1.24406970610093,3.28539585963777,1.47309299120532,2.86264974517948,3.21862946206862,1.80062129805349,3.91832526372859,2.31324097114515,2.94661556655154,2.24884138943349,2.32833033665114,2.80238390812695,1.70195472151037,2.11141348996739,1.97276159184817,0.556094498451196,2.089512999133,2.67516777330327,1.19420560091096,2.80885274925294,2.83082697826187,3.12579849335152,0.414251545071004,0.938104239924385,2.34080679899319,0.710234206755631,0.590292695242212,1.3884040159864,1.62773761325285,0.804820204198858,0.700592054203017,2.63295759861569,0.492502392237286,0.56748166682099,0.877199924551994,0.658650345873152,0.402619256281115,2.10289948564127,1.44066457330998,0.330418782983798,0.264450566663544,2.34617075588757,1.16118335930219,0.902072229254653,0.201683524623343,0.889512175379481,0.570676878337677,1.42358718463353,0.988193728344065,1.00534083520108,0,0.974820435595601,1.79763881730844,0.648414149624083,0.597423819763102,2.0863469104839,1.37098215131675,2.25415471346161,1.4255592949172,1.55161989734101,1.05203729835478,1.01178459398812,0.590440591918409,1.255989822731,0.987177311374404,0,0.667380422864376,1.37591296579242,0.899448449539415,1.01430060694251,0.964708639009667,0.25462585178142,0.863088412352432,1.13494658742525,0.549122826376163,1.43768206527355,0.372140947668503,0,1.01031551178845,0.538192240565737,0,0.369506380333209,3.60033682363921,0.977789858652155,1.52770577197669,1.40814148973101,1.17254380209271,0,0.390267295715598,0.788175720530955,0.664394068946325,0.956728611944923,0.983179888294428,0.690739927463582,0.723245292907558,1.50791283939272,1.63171705145613,0.491764273019036,1.65562047782839,1.60550589987792,1.64096361229084,0.491804836130026,1.00988370881749,3.47059041357882,3.51394869866975,4.30846795465598,3.34556317133573,3.11918143715352,4.81230102341015,4.04810701674894,2.33804686329049,3.95287777946523,0.963963949265421,0.709700426041343,1.6025904330053,1.30309567482861,0.824850614862677,1.32745138339963,2.18502572539483,2.41858845571801,1.50884063804718,2.06711325016541,1.53717573971964,0.775284879504663,1.81766864738753,0.712994756769443,0.948110273807448,2.10837217149998,2.06271086496374,3.06395645178409,2.34079422240703,2.19909762430683,3.42939256050548,1.95074257006501,2.67553226403106,2.96188237083818,3.95804433848979,0.938686832254841,2.54198485036584,1.10264199027481,1.15420377059036,2.26050197374268,1.32688434841943,0.835606408021955,0.820704498725306,0.582961673259701,0.741701208042039,1.19609616558497,0.206386867963223,0.370389054739423,0.565105371014073,0.546776910884101,1.14389086603261,2.20971958992012,3.21888340344413,4.00779924032829,0,1.73984796469624,0.609958401380546,0.972048067396211,1.67270636811575,1.09181281873089,2.02296519577231,0.826534557253359,1.04702376793612,0.6480748664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| |phase1_expression=3.84357233051505,0.697950815278722,1.36499771816861,1.81478526784098,1.50268718983904,2.51818907867835,0.934450562382103,12.3958390503913,12.67098499365,10.5329036844897,14.0398733944914,13.4814948702119,9.75844160607873,12.7633787531736,0.333109761815663,1.21485160433896,1.39912375625629,2.20823515750766,1.23402990245165,1.69755860719212,1.02051948181284,2.28369187762036,1.82839852397255,0.47997726838022,1.60586496747019,0.57423196411502,0.86152399231815,1.29282739611533,0.570070258369122,1.26015064879965,2.66076612786366,25.4012269383852,16.6067492647834,31.6963362030877,10.1098066912946,6.15068187826422,7.35009682544529,2.09265815368454,5.4693474116666,2.09409497589519,5.29408339227913,4.09827290975067,1.45653105909346,2.39203954153597,3.04130793658544,4.03802854755699,5.47673941043627,4.57852828398938,1.09843091367236,2.72201858703997,2.2397827460058,4.31257693094915,11.0736519998106,8.70434570413613,5.37750078627942,0,0.85960031981627,0,3.43937983461316,3.70293685490423,1.90149421051854,1.0165335962074,0,2.6996991518442,0.988866362566974,1.4209602298922,1.79760066311043,1.15265491596466,2.17748185847803,2.29510095163874,3.15487442027073,2.57085885963423,2.65042249141936,2.44981598429908,2.20444583341944,9.19218786610021,1.10115880999389,2.42605942361857,1.84327839907492,1.58263545276233,2.01272815925301,0.52091337055676,2.51264699101243,3.37657566019008,1.5279824777681,1.47314292736834,0.996601765593721,1.67759501242771,0.832988126665025,0.226714680320357,9.85539261585705,0.860423876981386,2.03991400112325,0,0,0.896053774194671,0.561777680527007,1.87473354835864,4.1565760736459,2.82671659608272,1.54927761754349,0,5.09610479413291,0,1.5154372870785,2.78695852022608,2.52762222507392,0.34255163915718,1.03575153458869,0.29688427812965,1.21439728736295,2.74018930480927,0.691846491768175,1.20578112442098,0.705532242814229,0.879666139307728,0.247194967734374,1.01219549843938,0,1.13236794963186,0.883366073841574,1.45462575940567,0,2.92780797011547,2.09446706813455,0.510914110417183,2.99537811264801,7.19883277192089,3.68503658511888,0.748953197024114,4.57500602818627,1.25654352112864,2.43354048269187,2.04572365864264,0.83115217823824,2.27137768294861,0.611036183101898,1.24406970610093,3.28539585963777,1.47309299120532,2.86264974517948,3.21862946206862,1.80062129805349,3.91832526372859,2.31324097114515,2.94661556655154,2.24884138943349,2.32833033665114,2.80238390812695,1.70195472151037,2.11141348996739,1.97276159184817,0.556094498451196,2.089512999133,2.67516777330327,1.19420560091096,2.80885274925294,2.83082697826187,3.12579849335152,0.414251545071004,0.938104239924385,2.34080679899319,0.710234206755631,0.590292695242212,1.3884040159864,1.62773761325285,0.804820204198858,0.700592054203017,2.63295759861569,0.492502392237286,0.56748166682099,0.877199924551994,0.658650345873152,0.402619256281115,2.10289948564127,1.44066457330998,0.330418782983798,0.264450566663544,2.34617075588757,1.16118335930219,0.902072229254653,0.201683524623343,0.889512175379481,0.570676878337677,1.42358718463353,0.988193728344065,1.00534083520108,0,0.974820435595601,1.79763881730844,0.648414149624083,0.597423819763102,2.0863469104839,1.37098215131675,2.25415471346161,1.4255592949172,1.55161989734101,1.05203729835478,1.01178459398812,0.590440591918409,1.255989822731,0.987177311374404,0,0.667380422864376,1.37591296579242,0.899448449539415,1.01430060694251,0.964708639009667,0.25462585178142,0.863088412352432,1.13494658742525,0.549122826376163,1.43768206527355,0.372140947668503,0,1.01031551178845,0.538192240565737,0,0.369506380333209,3.60033682363921,0.977789858652155,1.52770577197669,1.40814148973101,1.17254380209271,0,0.390267295715598,0.788175720530955,0.664394068946325,0.956728611944923,0.983179888294428,0.690739927463582,0.723245292907558,1.50791283939272,1.63171705145613,0.491764273019036,1.65562047782839,1.60550589987792,1.64096361229084,0.491804836130026,1.00988370881749,3.47059041357882,3.51394869866975,4.30846795465598,3.34556317133573,3.11918143715352,4.81230102341015,4.04810701674894,2.33804686329049,3.95287777946523,0.963963949265421,0.709700426041343,1.6025904330053,1.30309567482861,0.824850614862677,1.32745138339963,2.18502572539483,2.41858845571801,1.50884063804718,2.06711325016541,1.53717573971964,0.775284879504663,1.81766864738753,0.712994756769443,0.948110273807448,2.10837217149998,2.06271086496374,3.06395645178409,2.34079422240703,2.19909762430683,3.42939256050548,1.95074257006501,2.67553226403106,2.96188237083818,3.95804433848979,0.938686832254841,2.54198485036584,1.10264199027481,1.15420377059036,2.26050197374268,1.32688434841943,0.835606408021955,0.820704498725306,0.582961673259701,0.741701208042039,1.19609616558497,0.206386867963223,0.370389054739423,0.565105371014073,0.546776910884101,1.14389086603261,2.20971958992012,3.21888340344413,4.00779924032829,0,1.73984796469624,0.609958401380546,0.972048067396211,1.67270636811575,1.09181281873089,2.02296519577231,0.826534557253359,1.04702376793612,0.6480748664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| ||
|short_description=p1@uc007vnd.1 | |short_description=p1@uc007vnd.1 | ||
}} | }} |
Latest revision as of 05:28, 5 August 2015
Short description: | p1@uc007vnd.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc007vnd.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1918 |
Association with transcript: | 0bp_to_uc007vnd.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 3.28e-17 | 97 |
somatic stem cell | 4.84e-16 | 91 |
multi fate stem cell | 4.84e-16 | 91 |
hematopoietic cell | 1.21e-09 | 32 |
hematopoietic oligopotent progenitor cell | 1.21e-09 | 32 |
hematopoietic stem cell | 1.21e-09 | 32 |
hematopoietic multipotent progenitor cell | 1.21e-09 | 32 |
lymphocyte | 3.74e-08 | 13 |
common lymphoid progenitor | 3.74e-08 | 13 |
lymphoid lineage restricted progenitor cell | 5.33e-08 | 12 |
motile cell | 1.37e-07 | 54 |
neural cell | 1.43e-07 | 43 |
ectodermal cell | 1.56e-07 | 44 |
neurectodermal cell | 1.56e-07 | 44 |
mature alpha-beta T cell | 1.80e-07 | 9 |
alpha-beta T cell | 1.80e-07 | 9 |
immature T cell | 1.80e-07 | 9 |
mature T cell | 1.80e-07 | 9 |
immature alpha-beta T cell | 1.80e-07 | 9 |
neuron | 2.00e-07 | 33 |
neuronal stem cell | 2.00e-07 | 33 |
neuroblast | 2.00e-07 | 33 |
electrically signaling cell | 2.00e-07 | 33 |
T cell | 2.47e-07 | 11 |
pro-T cell | 2.47e-07 | 11 |
connective tissue cell | 4.55e-07 | 46 |
mesenchymal cell | 4.55e-07 | 46 |
leukocyte | 5.56e-07 | 17 |
nongranular leukocyte | 5.56e-07 | 17 |
hematopoietic lineage restricted progenitor cell | 5.64e-07 | 25 |
CD4-positive, alpha-beta T cell | 6.91e-07 | 8 |
embryonic cell | 7.53e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.17e-10 | 73 |
ectoderm-derived structure | 1.68e-09 | 95 |
ectoderm | 1.68e-09 | 95 |
presumptive ectoderm | 1.68e-09 | 95 |
nervous system | 2.12e-09 | 75 |
neurectoderm | 7.82e-09 | 64 |
neural plate | 7.82e-09 | 64 |
presumptive neural plate | 7.82e-09 | 64 |
ecto-epithelium | 8.56e-08 | 73 |
connective tissue | 4.55e-07 | 46 |
pre-chordal neural plate | 8.95e-07 | 49 |