FFCP PHASE1:Mm9::chr7:57165722..57165728,+: Difference between revisions
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{{FFCP|EntrezGene=104245|HGNC=|MCL_coexpression_id=218|UniProt=B2RQX9,B2RXV9|association_with_transcript=53bp_to_NM_001146013,uc009hbv.2,uc012fle.1_5end|description=CAGE_peak_9_at_Slc6a5_5end|id=chr7:57165722..57165728,+|ontology_enrichment_celltype=CL:0002612!8.33e-20!3;CL:0002611!8.16e-14!2;CL:0000117!1.03e-09!23;CL:0000337!1.03e-09!23|ontology_enrichment_celltype_v019_2=CL:0002611,7.56e-10,2;CL:0002612,4.77e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003076!1.33e-42!12;UBERON:0003057!1.33e-42!12;UBERON:0002240!2.65e-38!6;UBERON:0005174!2.65e-38!6;UBERON:0001137!2.65e-38!6;UBERON:0001948!6.03e-32!5;UBERON:0002315!6.03e-32!5;UBERON:0002257!8.33e-20!3;UBERON:0001896!2.49e-14!2;UBERON:0005290!2.49e-14!2;UBERON:0010096!2.49e-14!2;UBERON:0002256!8.16e-14!2;UBERON:0001049!2.48e-11!52;UBERON:0005068!2.48e-11!52;UBERON:0006241!2.48e-11!52;UBERON:0007135!2.48e-11!52;UBERON:0000489!8.95e-11!21;UBERON:0002298!2.00e-10!6;UBERON:0004733!2.32e-10!6;UBERON:0004732!2.32e-10!6;UBERON:0002028!2.32e-10!6;UBERON:0007277!2.32e-10!6;UBERON:0002346!9.87e-10!71;UBERON:0003075!9.87e-10!71;UBERON:0007284!9.87e-10!71;UBERON:0001017!9.85e-08!73;UBERON:0005743!9.85e-08!73;UBERON:0000073!1.71e-07!75;UBERON:0001016!1.71e-07!75|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.18e-36,12;UBERON:0003057,1.18e-36,12;UBERON:0001896,6.35e-36,2;UBERON:0002298,6.35e-36,2;UBERON:0005290,6.35e-36,2;UBERON:0010096,6.35e-36,2;UBERON:0002240,1.27e-26,6;UBERON:0005174,1.27e-26,6;UBERON:0001137,1.27e-26,6;UBERON:0001948,9.80e-15,5;UBERON:0002315,9.80e-15,5;UBERON:0004733,9.45e-13,6;UBERON:0004732,9.45e-13,6;UBERON:0002028,9.45e-13,6;UBERON:0007277,9.45e-13,6;UBERON:0002256,7.56e-10,2;UBERON:0001049,5.37e-09,52;UBERON:0005068,5.37e-09,52;UBERON:0006241,5.37e-09,52;UBERON:0007135,5.37e-09,52;UBERON:0000489,3.24e-08,21;UBERON:0002346,2.08e-07,64;UBERON:0003075,2.08e-07,64;UBERON:0007284,2.08e-07,64;UBERON:0002257,4.77e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42825492201902,0.662605622854841,0,0,0,0,0,0,0,0,0,0.558365998002762,0,0,1.47314292736834,0.711858403995515,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.77982123956051,2.81308047821288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8939313422207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0|short_description=p9@Slc6a5}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:104245 | |||
|HGNC= | |||
|MCL_coexpression_id=218 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B2RQX9,uniprot:B2RXV9 | |||
|association_with_transcript=53bp_to_NM_001146013,uc009hbv.2,uc012fle.1_5end | |||
|cluster_id=chr7:57165722..57165728,+ | |||
|description=CAGE_peak_9_at_Slc6a5_5end | |||
|id=chr7:57165722..57165728,+ | |||
|ontology_enrichment_celltype=CL:0002612!8.33e-20!3;CL:0002611!8.16e-14!2;CL:0000117!1.03e-09!23;CL:0000337!1.03e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002611,7.56e-10,2;CL:0002612,4.77e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!1.33e-42!12;UBERON:0003057!1.33e-42!12;UBERON:0002240!2.65e-38!6;UBERON:0005174!2.65e-38!6;UBERON:0001137!2.65e-38!6;UBERON:0001948!6.03e-32!5;UBERON:0002315!6.03e-32!5;UBERON:0002257!8.33e-20!3;UBERON:0001896!2.49e-14!2;UBERON:0005290!2.49e-14!2;UBERON:0010096!2.49e-14!2;UBERON:0002256!8.16e-14!2;UBERON:0001049!2.48e-11!52;UBERON:0005068!2.48e-11!52;UBERON:0006241!2.48e-11!52;UBERON:0007135!2.48e-11!52;UBERON:0000489!8.95e-11!21;UBERON:0002298!2.00e-10!6;UBERON:0004733!2.32e-10!6;UBERON:0004732!2.32e-10!6;UBERON:0002028!2.32e-10!6;UBERON:0007277!2.32e-10!6;UBERON:0002346!9.87e-10!71;UBERON:0003075!9.87e-10!71;UBERON:0007284!9.87e-10!71;UBERON:0001017!9.85e-08!73;UBERON:0005743!9.85e-08!73;UBERON:0000073!1.71e-07!75;UBERON:0001016!1.71e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.18e-36,12;UBERON:0003057,1.18e-36,12;UBERON:0001896,6.35e-36,2;UBERON:0002298,6.35e-36,2;UBERON:0005290,6.35e-36,2;UBERON:0010096,6.35e-36,2;UBERON:0002240,1.27e-26,6;UBERON:0005174,1.27e-26,6;UBERON:0001137,1.27e-26,6;UBERON:0001948,9.80e-15,5;UBERON:0002315,9.80e-15,5;UBERON:0004733,9.45e-13,6;UBERON:0004732,9.45e-13,6;UBERON:0002028,9.45e-13,6;UBERON:0007277,9.45e-13,6;UBERON:0002256,7.56e-10,2;UBERON:0001049,5.37e-09,52;UBERON:0005068,5.37e-09,52;UBERON:0006241,5.37e-09,52;UBERON:0007135,5.37e-09,52;UBERON:0000489,3.24e-08,21;UBERON:0002346,2.08e-07,64;UBERON:0003075,2.08e-07,64;UBERON:0007284,2.08e-07,64;UBERON:0002257,4.77e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42825492201902,0.662605622854841,0,0,0,0,0,0,0,0,0,0.558365998002762,0,0,1.47314292736834,0.711858403995515,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.77982123956051,2.81308047821288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8939313422207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@Slc6a5 | |||
}} |
Revision as of 10:40, 5 August 2015
Short description: | p9@Slc6a5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Slc6a5_5end |
Coexpression cluster: | MCL_coexpression_mm9:218 |
Association with transcript: | 53bp_to_NM_001146013, uc009hbv.2, uc012fle.1_5end |
EntrezGene: | 104245 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the dorsal spinal cord | 7.56e-10 | 2 |
neuron of the ventral spinal cord | 4.77e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 1.18e-36 | 12 |
chordal neural plate | 1.18e-36 | 12 |
medulla oblongata | 6.35e-36 | 2 |
brainstem | 6.35e-36 | 2 |
myelencephalon | 6.35e-36 | 2 |
future myelencephalon | 6.35e-36 | 2 |
spinal cord | 1.27e-26 | 6 |
dorsal region element | 1.27e-26 | 6 |
dorsum | 1.27e-26 | 6 |
regional part of spinal cord | 9.80e-15 | 5 |
gray matter of spinal cord | 9.80e-15 | 5 |
segmental subdivision of hindbrain | 9.45e-13 | 6 |
segmental subdivision of nervous system | 9.45e-13 | 6 |
hindbrain | 9.45e-13 | 6 |
presumptive hindbrain | 9.45e-13 | 6 |
dorsal horn of spinal cord | 7.56e-10 | 2 |
neural tube | 5.37e-09 | 52 |
neural rod | 5.37e-09 | 52 |
future spinal cord | 5.37e-09 | 52 |
neural keel | 5.37e-09 | 52 |
cavitated compound organ | 3.24e-08 | 21 |
neurectoderm | 2.08e-07 | 64 |
neural plate | 2.08e-07 | 64 |
presumptive neural plate | 2.08e-07 | 64 |
ventral horn of spinal cord | 4.77e-07 | 3 |