FFCP PHASE1:Mm9::chr4:48598099..48598117,+: Difference between revisions
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{{FFCP|EntrezGene=230157|HGNC=|MCL_coexpression_id=335|UniProt=Q6PFE7|association_with_transcript=34bp_to_ENSMUST00000107703,NM_021436,uc008svk.1,uc008svl.1_5end|description=CAGE_peak_6_at_Tmeff1_5end|id=chr4:48598099..48598117,+|ontology_enrichment_celltype=CL:0000540!1.90e-14!33;CL:0000047!1.90e-14!33;CL:0000031!1.90e-14!33;CL:0000404!1.90e-14!33;CL:0000393!5.65e-13!39;CL:0000211!5.65e-13!39;CL:0000117!8.28e-13!23;CL:0000337!8.28e-13!23;CL:0002319!4.31e-11!43;CL:0000221!6.13e-11!44;CL:0000133!6.13e-11!44;CL:0000055!1.00e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.03e-20,23;CL:0000337,3.03e-20,23;CL:0000540,6.44e-18,33;CL:0000047,6.44e-18,33;CL:0000031,6.44e-18,33;CL:0000404,6.44e-18,33;CL:0000393,4.81e-15,39;CL:0000211,4.81e-15,39;CL:0002319,3.91e-13,43;CL:0000221,1.18e-12,44;CL:0000133,1.18e-12,44;CL:0002609,8.59e-09,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.60e-18!73;UBERON:0005743!5.60e-18!73;UBERON:0000073!1.83e-17!75;UBERON:0001016!1.83e-17!75;UBERON:0004121!1.89e-17!102;UBERON:0000924!1.89e-17!102;UBERON:0006601!1.89e-17!102;UBERON:0002346!3.46e-15!71;UBERON:0003075!3.46e-15!71;UBERON:0007284!3.46e-15!71;UBERON:0003056!6.46e-14!49;UBERON:0000033!1.93e-13!63;UBERON:0002020!3.35e-12!34;UBERON:0001049!4.80e-12!52;UBERON:0005068!4.80e-12!52;UBERON:0006241!4.80e-12!52;UBERON:0007135!4.80e-12!52;UBERON:0003080!8.80e-11!40;UBERON:0000955!1.38e-10!50;UBERON:0006238!1.38e-10!50;UBERON:0002780!1.57e-10!39;UBERON:0001890!1.57e-10!39;UBERON:0006240!1.57e-10!39;UBERON:0002616!1.91e-10!49;UBERON:0002791!1.32e-09!29;UBERON:0003528!1.32e-09!29;UBERON:0001893!1.32e-09!29;UBERON:0000956!9.90e-07!21;UBERON:0001869!9.90e-07!21;UBERON:0000203!9.90e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.66e-18,49;UBERON:0002346,1.30e-17,64;UBERON:0003075,1.30e-17,64;UBERON:0007284,1.30e-17,64;UBERON:0001017,1.33e-17,73;UBERON:0004121,2.77e-17,95;UBERON:0000924,2.77e-17,95;UBERON:0006601,2.77e-17,95;UBERON:0001016,8.37e-17,75;UBERON:0002020,1.04e-16,34;UBERON:0000073,8.22e-16,54;UBERON:0010371,5.80e-15,73;UBERON:0001049,1.50e-14,52;UBERON:0005068,1.50e-14,52;UBERON:0006241,1.50e-14,52;UBERON:0007135,1.50e-14,52;UBERON:0002780,3.12e-14,39;UBERON:0001890,3.12e-14,39;UBERON:0006240,3.12e-14,39;UBERON:0003080,1.11e-13,40;UBERON:0003528,2.58e-13,29;UBERON:0002791,2.58e-13,29;UBERON:0001893,2.58e-13,29;UBERON:0010314,1.72e-12,92;UBERON:0002616,6.26e-12,46;UBERON:0000955,1.65e-11,47;UBERON:0006238,1.65e-11,47;UBERON:0000956,9.21e-09,21;UBERON:0001869,9.21e-09,21;UBERON:0000203,9.21e-09,21|phase1_expression=1.12104192973356,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.367093504323363,0,0,0,0.194429899074283,0.279972843250725,1.43752564364972,0,0,0,0.514518872071894,0,1.03134418455488,4.85559506063035,6.34789175126439,5.70448263155561,0,0,0,0,0,0.299600110518405,0.768436610643109,4.45865332926454,4.3201900266141,3.99617426567626,2.28520787523043,0.883474163806454,4.89963196859816,4.2172007248024,5.51531271966013,1.10115880999389,1.14918604276669,0.768032666281217,8.17694983927202,8.87430142943374,7.8137005583514,1.3959149950069,0,1.68078072554491,2.06240009831567,2.70506193518296,5.59198337475902,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0.519572009205738,0,0.281686839553361,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0.11418387971906,0,0,1.04091196059682,0.608930956624282,0.691846491768175,0.60289056221049,0.470354828542819,0.125666591329675,0.494389935468748,0,0,0.323533699894818,0.220841518460394,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.898743836428936,0.915001205637253,2.63874139437015,0.521472960576829,0.767146371990992,1.0389402227978,2.27137768294861,0.305518091550949,0,0,0.210441855886474,2.34216797332867,2.29902104433473,1.62055916824814,1.20563854268572,1.42876648217788,1.15302348256365,1.12442069471675,0.517406741478031,1.29340795759705,1.51284864134255,1.05570674498369,0.43839146485515,0.278047249225598,0,0.205782136407943,1.39323986772945,0,0,0,1.24275463521301,1.17263029990548,0.720248245844059,0.23674473558521,0.196764231747404,0.154267112887378,0.232533944750408,0.268273401399619,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,1.05144974282064,4.42489833230923,0,0,1.70630600428187,1.39342003116263,0.38660238396628,0.605050573870028,0.444756087689741,0.190225626112559,0,0.494096864172033,0.251335208800269,0.198956472041151,0,0,0,0,0.569003702859245,0.456994050438915,0,0.610953983535943,0.387904974335251,0.561086559122548,0.252946148497029,0,0,0,0,0.166845105716094,0,0.224862112384854,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,1.13694847062291,0.162964976442026,0.339490171550376,0.704070744865506,0.502518772325447,0.476087281772027,0.975668239288994,0.472905432318573,0.664394068946325,0.63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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:230157 | |||
|HGNC= | |||
|MCL_coexpression_id=335 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6PFE7 | |||
|association_with_transcript=34bp_to_ENSMUST00000107703,NM_021436,uc008svk.1,uc008svl.1_5end | |||
|cluster_id=chr4:48598099..48598117,+ | |||
|description=CAGE_peak_6_at_Tmeff1_5end | |||
|id=chr4:48598099..48598117,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.90e-14!33;CL:0000047!1.90e-14!33;CL:0000031!1.90e-14!33;CL:0000404!1.90e-14!33;CL:0000393!5.65e-13!39;CL:0000211!5.65e-13!39;CL:0000117!8.28e-13!23;CL:0000337!8.28e-13!23;CL:0002319!4.31e-11!43;CL:0000221!6.13e-11!44;CL:0000133!6.13e-11!44;CL:0000055!1.00e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.03e-20,23;CL:0000337,3.03e-20,23;CL:0000540,6.44e-18,33;CL:0000047,6.44e-18,33;CL:0000031,6.44e-18,33;CL:0000404,6.44e-18,33;CL:0000393,4.81e-15,39;CL:0000211,4.81e-15,39;CL:0002319,3.91e-13,43;CL:0000221,1.18e-12,44;CL:0000133,1.18e-12,44;CL:0002609,8.59e-09,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.60e-18!73;UBERON:0005743!5.60e-18!73;UBERON:0000073!1.83e-17!75;UBERON:0001016!1.83e-17!75;UBERON:0004121!1.89e-17!102;UBERON:0000924!1.89e-17!102;UBERON:0006601!1.89e-17!102;UBERON:0002346!3.46e-15!71;UBERON:0003075!3.46e-15!71;UBERON:0007284!3.46e-15!71;UBERON:0003056!6.46e-14!49;UBERON:0000033!1.93e-13!63;UBERON:0002020!3.35e-12!34;UBERON:0001049!4.80e-12!52;UBERON:0005068!4.80e-12!52;UBERON:0006241!4.80e-12!52;UBERON:0007135!4.80e-12!52;UBERON:0003080!8.80e-11!40;UBERON:0000955!1.38e-10!50;UBERON:0006238!1.38e-10!50;UBERON:0002780!1.57e-10!39;UBERON:0001890!1.57e-10!39;UBERON:0006240!1.57e-10!39;UBERON:0002616!1.91e-10!49;UBERON:0002791!1.32e-09!29;UBERON:0003528!1.32e-09!29;UBERON:0001893!1.32e-09!29;UBERON:0000956!9.90e-07!21;UBERON:0001869!9.90e-07!21;UBERON:0000203!9.90e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.66e-18,49;UBERON:0002346,1.30e-17,64;UBERON:0003075,1.30e-17,64;UBERON:0007284,1.30e-17,64;UBERON:0001017,1.33e-17,73;UBERON:0004121,2.77e-17,95;UBERON:0000924,2.77e-17,95;UBERON:0006601,2.77e-17,95;UBERON:0001016,8.37e-17,75;UBERON:0002020,1.04e-16,34;UBERON:0000073,8.22e-16,54;UBERON:0010371,5.80e-15,73;UBERON:0001049,1.50e-14,52;UBERON:0005068,1.50e-14,52;UBERON:0006241,1.50e-14,52;UBERON:0007135,1.50e-14,52;UBERON:0002780,3.12e-14,39;UBERON:0001890,3.12e-14,39;UBERON:0006240,3.12e-14,39;UBERON:0003080,1.11e-13,40;UBERON:0003528,2.58e-13,29;UBERON:0002791,2.58e-13,29;UBERON:0001893,2.58e-13,29;UBERON:0010314,1.72e-12,92;UBERON:0002616,6.26e-12,46;UBERON:0000955,1.65e-11,47;UBERON:0006238,1.65e-11,47;UBERON:0000956,9.21e-09,21;UBERON:0001869,9.21e-09,21;UBERON:0000203,9.21e-09,21 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.367093504323363,0,0,0,0.194429899074283,0.279972843250725,1.43752564364972,0,0,0,0.514518872071894,0,1.03134418455488,4.85559506063035,6.34789175126439,5.70448263155561,0,0,0,0,0,0.299600110518405,0.768436610643109,4.45865332926454,4.3201900266141,3.99617426567626,2.28520787523043,0.883474163806454,4.89963196859816,4.2172007248024,5.51531271966013,1.10115880999389,1.14918604276669,0.768032666281217,8.17694983927202,8.87430142943374,7.8137005583514,1.3959149950069,0,1.68078072554491,2.06240009831567,2.70506193518296,5.59198337475902,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0.519572009205738,0,0.281686839553361,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0.11418387971906,0,0,1.04091196059682,0.608930956624282,0.691846491768175,0.60289056221049,0.470354828542819,0.125666591329675,0.494389935468748,0,0,0.323533699894818,0.220841518460394,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.898743836428936,0.915001205637253,2.63874139437015,0.521472960576829,0.767146371990992,1.0389402227978,2.27137768294861,0.305518091550949,0,0,0.210441855886474,2.34216797332867,2.29902104433473,1.62055916824814,1.20563854268572,1.42876648217788,1.15302348256365,1.12442069471675,0.517406741478031,1.29340795759705,1.51284864134255,1.05570674498369,0.43839146485515,0.278047249225598,0,0.205782136407943,1.39323986772945,0,0,0,1.24275463521301,1.17263029990548,0.720248245844059,0.23674473558521,0.196764231747404,0.154267112887378,0.232533944750408,0.268273401399619,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,1.05144974282064,4.42489833230923,0,0,1.70630600428187,1.39342003116263,0.38660238396628,0.605050573870028,0.444756087689741,0.190225626112559,0,0.494096864172033,0.251335208800269,0.198956472041151,0,0,0,0,0.569003702859245,0.456994050438915,0,0.610953983535943,0.387904974335251,0.561086559122548,0.252946148497029,0,0,0,0,0.166845105716094,0,0.224862112384854,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,1.13694847062291,0.162964976442026,0.339490171550376,0.704070744865506,0.502518772325447,0.476087281772027,0.975668239288994,0.472905432318573,0.664394068946325,0.637819074629948,0.327726629431476,0.172684981865896,0.289298117163023,0,0.54390568381871,0,0,0.481651769963376,1.17211686592203,0.819674726883377,0,0.315508219416257,0.390438744296638,0.861693590931196,0.477937595905104,0.891194696329576,0.566153061577665,1.21443210502468,1.75353514746787,1.58115111178609,0.642642632843614,0.141940085208269,0.35613120733451,1.46598263418218,0.824850614862677,1.32745138339963,0,0,0.377210159511796,0.295301892880773,0,0.258428293168221,0,0.356497378384721,0,0,0,0,1.8006109403131,1.55230420539305,0.857348140126369,1.41872186913819,0.535106452806212,0.329098041204242,0,0,1.0591603543191,0,0,0,0.180938774784468,0.238744688006273,0.164140899745061,0,0.556275906031529,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,0,1.73984796469624,0.406638934253697,1.08005340821801,0.418176592028937,0.87345025498471,0.404593039154462,0.0826534557253359,0,0,0.621339313086926,9.58277995763124,1.04661582230785,0.496375471371293,0.972255941720238,0.516639293910924,0.675824501963113,0.234714477291508,0.2604087696879,0.838874755405687,0.966336483304024,6.91272015018877,0,0.202725215290164,0.205421914329655,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0.887943813496259,0.538283139656854,0.503653849092235,0,0,0.183151624267265,0,0,1.12950368523413,0.460325236507177,1.14579102687879,1.3748254587495,0.685082519770642,1.5107877947794,0,1.35096360967266,0.906284817968409,2.07104124700728,1.66059756134683,2.39414924040619,1.87806966329548,0.486213434136588,1.04806581313991,0.367687016900028,0.888986911206461,1.03017528619447,0.320919209591815,0.505394423527595,0.25347929989024,0.565879024158229,0.655490552289177,1.08842759088278,0.976402972245426,1.90517476513229,0.695305955669133,0.964546102318525,0.412085900803307,0.441596760403192,0.342869252385415,0.887379030796687,0.953744759789284,1.16277133305863,0.658765662907314,0.761531471025089,1.09756783723664,1.05227884575137,0.407412341537585,1.12228454331548,0.949080144993393,0.788035859004508,0.409231043169689,0.77468420592983,0.771626443924566,1.49886346762768,0.701794825336225,1.07435527024149,0.191288332068843,0,0 | |||
|short_description=p6@Tmeff1 | |||
}} |
Revision as of 13:50, 5 August 2015
Short description: | p6@Tmeff1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Tmeff1_5end |
Coexpression cluster: | MCL_coexpression_mm9:335 |
Association with transcript: | 34bp_to_ENSMUST00000107703, NM_021436, uc008svk.1, uc008svl.1_5end |
EntrezGene: | 230157 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.03e-20 | 23 |
neuroblast (sensu Vertebrata) | 3.03e-20 | 23 |
neuron | 6.44e-18 | 33 |
neuronal stem cell | 6.44e-18 | 33 |
neuroblast | 6.44e-18 | 33 |
electrically signaling cell | 6.44e-18 | 33 |
electrically responsive cell | 4.81e-15 | 39 |
electrically active cell | 4.81e-15 | 39 |
neural cell | 3.91e-13 | 43 |
ectodermal cell | 1.18e-12 | 44 |
neurectodermal cell | 1.18e-12 | 44 |
neuron of cerebral cortex | 8.59e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 3.66e-18 | 49 |
neurectoderm | 1.30e-17 | 64 |
neural plate | 1.30e-17 | 64 |
presumptive neural plate | 1.30e-17 | 64 |
central nervous system | 1.33e-17 | 73 |
ectoderm-derived structure | 2.77e-17 | 95 |
ectoderm | 2.77e-17 | 95 |
presumptive ectoderm | 2.77e-17 | 95 |
nervous system | 8.37e-17 | 75 |
gray matter | 1.04e-16 | 34 |
regional part of nervous system | 8.22e-16 | 54 |
ecto-epithelium | 5.80e-15 | 73 |
neural tube | 1.50e-14 | 52 |
neural rod | 1.50e-14 | 52 |
future spinal cord | 1.50e-14 | 52 |
neural keel | 1.50e-14 | 52 |
regional part of forebrain | 3.12e-14 | 39 |
forebrain | 3.12e-14 | 39 |
future forebrain | 3.12e-14 | 39 |
anterior neural tube | 1.11e-13 | 40 |
brain grey matter | 2.58e-13 | 29 |
regional part of telencephalon | 2.58e-13 | 29 |
telencephalon | 2.58e-13 | 29 |
structure with developmental contribution from neural crest | 1.72e-12 | 92 |
regional part of brain | 6.26e-12 | 46 |
brain | 1.65e-11 | 47 |
future brain | 1.65e-11 | 47 |
cerebral cortex | 9.21e-09 | 21 |
cerebral hemisphere | 9.21e-09 | 21 |
pallium | 9.21e-09 | 21 |