FFCP PHASE1:Mm9::chrX:98615545..98615564,-: Difference between revisions
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{{FFCP|EntrezGene=56364|HGNC=|MCL_coexpression_id=22|UniProt=Q32P02,B1AXS5,Q9JLM4|association_with_transcript=0bp_to_ENSMUST00000118092,NM_001177988,NM_019831,uc009txm.2,uc009txp.2_5end|description=CAGE_peak_3_at_Zmym3_5end|id=chrX:98615545..98615564,-|ontology_enrichment_celltype=CL:0000540!7.67e-12!33;CL:0000047!7.67e-12!33;CL:0000031!7.67e-12!33;CL:0000404!7.67e-12!33;CL:0000117!2.17e-10!23;CL:0000337!2.17e-10!23;CL:0000221!2.33e-07!44;CL:0000133!2.33e-07!44;CL:0000393!3.15e-07!39;CL:0000211!3.15e-07!39;CL:0002319!4.36e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,3.33e-15,33;CL:0000047,3.33e-15,33;CL:0000031,3.33e-15,33;CL:0000404,3.33e-15,33;CL:0000117,1.21e-14,23;CL:0000337,1.21e-14,23;CL:0000393,2.56e-11,39;CL:0000211,2.56e-11,39;CL:0000221,1.82e-10,44;CL:0000133,1.82e-10,44;CL:0002319,4.53e-10,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!6.06e-15!71;UBERON:0003075!6.06e-15!71;UBERON:0007284!6.06e-15!71;UBERON:0001017!9.25e-14!73;UBERON:0005743!9.25e-14!73;UBERON:0000153!3.55e-13!94;UBERON:0003056!4.97e-13!49;UBERON:0000073!6.20e-13!75;UBERON:0001016!6.20e-13!75;UBERON:0001049!3.11e-12!52;UBERON:0005068!3.11e-12!52;UBERON:0006241!3.11e-12!52;UBERON:0007135!3.11e-12!52;UBERON:0004121!5.42e-12!102;UBERON:0000924!5.42e-12!102;UBERON:0006601!5.42e-12!102;UBERON:0007811!4.55e-11!86;UBERON:0000033!6.74e-11!63;UBERON:0003080!1.41e-10!40;UBERON:0002780!2.52e-10!39;UBERON:0001890!2.52e-10!39;UBERON:0006240!2.52e-10!39;UBERON:0002020!5.08e-10!34;UBERON:0002616!4.91e-09!49;UBERON:0000955!7.93e-09!50;UBERON:0006238!7.93e-09!50;UBERON:0002791!3.21e-07!29;UBERON:0003528!3.21e-07!29;UBERON:0001893!3.21e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.38e-16,64;UBERON:0003075,1.38e-16,64;UBERON:0007284,1.38e-16,64;UBERON:0001017,2.01e-14,73;UBERON:0010371,2.75e-14,73;UBERON:0003056,1.26e-13,49;UBERON:0001016,1.29e-13,75;UBERON:0010314,3.83e-13,92;UBERON:0004121,8.68e-13,95;UBERON:0000924,8.68e-13,95;UBERON:0006601,8.68e-13,95;UBERON:0001049,1.55e-12,52;UBERON:0005068,1.55e-12,52;UBERON:0006241,1.55e-12,52;UBERON:0007135,1.55e-12,52;UBERON:0000073,2.15e-12,54;UBERON:0003080,1.54e-11,40;UBERON:0002780,3.49e-11,39;UBERON:0001890,3.49e-11,39;UBERON:0006240,3.49e-11,39;UBERON:0002020,1.27e-10,34;UBERON:0002616,1.93e-09,46;UBERON:0000955,4.91e-09,47;UBERON:0006238,4.91e-09,47;UBERON:0003528,5.31e-07,29;UBERON:0002791,5.31e-07,29;UBERON:0001893,5.31e-07,29|phase1_expression=1.44133962394315,0,0,0,0,0,0.233612640595526,0.129123323441576,0.281577444303333,0.234064526321993,0.34243593645101,0,0.171200729931206,0,0,0,0,0.157731082679119,0.274228867211478,0,0.340173160604279,1.98581902401771,1.04479915655574,0.159992422793407,0,0,0.430761996159075,0,0.190023419456374,0,0,0,0,0,0,0.332469290716985,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0.659058548203415,0.194429899074283,0.139986421625363,0,0.335565212115473,0,0,0,0,0,4.65327859977075,7.93486468908049,2.53532561402472,1.35537812827653,0.889294796111139,0,0,0,0,1.15265491596466,2.48855069540346,2.29510095163874,2.73422449756797,3.14216082844184,2.87129103237098,2.69479758272899,3.25874601462004,3.67687514644008,0,0.893811366596314,1.22885226604995,6.98997324970027,7.31901148819277,6.77187381723788,0,2.25105044012672,1.37518422999129,3.83017161115768,4.9830088279686,5.59198337475902,0.075726193333184,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,1.40843419776681,0,0,0,0.216491041011214,0.253359865475099,0,0,0.258937883647172,0.148442139064825,0.693941307064543,1.21786191324856,0.461230994512117,0.60289056221049,0.117588707135705,0.251333182659351,0,0,0,0.323533699894818,0.220841518460394,0,0,1.17112318804619,0.83778682725382,0,0.239630249011841,0.599902730993408,1.01656181658452,1.3481157546434,0,4.14659361972453,0.869121600961382,1.27857728665165,1.0389402227978,1.1356888414743,0.916554274652847,0.124406970610093,0.758168275301024,0.210441855886474,1.82168620147785,0.919608417733892,2.34080768746954,1.65775299619287,2.72145996605311,1.7935920839879,2.43624483855295,0.776110112217047,4.095791865724,3.59301552318857,2.81521798662318,1.97276159184817,1.94633074457919,0.696504333044333,0.411564272815887,0.59710280045548,0.702213187313235,0.772043721344145,1.42081749697796,0.621377317606506,1.87620847984877,1.2604344302271,1.18372367792605,1.18058539048442,1.07986979021165,1.16266972375204,2.14618721119695,0.700592054203017,0.493679549740441,0,0.162137619091711,0.292399974850665,0,0,0.630869845692382,3.19004298375782,0,0,1.49301775374664,1.62565670302307,1.80414445850931,1.00841762311671,0.667134131534611,0.190225626112559,0,0.164698954724011,0.251335208800269,0.795825888164603,0,0,0,0.199141273254367,1.13800740571849,1.48523066392647,4.50830942692322,1.22190796707189,0.193952487167626,1.19230893813542,0.505892296994058,0.442830443938806,0,0,0,0.333690211432188,0.393117990226406,0.449724224769707,0.811440485554012,0,0.25462585178142,0,0.324270453550071,0,0,0,0.312037673114561,0,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56364 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q32P02,uniprot:B1AXS5,uniprot:Q9JLM4 | |||
|association_with_transcript=0bp_to_ENSMUST00000118092,NM_001177988,NM_019831,uc009txm.2,uc009txp.2_5end | |||
|cluster_id=chrX:98615545..98615564,- | |||
|description=CAGE_peak_3_at_Zmym3_5end | |||
|id=chrX:98615545..98615564,- | |||
|ontology_enrichment_celltype=CL:0000540!7.67e-12!33;CL:0000047!7.67e-12!33;CL:0000031!7.67e-12!33;CL:0000404!7.67e-12!33;CL:0000117!2.17e-10!23;CL:0000337!2.17e-10!23;CL:0000221!2.33e-07!44;CL:0000133!2.33e-07!44;CL:0000393!3.15e-07!39;CL:0000211!3.15e-07!39;CL:0002319!4.36e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.33e-15,33;CL:0000047,3.33e-15,33;CL:0000031,3.33e-15,33;CL:0000404,3.33e-15,33;CL:0000117,1.21e-14,23;CL:0000337,1.21e-14,23;CL:0000393,2.56e-11,39;CL:0000211,2.56e-11,39;CL:0000221,1.82e-10,44;CL:0000133,1.82e-10,44;CL:0002319,4.53e-10,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.06e-15!71;UBERON:0003075!6.06e-15!71;UBERON:0007284!6.06e-15!71;UBERON:0001017!9.25e-14!73;UBERON:0005743!9.25e-14!73;UBERON:0000153!3.55e-13!94;UBERON:0003056!4.97e-13!49;UBERON:0000073!6.20e-13!75;UBERON:0001016!6.20e-13!75;UBERON:0001049!3.11e-12!52;UBERON:0005068!3.11e-12!52;UBERON:0006241!3.11e-12!52;UBERON:0007135!3.11e-12!52;UBERON:0004121!5.42e-12!102;UBERON:0000924!5.42e-12!102;UBERON:0006601!5.42e-12!102;UBERON:0007811!4.55e-11!86;UBERON:0000033!6.74e-11!63;UBERON:0003080!1.41e-10!40;UBERON:0002780!2.52e-10!39;UBERON:0001890!2.52e-10!39;UBERON:0006240!2.52e-10!39;UBERON:0002020!5.08e-10!34;UBERON:0002616!4.91e-09!49;UBERON:0000955!7.93e-09!50;UBERON:0006238!7.93e-09!50;UBERON:0002791!3.21e-07!29;UBERON:0003528!3.21e-07!29;UBERON:0001893!3.21e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.38e-16,64;UBERON:0003075,1.38e-16,64;UBERON:0007284,1.38e-16,64;UBERON:0001017,2.01e-14,73;UBERON:0010371,2.75e-14,73;UBERON:0003056,1.26e-13,49;UBERON:0001016,1.29e-13,75;UBERON:0010314,3.83e-13,92;UBERON:0004121,8.68e-13,95;UBERON:0000924,8.68e-13,95;UBERON:0006601,8.68e-13,95;UBERON:0001049,1.55e-12,52;UBERON:0005068,1.55e-12,52;UBERON:0006241,1.55e-12,52;UBERON:0007135,1.55e-12,52;UBERON:0000073,2.15e-12,54;UBERON:0003080,1.54e-11,40;UBERON:0002780,3.49e-11,39;UBERON:0001890,3.49e-11,39;UBERON:0006240,3.49e-11,39;UBERON:0002020,1.27e-10,34;UBERON:0002616,1.93e-09,46;UBERON:0000955,4.91e-09,47;UBERON:0006238,4.91e-09,47;UBERON:0003528,5.31e-07,29;UBERON:0002791,5.31e-07,29;UBERON:0001893,5.31e-07,29 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0.233612640595526,0.129123323441576,0.281577444303333,0.234064526321993,0.34243593645101,0,0.171200729931206,0,0,0,0,0.157731082679119,0.274228867211478,0,0.340173160604279,1.98581902401771,1.04479915655574,0.159992422793407,0,0,0.430761996159075,0,0.190023419456374,0,0,0,0,0,0,0.332469290716985,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0.659058548203415,0.194429899074283,0.139986421625363,0,0.335565212115473,0,0,0,0,0,4.65327859977075,7.93486468908049,2.53532561402472,1.35537812827653,0.889294796111139,0,0,0,0,1.15265491596466,2.48855069540346,2.29510095163874,2.73422449756797,3.14216082844184,2.87129103237098,2.69479758272899,3.25874601462004,3.67687514644008,0,0.893811366596314,1.22885226604995,6.98997324970027,7.31901148819277,6.77187381723788,0,2.25105044012672,1.37518422999129,3.83017161115768,4.9830088279686,5.59198337475902,0.075726193333184,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,1.40843419776681,0,0,0,0.216491041011214,0.253359865475099,0,0,0.258937883647172,0.148442139064825,0.693941307064543,1.21786191324856,0.461230994512117,0.60289056221049,0.117588707135705,0.251333182659351,0,0,0,0.323533699894818,0.220841518460394,0,0,1.17112318804619,0.83778682725382,0,0.239630249011841,0.599902730993408,1.01656181658452,1.3481157546434,0,4.14659361972453,0.869121600961382,1.27857728665165,1.0389402227978,1.1356888414743,0.916554274652847,0.124406970610093,0.758168275301024,0.210441855886474,1.82168620147785,0.919608417733892,2.34080768746954,1.65775299619287,2.72145996605311,1.7935920839879,2.43624483855295,0.776110112217047,4.095791865724,3.59301552318857,2.81521798662318,1.97276159184817,1.94633074457919,0.696504333044333,0.411564272815887,0.59710280045548,0.702213187313235,0.772043721344145,1.42081749697796,0.621377317606506,1.87620847984877,1.2604344302271,1.18372367792605,1.18058539048442,1.07986979021165,1.16266972375204,2.14618721119695,0.700592054203017,0.493679549740441,0,0.162137619091711,0.292399974850665,0,0,0.630869845692382,3.19004298375782,0,0,1.49301775374664,1.62565670302307,1.80414445850931,1.00841762311671,0.667134131534611,0.190225626112559,0,0.164698954724011,0.251335208800269,0.795825888164603,0,0,0,0.199141273254367,1.13800740571849,1.48523066392647,4.50830942692322,1.22190796707189,0.193952487167626,1.19230893813542,0.505892296994058,0.442830443938806,0,0,0,0.333690211432188,0.393117990226406,0.449724224769707,0.811440485554012,0,0.25462585178142,0,0.324270453550071,0,0,0,0.312037673114561,0,0,0,0,1.70542270593436,1.14075483509418,0.509235257325564,0.469380496577004,0.335012514883631,0.238043640886014,0.195133647857799,0.157635144106191,0.44292937929755,0.318909537314974,0,0,0.144649058581512,0,0,0.491764273019036,0,0.642202359951168,0.820481806145422,0.163934945376675,0,1.57754109708128,1.95219372148319,2.58508077279359,0.238968797952552,0.891194696329576,0.566153061577665,1.21443210502468,1.16902343164525,1.18586333383957,0.321321316421807,0.141940085208269,1.6025904330053,1.14020871547503,0.164970122972535,0,0.971122544619926,0.302323556964751,0.754420319023592,0,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,1.02131881726136,1.26042765821917,1.68166288917581,1.92903331528433,1.41872186913819,2.85390108163313,2.96188237083818,1.522324745573,0,0,0.220528398054962,0,0.484393280087717,0.542816324353403,0.358117032009409,0.164140899745061,0,0.927126510052548,0.170870880797853,0.619160603889667,0.740778109478847,0.941842285023455,0.136694227721025,0.457556346413045,1.35982743995084,1.39951452323658,0.414599921413271,0,1.58167996790568,1.62655573701479,1.40406943068342,0.418176592028937,0.655087691238533,0.674321731924103,0.0826534557253359,0.26175594198403,0,0,0.56369293868419,1.79419855252775,2.31641886639937,0.583353565032143,1.29159823477731,0.844780627453891,0.704143431874524,1.43224823328345,2.20204623293993,0.483168241652012,0,0.316011120628178,1.41907650703115,1.33524244314275,1.55904987573354,1.25318686967237,1.39076948346885,1.20195449519969,1.9199638532695,1.71642964911851,1.82896335972,1.41156659191577,1.16949456887703,1.53938946624527,1.8700304349051,0.226730383615211,0.221985953374065,0.0897138566094757,0,0,0,0.36630324853453,0.428736758158132,0,3.3885110557024,0.460325236507177,2.29158205375759,0.68741272937475,0.685082519770642,1.5107877947794,0.675022500231806,1.80128481289688,0.453142408984205,1.55328093525546,1.3492355185943,3.59122386060928,2.73173769206615,1.21553358534147,0.838452650511929,0.735374033800057,0.44449345560323,0.206035057238894,1.60459604795908,0.758091635291392,0.760437899670719,0.565879024158229,0.936415074698824,0.576226371643824,1.37845125493472,1.90517476513229,1.0429589335037,1.35036454324594,0.824171801606613,0.883193520806384,1.37147700954166,0.70990322463735,0.238436189947321,0.290692833264657,0.846984423737976,0.930760686808441,0.365855945745545,0.263069711437843,0.814824683075171,0,0.949080144993393,0.886540341380071,0.409231043169689,0.929621047115796,0.771626443924566,1.99848462350357,0.467863216890817,0.859484216193193,0.57386499620653,0.441182838239031,0.231867835620421 | |||
|short_description=p3@Zmym3 | |||
}} |
Revision as of 11:09, 6 August 2015
Short description: | p3@Zmym3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Zmym3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000118092, NM_001177988, NM_019831, uc009txm.2, uc009txp.2_5end |
EntrezGene: | 56364 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.33e-15 | 33 |
neuronal stem cell | 3.33e-15 | 33 |
neuroblast | 3.33e-15 | 33 |
electrically signaling cell | 3.33e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.21e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.21e-14 | 23 |
electrically responsive cell | 2.56e-11 | 39 |
electrically active cell | 2.56e-11 | 39 |
ectodermal cell | 1.82e-10 | 44 |
neurectodermal cell | 1.82e-10 | 44 |
neural cell | 4.53e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.38e-16 | 64 |
neural plate | 1.38e-16 | 64 |
presumptive neural plate | 1.38e-16 | 64 |
central nervous system | 2.01e-14 | 73 |
ecto-epithelium | 2.75e-14 | 73 |
pre-chordal neural plate | 1.26e-13 | 49 |
nervous system | 1.29e-13 | 75 |
structure with developmental contribution from neural crest | 3.83e-13 | 92 |
ectoderm-derived structure | 8.68e-13 | 95 |
ectoderm | 8.68e-13 | 95 |
presumptive ectoderm | 8.68e-13 | 95 |
neural tube | 1.55e-12 | 52 |
neural rod | 1.55e-12 | 52 |
future spinal cord | 1.55e-12 | 52 |
neural keel | 1.55e-12 | 52 |
regional part of nervous system | 2.15e-12 | 54 |
anterior neural tube | 1.54e-11 | 40 |
regional part of forebrain | 3.49e-11 | 39 |
forebrain | 3.49e-11 | 39 |
future forebrain | 3.49e-11 | 39 |
gray matter | 1.27e-10 | 34 |
regional part of brain | 1.93e-09 | 46 |
brain | 4.91e-09 | 47 |
future brain | 4.91e-09 | 47 |
brain grey matter | 5.31e-07 | 29 |
regional part of telencephalon | 5.31e-07 | 29 |
telencephalon | 5.31e-07 | 29 |