FFCP PHASE1:Hg19::chr12:10365579..10365590,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23710 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4068 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=52bp_to_ENST00000545887_5end | |||
|cluster_id=chr12:10365579..10365590,+ | |||
|description=CAGE_peak_3_at_GABARAPL1_5end | |||
|id=chr12:10365579..10365590,+ | |||
|ontology_enrichment_celltype=CL:0000860!2.55e-15!45;CL:0002057!2.64e-15!42;CL:0000766!1.88e-08!76;CL:0002194!6.28e-07!63;CL:0000576!6.28e-07!63;CL:0000040!6.28e-07!63;CL:0000559!6.28e-07!63;CL:0000094!6.78e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.05e-12;33!CL:0002057;2.05e-12;33!CL:0000576;1.31e-08;48!CL:0000094;2.21e-08;8!CL:0000473;4.46e-08;39!CL:0000234;4.46e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.79e-18,42;CL:0002057,2.79e-18,42;CL:0000473,5.42e-14,48;CL:0000234,5.42e-14,48;CL:0000766,1.07e-11,72;CL:0002194,3.57e-09,59;CL:0000576,3.57e-09,59;CL:0000040,3.57e-09,59;CL:0000559,3.57e-09,59;CL:0002009,1.91e-08,61;CL:0000094,2.52e-08,8;CL:0000557,3.44e-07,67;CL:0000839,7.20e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;4.56e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.52e-13!115;UBERON:0002616!2.32e-10!59;UBERON:0000062!3.44e-10!511;UBERON:0001049!2.56e-09!57;UBERON:0005068!2.56e-09!57;UBERON:0006241!2.56e-09!57;UBERON:0007135!2.56e-09!57;UBERON:0000955!7.78e-09!69;UBERON:0006238!7.78e-09!69;UBERON:0003075!1.64e-08!86;UBERON:0007284!1.64e-08!86;UBERON:0002346!2.18e-08!90;UBERON:0000468!2.44e-08!659;UBERON:0005743!3.93e-08!86;UBERON:0001017!5.24e-08!82;UBERON:0002780!1.41e-07!41;UBERON:0001890!1.41e-07!41;UBERON:0006240!1.41e-07!41;UBERON:0000073!5.05e-07!94;UBERON:0001016!5.05e-07!94;UBERON:0003080!5.35e-07!42;UBERON:0002020!9.97e-07!34;UBERON:0003528!9.97e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.97e-08;22!UBERON:0001950;7.87e-08;20!UBERON:0001869;1.61e-07;32!UBERON:0003528;2.92e-07;34!UBERON:0002020;2.92e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.21e-14,114;UBERON:0001049,4.43e-11,56;UBERON:0005068,4.43e-11,56;UBERON:0006241,4.43e-11,56;UBERON:0007135,4.43e-11,56;UBERON:0000073,8.73e-11,53;UBERON:0002616,8.73e-11,53;UBERON:0000955,8.84e-10,68;UBERON:0006238,8.84e-10,68;UBERON:0003075,1.01e-09,82;UBERON:0007284,1.01e-09,82;UBERON:0002346,2.67e-09,86;UBERON:0001017,4.22e-09,81;UBERON:0002780,1.09e-08,41;UBERON:0001890,1.09e-08,41;UBERON:0003080,1.09e-08,41;UBERON:0006240,1.09e-08,41;UBERON:0001869,1.39e-08,32;UBERON:0003528,1.57e-08,34;UBERON:0002020,1.57e-08,34;UBERON:0002619,1.94e-08,22;UBERON:0001950,3.71e-08,20;UBERON:0001893,1.41e-07,34;UBERON:0002791,1.60e-07,32;UBERON:0001016,1.86e-07,89;UBERON:0010371,4.61e-07,104;UBERON:0003056,6.14e-07,61 | |||
|phase1_expression=2.90685406832891,2.14100523890983,7.89344662937438,1.0007329835313,10.7270662662549,11.3404008133048,0,0,0.783556884599516,0.491467873003018,0,0.218441372130172,2.37390280405608,0.74259811776028,2.65117900582333,2.01697543935533,2.41077811209591,2.92124036154949,0.975865597581014,0.61560529038394,0.612002073732759,0.313454721478088,0,0.273748850145768,0.251085279189606,0,0,0,7.47392126012918,9.97956435052753,10.217864138861,0,0.30120591877825,0,0,0,0.587200878669695,9.41792194504192,9.82667792603694,6.2933152507597,0.223915474239924,0,0,2.61716829803216,3.40088349319928,1.94067248950253,3.0215774797739,4.52284676824008,1.85823822537062,4.31538588483226,2.30544635876191,0.945928919554341,4.82643953031266,3.87290810150296,5.41705946377367,4.1413314699373,3.0019676506363,3.59557575112135,3.67300670845083,1.28371610830437,7.03270838378945,3.29851300186716,2.39356389145958,2.13112375266347,4.35313857942876,1.70215567407342,1.24564449799115,2.26123798731069,2.60741459210101,1.73751075764093,1.21079900526674,1.47311054395026,1.89877432464531,2.5350634357433,1.70083439972035,1.67726916406701,1.34794357375794,2.25265339262259,1.92870704036496,2.28010194992999,1.59133341759272,1.27864907635244,0,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,1.14681968437569,0,2.24203425192614,0,0.983548850569165,1.17903228824749,0.822405995998037,0.167186495390678,1.30368906653436,1.89379122293893,0,0,0.883817722424512,0.443067789167242,0.541607727530031,0,0.130059347559878,0,0,0.289803085735052,0.296573126324121,0.535081656179426,1.04535523804977,0,0,0.34362744548263,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,2.21767417547206,5.88368430723716,4.05508330871837,0,1.34140171940727,0.767175371061182,0.361439152384566,0.50133791063589,2.60723734129483,0,2.43317435151318,0.283604451492204,1.10864698731282,0.351339142772504,1.96468613246569,0,0,0.324547393654683,0.174129737299267,0.531831842075461,3.81584998888547,0.571994910780128,2.97166001063652,0.198762407366705,0.860234595106124,0.347140501607594,2.26123176769604,1.25849830862972,0,0.417989933073621,0,0,0,1.61131726843659,0,0.976248230192678,0.367663080345869,0,0.267899184852239,0,0.337834441449967,1.53316637465883,0,0.732806975721629,39.534125230819,31.022421131866,0,1.49091585508596,0.759783069987479,1.32409180813219,2.86836620748814,0,1.12135520028461,0,0.24666754841716,0.311211035399766,0.808264032418128,0.163461903113459,1.96764655938411,2.30470369792,0.234321431833797,0.312160076830321,0,0.149448680551801,0,0.323745888736263,0.280901613404497,0.408308342509787,0,1.75653827998801,0,0.494533858557114,0.910161361938026,2.15585442544872,0.168336113954066,0.375355559615893,0,0.877955241761676,0.30648779579902,2.55404700141215,0.340296549480063,1.4351170855109,1.06778694409284,1.69545520927649,1.50045548042201,1.33968288009971,1.54584324027377,0.558350568994769,0.168776332241266,1.65642908774038,1.51460264546469,2.85354685791128,2.26304479546337,2.84007674013291,1.91428986632517,1.52604533079439,0,0.272746120590835,0.286804595389004,0.853815942907168,0.530119073285941,0.580969714347592,0.932949495138334,1.26160425437814,1.09493207722749,1.56449532329816,1.92972281457866,0,1.85747171212792,1.44375896333917,1.65629520055781,2.36018566109342,2.16909926895134,1.8749975364507,1.52515610864684,1.18635309555548,1.34831308160164,2.74710051175484,5.00171304030308,0,0,0,2.94017422771084,3.80265104465493,1.96565443335525,1.18157981336281,0,0.245976877086227,1.20097467208968,0.439001141634502,0,0,0,3.9096996637239,0,1.44331342025273,0.115930404975077,1.87853910777315,1.01056513432752,1.85194205030644,1.90254152234598,0,0,0.246217006087397,0.468008530278475,0.148631162288728,0,0.16798212819886,0.141775097242386,0,0,0,0,0.088048434013226,0.414656231081544,0,0,0.126995788584338,0.763976851116555,2.34434894420094,0,0.102827492703324,0.600686115687835,1.42913216315289,1.00917975910825,0.87192013766656,0.22001485746285,1.42198887333556,0,0,4.5209479819428,22.8816361205005,0,0,0,4.14636181608628,1.62786481617433,0,0,2.13235169245527,0.791951872933429,0,1.74306691720059,1.09970290300263,0,0,0,0.239624855491583,3.44585807502342,1.42636905040718,0.868687840005475,0.205476322550383,0.358121926479791,0.112085143993527,0.985153801009636,1.50939302401662,0.77005821767849,0,1.30139853857622,0.773288812777695,0,0,11.2351053592077,8.97484377612075,10.3603878359009,1.34960640891054,1.50051156317903,0.813795071099207,1.03985430765404,0.535286966391485,1.26161932027148,0.234282829985426,0.902838299183157,6.82222512167955,1.03473071292505,0,0.368738337083406,1.04260337361699,0.783204629850962,2.05886054286514,3.10152039184331,7.33428282783297,2.02782359826544,0.303127571446259,0,0.604780586659361,6.20269519546942,1.53461973288062,3.64858122762996,8.58532300013196,4.09365799253363,4.66476371316462,13.3576259800492,0.154209693802656,0.532685175939381,0.246381468041427,0,0.232420756919918,0.725156697549733,1.80455823272956,0.0920809889358963,2.52591785962135,2.1850940160806,10.2277043668351,0,0.0770153371044148,0,0,0.633309773357254,0,0.510281115829547,0,1.54227252690289,1.62567862526312,0.501689773854853,0.509752546090077,0.831076008928724,0.223874754722178,0.438519753291869,0.784306353074702,0.256450125116389,0.984043937099117,0.976135183992909,3.09123034943167,0,0.082509499920588,2.29706215198469,0,1.6068392984416,0.580024309752732,0.154048617114644,0,0.137836572484531,0.537101224341368,0.145016693914229,0.0852266274161009,0.0890320356467374,0.661139661443912,0.384380134730212,0.255225424989168,0.4046311234222,1.85938219718914,0.31481234683064,0,0,0,0,0.74129687641568,1.14499909393593,1.86079184679834,0.632758849437452,2.85945290885737,1.02359116524534,2.1396949401696,0.318203247925937,0.78494864019923,5.93579110024939,9.05972198128981,4.12343408209902,1.01091240786658,0,0,3.90106991271672,0.731140468893853,1.05650146756755,1.63799893689583,7.35308246159306,0,0,0.66343897524122,2.19225442626881,2.31510213706675,1.31178950409327,1.01455188481352,0,0.281695602532241,0.573645408816206,0.392996164052485,0.7133421029625,0,2.74439925886963,1.31717957183961,0.379473173765715,1.39973888097993,0.0962221127255121,0,0,3.85989583184795,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0.213648142254946,0,1.22520107990516,0,0,0,0.159426272728822,0.199579371432817,0,0,0,0.561594356226918,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0.270455678475983,0,0,0,1.46508179271894,0,0,0.568272293612826,0.71623345421307,0.593929361665277,0.307160702099232,1.9882952955326,1.68803299692615,0.890469640183247,0.16480387422676,0.211125408127993,1.79323189425963,0.552567831062295,0,0.511343412510774,0,0,0.0898683511473268,0.179021174675609,0,2.66337195219721,0,0,1.93866549219044,3.06134723934109,0,0,0,0,0.568967241427498,0,0,0,0,0,1.77148277162768,1.68835014075571,1.52581736317083,1.54810963903714,1.77328571372128,1.75508317723178,1.41620002574687,0.975966209950223,1.23120413606075,1.93701494939902,0.23056390438806,0.269272933229316,0.325942115766024,2.23300811812344,3.57230614267263,1.5991043280559,0,0,0,0,0.19606253431774,0,0,0.158936578980379,0.210998064528027,0.326465616318295,0.282706142867882,0.432777279484182,0,0.707660516026713,1.22206028986725,0,0.247127877893006,0,0.471807930864739,0,3.74823113160543,0,0.19566461893209,0.242780379534093,0.394584402849391,1.20990716048664,0,2.78020950365347,1.50323419414493,0.414752765588989,0,0.330991955875499,0,0,0.569219092059585,0,0,0.489961987071888,0.174118413160805,0.698906672968121,0,1.16107597546902,1.5348756588099,0.903270027585302,0.775912131907355,1.412098027064,2.03382666702479,0.137041924646751,0,4.49506651286739,0,0.961905843018405,1.92107695265417,1.39866726707491,0,0.229073192331831,0.171594997861965,0,0.124252535565433,0.471388069233591,0.135904206073614,0,1.01998217636322,0.577901179803038,1.20084057741958,1.09524303113594,2.55493176133945,0.859530882839914,0,3.35138881526705,1.3749625440701,7.17873024576814,7.38812301846267,20.6028503105554,6.69514372325618,0.940568614814168,1.08089965062721,2.32991899054908,0,0.0824158583811665,0,0.196854963029498,0,1.59045937961861,1.22583065500418,0.160753148465019,0.687697182986169,1.66176135211674,0.2249738915515,0,5.10296275927407,0.335434687599266,3.54625682846392,1.25891011523995,1.6896053843105,2.33073541132698,0.575745591958336,5.00286728461357,12.5797474369432,0,2.71499800876856,0,0.979762080328227,1.19730191562487,0.164185041498678,0.511164065356265,0.906496732161005,2.93104467356165,0,4.52490347265427,3.04134984008187,0.342173675768659,0,1.38823636338003,2.04365596629566,1.65695622138878,0,0,0,0,1.08803560673895,0.7520696820681,0.612691153526923,3.27872630709804,0,2.65820453990096,3.90484047686282,2.754200475543,2.86704597845036,1.66393577305278,4.47094101177961,0.968440444553616,0,0,1.14186133417987,0.235265819698172,0.468334905806882,1.1593682288866,0.74627401443437,1.16856654923612,0.554805861502613,0.378806010550178,0.251567901752575,0.889811221596536,1.14420034198462,0.756154618816195,0.777186002913902,1.03498604992744,0.955780602982214,2.69881867298163,0.776314784381297,2.48823724704513,0.265841714557995,1.5652351854352,0.751288044986092,1.52322084867518,0.406870733204662,1.09109195521536,1.71856891267982,1.39210127963548,2.78667122089031,0,0.343395705182793,0.336749488765919,0,0.57785949122191,1.28664954824955,1.30497145982606,0.906823702049089,1.85217979459067,0.97894681802587,0.71635536432595,2.16161013012681,1.31570429747224,0.176689145945881,0.771656153083659,0.844712203265363,0.512483037175893,1.38172136692479,1.82315973706429,2.07387654227596,0.194860308839388,0.132864840313363,0.327130788511688,0.982829546539238,2.21195617878347,0.211312123358627,0.19998739585493,0,0,0,0.184105950251841,0.139879507719444,0,0,0,0.943595651135378,0,0.33946505990805,1.06287460050841,1.23935764259002,0.558644917973244,1.27201740261367,0,0.80057074828547,1.05802783107205,7.65613693383001,3.0187735795336,2.8339315265117,1.43670473151436,6.15349092722265,0.252071696221718,4.97932217742369,3.39098855826887,1.42769420259154,0.294443155503077,1.06172751012966,0.733714394086716,0.808679663052368,0,0,0,1.72983755203292,0.20170506870352,1.56302802246618,0,1.47394725759087,0.739280431085226,4.52501816943244,9.37293718336617,2.89361515101658,4.43910671357348,0,1.09651553371436,0,0.351742488719241,1.02209942111676,3.74991285114801,1.00885116665647,5.46269043812968,4.09791944432336,6.20916591138472,0.115233987555779,0.342976018874837,7.0688522295905,6.24841348847066,0.236387681767936,0,1.33438257845874,1.57115589916002,0.840816489941367,0,0,0,2.21577286947635,1.10609528212909,0.23248285073625,0.173858272302579,9.62053637676303,0.207216164163037,0.51215543128185,0,2.15113679410139,0.828324005113957,0.255640214277473,0.423387050190929,1.3746412112643,0.93061915699296,0,6.59947047606975,0,0.365753774946808,11.6537190693821,12.9355136638871,0,0.971421986118279,0.467878926924211,0.397901550322736,0,0.33883824611688,0.549702583727146,0.301925687133347,0.385870790539723,0,0,0.735444965261716,0.235676547101626,1.76677620403451,0,3.3812458206672,1.69927114687817,0.281951753939561,0.128915775947154,0,0.535661815816973,0,0.722172300202514,2.19100916473955,0.458729283404541,0.286679166302903,0.473314686579554,4.01149792126397,0,0,1.11598505450025,3.23522940041993,0.432626562123789,0.126166424835079,1.31118686356435,0.506794004045748,4.18154201942125,4.80991329478009,5.60558887162554,1.0028301571695,0.303114792872958,0.267964130156178,0.829169439458779,0.413731983447581,0.426467963801962,0.952257725854961,0,0.31037357147929,0.33639558774184,1.20929600728513,1.0105859447911,2.61260097476354,0.342233301085281,0.471464371102113,1.36272190246085,1.33064142618405,0.325613074443898,0.533636729388577,5.7921684686082,0.538951212639521,7.03922827210363,0.611207220914332,0,2.66302709674205,1.00636896795513,0 | |||
|short_description=p3@GABARAPL1 | |||
}} |
Latest revision as of 22:25, 15 September 2015
Short description: | p3@GABARAPL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GABARAPL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 52bp_to_ENST00000545887_5end |
EntrezGene: | GABARAPL1 |
HGNC: | 4068 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.79e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.79e-18 | 42 |
defensive cell | 5.42e-14 | 48 |
phagocyte | 5.42e-14 | 48 |
myeloid leukocyte | 1.07e-11 | 72 |
monopoietic cell | 3.57e-09 | 59 |
monocyte | 3.57e-09 | 59 |
monoblast | 3.57e-09 | 59 |
promonocyte | 3.57e-09 | 59 |
macrophage dendritic cell progenitor | 1.91e-08 | 61 |
granulocyte | 2.52e-08 | 8 |
granulocyte monocyte progenitor cell | 3.44e-07 | 67 |
myeloid lineage restricted progenitor cell | 7.20e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.21e-14 | 114 |
neural tube | 4.43e-11 | 56 |
neural rod | 4.43e-11 | 56 |
future spinal cord | 4.43e-11 | 56 |
neural keel | 4.43e-11 | 56 |
regional part of nervous system | 8.73e-11 | 53 |
regional part of brain | 8.73e-11 | 53 |
brain | 8.84e-10 | 68 |
future brain | 8.84e-10 | 68 |
neural plate | 1.01e-09 | 82 |
presumptive neural plate | 1.01e-09 | 82 |
neurectoderm | 2.67e-09 | 86 |
central nervous system | 4.22e-09 | 81 |
regional part of forebrain | 1.09e-08 | 41 |
forebrain | 1.09e-08 | 41 |
anterior neural tube | 1.09e-08 | 41 |
future forebrain | 1.09e-08 | 41 |
cerebral hemisphere | 1.39e-08 | 32 |
brain grey matter | 1.57e-08 | 34 |
gray matter | 1.57e-08 | 34 |
regional part of cerebral cortex | 1.94e-08 | 22 |
neocortex | 3.71e-08 | 20 |
telencephalon | 1.41e-07 | 34 |
regional part of telencephalon | 1.60e-07 | 32 |
nervous system | 1.86e-07 | 89 |
ecto-epithelium | 4.61e-07 | 104 |
pre-chordal neural plate | 6.14e-07 | 61 |