FFCP PHASE1:Hg19::chr12:103835494..103835510,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=374470 | |EntrezGene=374470 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24729 | |HGNC=24729 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-121bp_to_ENST00000552977_5end | |association_with_transcript=-121bp_to_ENST00000552977_5end | ||
|cluster_id=chr12:103835494..103835510,- | |||
|coexpression_cluster_id=C272 | |||
|description=CAGE_peak_5_at_C12orf42_5end | |description=CAGE_peak_5_at_C12orf42_5end | ||
|id=chr12:103835494..103835510,- | |id=chr12:103835494..103835510,- | ||
|ontology_enrichment_celltype=CL:0000542!5.33e-49!53;CL:0000051!5.33e-49!53;CL:0000838!1.83e-47!52;CL:0000791!1.14e-27!18;CL:0000789!1.14e-27!18;CL:0002420!1.14e-27!18;CL:0002419!1.14e-27!18;CL:0000790!1.14e-27!18;CL:0000738!6.14e-25!140;CL:0000084!8.42e-23!25;CL:0000827!8.42e-23!25;CL:0000236!5.82e-22!14;CL:0002087!1.04e-21!119;CL:0000945!3.13e-21!24;CL:0000826!3.13e-21!24;CL:0000037!5.68e-21!172;CL:0000566!5.68e-21!172;CL:0002031!3.32e-20!124;CL:0000625!8.86e-20!11;CL:0000988!6.83e-19!182;CL:0002032!1.20e-17!165;CL:0000837!1.20e-17!165;CL:0000624!1.83e-11!6;CL:0000898!5.94e-07!3 | |ontology_enrichment_celltype=CL:0000542!5.33e-49!53;CL:0000051!5.33e-49!53;CL:0000838!1.83e-47!52;CL:0000791!1.14e-27!18;CL:0000789!1.14e-27!18;CL:0002420!1.14e-27!18;CL:0002419!1.14e-27!18;CL:0000790!1.14e-27!18;CL:0000738!6.14e-25!140;CL:0000084!8.42e-23!25;CL:0000827!8.42e-23!25;CL:0000236!5.82e-22!14;CL:0002087!1.04e-21!119;CL:0000945!3.13e-21!24;CL:0000826!3.13e-21!24;CL:0000037!5.68e-21!172;CL:0000566!5.68e-21!172;CL:0002031!3.32e-20!124;CL:0000625!8.86e-20!11;CL:0000988!6.83e-19!182;CL:0002032!1.20e-17!165;CL:0000837!1.20e-17!165;CL:0000624!1.83e-11!6;CL:0000898!5.94e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.43e-41;18!CL:0000789;1.43e-41;18!CL:0002419;1.43e-41;18!CL:0000236;5.19e-38;13!CL:0000084;4.96e-29;25!CL:0000542;7.73e-29;53!CL:0000625;1.41e-28;11!CL:0000945;1.67e-19;24!CL:0000624;3.27e-17;6!CL:0000898;2.03e-13;3!CL:0000815;2.17e-09;2!CL:0000792;2.17e-09;2!CL:0002677;2.17e-09;2!CL:0002087;1.51e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.68e-47,53;CL:0000051,1.68e-47,53;CL:0000838,8.23e-45,52;CL:0000791,4.23e-42,18;CL:0000789,4.23e-42,18;CL:0002420,4.23e-42,18;CL:0002419,4.23e-42,18;CL:0000790,4.23e-42,18;CL:0000236,2.24e-35,14;CL:0000084,2.10e-29,25;CL:0000827,2.10e-29,25;CL:0000625,6.04e-29,11;CL:0000738,2.11e-20,136;CL:0002087,7.15e-20,115;CL:0000945,1.21e-19,24;CL:0000826,1.21e-19,24;CL:0002031,8.20e-19,120;CL:0000624,2.11e-17,6;CL:0000037,3.37e-15,168;CL:0002032,7.99e-15,161;CL:0000837,7.99e-15,161;CL:0000988,4.48e-14,177;CL:0000898,1.23e-13,3;CL:0000815,1.23e-09,2;CL:0000792,1.23e-09,2;CL:0002677,1.23e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.43e-41;18!CL:0000051;7.73e-29;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.07e-09!7;UBERON:0007023!1.14e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;2.22e-13;5!UBERON:0005057;2.22e-13;5!UBERON:0002370;5.10e-09;2!UBERON:0005058;5.10e-09;2!UBERON:0009113;5.10e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.41e-14,7;UBERON:0005057,1.41e-14,7;UBERON:0002370,6.81e-10,4;UBERON:0005058,6.81e-10,4;UBERON:0009113,6.81e-10,4;UBERON:0003295,6.81e-10,4;UBERON:0005562,6.81e-10,4;UBERON:0003351,9.88e-07,6 | |||
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| ||
|short_description=p5@C12orf42 | |short_description=p5@C12orf42 | ||
}} | }} |
Latest revision as of 22:43, 15 September 2015
Short description: | p5@C12orf42 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_C12orf42_5end |
Coexpression cluster: | C272_CD19_CD4_CD8_Whole_Peripheral_lymph_tonsil |
Association with transcript: | -121bp_to_ENST00000552977_5end |
EntrezGene: | C12orf42 |
HGNC: | 24729 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.68e-47 | 53 |
common lymphoid progenitor | 1.68e-47 | 53 |
lymphoid lineage restricted progenitor cell | 8.23e-45 | 52 |
mature alpha-beta T cell | 4.23e-42 | 18 |
alpha-beta T cell | 4.23e-42 | 18 |
immature T cell | 4.23e-42 | 18 |
mature T cell | 4.23e-42 | 18 |
immature alpha-beta T cell | 4.23e-42 | 18 |
B cell | 2.24e-35 | 14 |
T cell | 2.10e-29 | 25 |
pro-T cell | 2.10e-29 | 25 |
CD8-positive, alpha-beta T cell | 6.04e-29 | 11 |
leukocyte | 2.11e-20 | 136 |
nongranular leukocyte | 7.15e-20 | 115 |
lymphocyte of B lineage | 1.21e-19 | 24 |
pro-B cell | 1.21e-19 | 24 |
hematopoietic lineage restricted progenitor cell | 8.20e-19 | 120 |
CD4-positive, alpha-beta T cell | 2.11e-17 | 6 |
hematopoietic stem cell | 3.37e-15 | 168 |
hematopoietic oligopotent progenitor cell | 7.99e-15 | 161 |
hematopoietic multipotent progenitor cell | 7.99e-15 | 161 |
hematopoietic cell | 4.48e-14 | 177 |
naive T cell | 1.23e-13 | 3 |
regulatory T cell | 1.23e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.23e-09 | 2 |
naive regulatory T cell | 1.23e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.41e-14 | 7 |
immune organ | 1.41e-14 | 7 |
thymus | 6.81e-10 | 4 |
hemolymphoid system gland | 6.81e-10 | 4 |
thymic region | 6.81e-10 | 4 |
pharyngeal gland | 6.81e-10 | 4 |
thymus primordium | 6.81e-10 | 4 |
pharyngeal epithelium | 9.88e-07 | 6 |