FFCP PHASE1:Hg19::chr17:48262913..48262927,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:48262913..48262927,- to FFCP PHASE1:Hg19::chr17:48262913..48262927,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=-12bp_to_,12bp_to_J00113,M32790,M32798_5end | |||
|cluster_id=chr17:48262913..48262927,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_9_at_COL1A1_5end | |||
|id=chr17:48262913..48262927,- | |||
|ontology_enrichment_celltype=CL:0000055!1.34e-40!180;CL:0000057!3.81e-26!75;CL:0000183!3.23e-14!59;CL:0000680!9.60e-14!57;CL:0000056!9.60e-14!57;CL:0000355!9.60e-14!57;CL:0000187!3.23e-13!54;CL:0000393!2.11e-12!60;CL:0000211!2.11e-12!60;CL:0002620!5.98e-10!23;CL:0000192!9.09e-10!42;CL:0000514!9.09e-10!42;CL:0000048!1.17e-09!430;CL:0000499!2.33e-09!27;CL:0000723!4.08e-09!436;CL:0000034!5.87e-09!444;CL:0000144!1.12e-08!625;CL:0002371!2.63e-08!591;CL:0002334!4.48e-08!12;CL:0000327!8.01e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.35e-11;55!CL:0000057;3.44e-10;73!CL:0002320;4.85e-10;188!CL:0000723;9.13e-10;61!CL:0000048;1.16e-09;58!CL:0002334;2.58e-09;12!CL:0002620;2.77e-09;23!CL:0000499;1.64e-08;28!CL:0000187;8.64e-08;55!CL:0000327;2.25e-07;15!CL:0000034;4.02e-07;69!CL:0002570;7.02e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.56e-28,76;CL:0000048,5.20e-15,427;CL:0000723,4.93e-14,433;CL:0000034,4.50e-13,441;CL:0000680,7.21e-13,58;CL:0000056,7.21e-13,58;CL:0000355,7.21e-13,58;CL:0000187,3.07e-12,55;CL:0000393,1.09e-09,61;CL:0000211,1.09e-09,61;CL:0002620,1.98e-09,23;CL:0002334,2.65e-09,12;CL:0002320,6.25e-09,361;CL:0000499,1.53e-08,28;CL:0000192,2.20e-08,43;CL:0000514,2.20e-08,43;CL:0000134,2.14e-07,354;CL:0000327,2.43e-07,15;CL:0002570,6.94e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;1.21e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.17e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.08e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.02e-16!83;UBERON:0002329!9.02e-16!83;UBERON:0003077!9.02e-16!83;UBERON:0003059!9.02e-16!83;UBERON:0007282!9.02e-16!83;UBERON:0009618!9.02e-16!83;UBERON:0007285!9.02e-16!83;UBERON:0004290!4.34e-14!70;UBERON:0002385!7.51e-14!63;UBERON:0001015!7.51e-14!63;UBERON:0000383!7.51e-14!63;UBERON:0001134!1.10e-13!61;UBERON:0002036!1.10e-13!61;UBERON:0003082!1.10e-13!61;UBERON:0000486!5.45e-12!82;UBERON:0005256!7.49e-12!143;UBERON:0000475!1.01e-08!365;UBERON:0003102!1.46e-08!95;UBERON:0002100!1.67e-08!216;UBERON:0002199!2.08e-08!45;UBERON:0002416!2.08e-08!45;UBERON:0001013!2.62e-07!14;UBERON:0004872!6.43e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.09e-09;198!UBERON:0001013;1.22e-07;14!UBERON:0002385;3.90e-07;31!UBERON:0001015;3.90e-07;31!UBERON:0000383;3.90e-07;31!UBERON:0002204;5.16e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.87e-13,62;UBERON:0002036,3.87e-13,62;UBERON:0003082,3.87e-13,62;UBERON:0002385,6.46e-13,64;UBERON:0001015,6.46e-13,64;UBERON:0000383,6.46e-13,64;UBERON:0007524,1.26e-12,73;UBERON:0002329,1.83e-12,71;UBERON:0003059,1.83e-12,71;UBERON:0007282,1.83e-12,71;UBERON:0004290,1.83e-12,71;UBERON:0009618,1.83e-12,71;UBERON:0007503,3.26e-12,78;UBERON:0003077,4.64e-12,72;UBERON:0007285,4.64e-12,72;UBERON:0003104,7.01e-10,160;UBERON:0009142,7.01e-10,160;UBERON:0000486,7.34e-10,83;UBERON:0005256,1.80e-09,122;UBERON:0002384,2.61e-09,371;UBERON:0002199,3.60e-09,46;UBERON:0002416,3.60e-09,46;UBERON:0001013,1.16e-07,14;UBERON:0003102,2.63e-07,99;UBERON:0002097,3.67e-07,41 | |||
|phase1_expression=15.0793054794562,50.955924686054,31.4328321134016,26.0190575718139,32.1811987987647,12.2127393374052,81.0559610138594,4.42203911398782,1.56711376919903,1.72013755551056,0,2.40285509343189,17.6723875413064,6.06455129504228,3.97676850873499,5.3786011716142,6.62963980826375,5.84248072309899,6.34312638427659,7.1410213684537,11.6280394009224,14.418917187992,0.85870796139317,0.958120975510189,2.76193807108566,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.9426179682566,15.4261197731836,14.3206069264754,44.8184548956862,10.0267582127178,36.2116297402059,31.0161519349929,17.0322204605923,2.07976597760949,8.64744650103999,5.79709585574632,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0.436094052142534,73.5518488509071,19.880990331339,7.41491412554025,165.217893551317,34.0481646910423,12.8955848032731,9.60740961567345,98.9136869152811,3.11211035399766,3.23305612967251,2.61539044981534,24.9739755614137,17.2852777344,1.40592859100278,1.5608003841516,0.570471821544449,1.94283284717341,0.704606991862589,0.809364721840658,1.40450806702248,3.26646674007829,3.93069815397658,2.6864703105699,34.4520828611796,58.602262239018,9.10161361938026,48.8660336435042,1.85169725349473,4.62938523526267,0.831192346452549,18.876037697876,29.1163406009069,13.0707111248739,8.84771028648164,111.93913266985,36.0911987103379,29.4585342611791,66.0200411385685,29.3699708329551,82.9602538946926,22.706256472454,36.2869114318722,36.3440029251271,63.1084435610286,20.4350774985905,21.9838637273584,92.6575036468363,14.1052937518696,10.8518779078712,0,0.272746120590835,0,0.487894824518382,0.265059536642971,1.04574548582567,0.932949495138334,0.252320850875628,0,1.56449532329816,22.513432836751,0,11.1448302727675,8.66255378003503,0.118306800039844,0,0.241011029883482,0.330881918197182,0.217879444092406,0,0.134831308160164,0,0,0,21.0362660705169,24.694440679884,55.8633103265059,0,0,2.36315962672562,0,0,7.20584803253807,0.548751427043128,0,0,0.277765335475589,2.6064664424826,3.11980435583874,8.6598805215164,1.507095264676,5.63561732331944,0,0,0,0,0,0,0,0,0,1.6798212819886,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0.063497894292169,0,0,1.71072446022705,2.05654985406647,0,0,8.29770024155669,9.59112151433216,13.7142594485177,13.5735301545667,14.3062578340753,38.03862386502,21.8069255599594,24.9617848587279,5.65856223376713,4.25547396069835,5.06202140130589,66.9137010320131,103.098105024374,27.1669311137654,12.7037111874557,36.6053707204822,10.2953743481346,1.50719688529793,0,3.99891964728228,0,0,0,39.7777260116027,103.375742250703,1.42636905040718,3.32997005335432,5.34238438630997,1.43248770591916,0,0,0,0,0.76228387266739,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,14.6002875145776,15.50528615285,3.7977103317963,105.857168519181,212.865783635014,86.7363282686641,28.8167880882074,6.92176029373754,9.09630016223939,15.5209606938757,38.5250847150553,5.8998133933345,11.9030551821274,23.3003377380661,49.7557964525741,0,0,0,1.21251028578504,16.6435439510497,35.6820546129023,36.2237399415414,24.4004537528019,76.6202057802291,52.9214686426045,14.3278029738677,126.431182018875,8.90508398669946,25.2903897836355,43.1474992510899,12.0726919340299,28.5589936050992,17.7801879043738,0.241718899183244,0.40101294060657,0,18.7147550508309,30.0450427211083,26.6182562367631,0,0.15403067420883,0,1.46139224653261,0.527758144464379,0,0,2.15915916102139,1.54227252690289,4.33514300070165,10.5354852509519,0,0,1.34324852833307,0,0,0,0.984043937099117,0.325378394664303,0.515205058238611,6.50143200210238,1.56768049849117,2.87132768998086,2.60024098414608,19.2820715812991,6.67027956215642,1.84858340537573,2.45605879561807,2.06754858726796,10.204923262486,11.4563188192241,2.81247870473133,61.6101686675422,0.991709492165869,1.15314040419064,0.127612712494584,0.4046311234222,28.8204240564317,285.21998622856,0.6970372701606,4.62050370264133,1.59691809095107,0.869932992075073,0.9266210955196,0.858749320451947,2.232950216158,3.79655309662471,14.2972645442869,9.46821827851935,10.698474700848,0.95460974377781,4.70969184119538,8.63387796399911,18.6685180220517,9.42499218765492,0.404364963146632,0,0,15.1166459117773,11.4545340126704,3.16950440270266,16.9259890145902,61.0871466040039,4.52032466480971,2.75682671773062,11.2784625791007,0.438450885253763,9.260408548267,8.52663177660623,2.63783490051515,4.64735247149625,4.22543403798362,10.7558514153039,16.8005860132437,3.5667105148125,2.48332744849418,22.1663017062547,38.8567973692684,4.9331512589543,13.9973888097993,0,0.670302275535787,0,0.753150406214233,0.86101074534246,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|short_description=p9@COL1A1 | |||
}} | }} |
Latest revision as of 23:35, 15 September 2015
Short description: | p9@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -12bp_to_, 12bp_to_J00113, M32790, M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.56e-28 | 76 |
multi fate stem cell | 5.20e-15 | 427 |
somatic stem cell | 4.93e-14 | 433 |
stem cell | 4.50e-13 | 441 |
muscle precursor cell | 7.21e-13 | 58 |
myoblast | 7.21e-13 | 58 |
multi-potent skeletal muscle stem cell | 7.21e-13 | 58 |
muscle cell | 3.07e-12 | 55 |
electrically responsive cell | 1.09e-09 | 61 |
electrically active cell | 1.09e-09 | 61 |
skin fibroblast | 1.98e-09 | 23 |
preadipocyte | 2.65e-09 | 12 |
connective tissue cell | 6.25e-09 | 361 |
stromal cell | 1.53e-08 | 28 |
smooth muscle cell | 2.20e-08 | 43 |
smooth muscle myoblast | 2.20e-08 | 43 |
mesenchymal cell | 2.14e-07 | 354 |
extracellular matrix secreting cell | 2.43e-07 | 15 |
mesenchymal stem cell of adipose | 6.94e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 3.87e-13 | 62 |
striated muscle tissue | 3.87e-13 | 62 |
myotome | 3.87e-13 | 62 |
muscle tissue | 6.46e-13 | 64 |
musculature | 6.46e-13 | 64 |
musculature of body | 6.46e-13 | 64 |
dense mesenchyme tissue | 1.26e-12 | 73 |
somite | 1.83e-12 | 71 |
presomitic mesoderm | 1.83e-12 | 71 |
presumptive segmental plate | 1.83e-12 | 71 |
dermomyotome | 1.83e-12 | 71 |
trunk paraxial mesoderm | 1.83e-12 | 71 |
epithelial vesicle | 3.26e-12 | 78 |
paraxial mesoderm | 4.64e-12 | 72 |
presumptive paraxial mesoderm | 4.64e-12 | 72 |
mesenchyme | 7.01e-10 | 160 |
entire embryonic mesenchyme | 7.01e-10 | 160 |
multilaminar epithelium | 7.34e-10 | 83 |
trunk mesenchyme | 1.80e-09 | 122 |
connective tissue | 2.61e-09 | 371 |
integument | 3.60e-09 | 46 |
integumental system | 3.60e-09 | 46 |
adipose tissue | 1.16e-07 | 14 |
surface structure | 2.63e-07 | 99 |
skin of body | 3.67e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.08e-07 | 14 |