FFCP PHASE1:Hg19::chr17:48270020..48270059,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:48270020..48270059,-
|short_description=p41@COL1A1
|description=CAGE_peak_41_at_COL1A1_5end
|association_with_transcript=-220bp_to_ENST00000504289_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-220bp_to_ENST00000504289_5end | |||
|cluster_id=chr17:48270020..48270059,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_41_at_COL1A1_5end | |||
|id=chr17:48270020..48270059,- | |||
|ontology_enrichment_celltype=CL:0000055!6.81e-39!180;CL:0000057!1.60e-24!75;CL:0000183!8.85e-18!59;CL:0000680!3.47e-17!57;CL:0000056!3.47e-17!57;CL:0000355!3.47e-17!57;CL:0000187!2.44e-16!54;CL:0000192!3.98e-14!42;CL:0000514!3.98e-14!42;CL:0000393!1.64e-13!60;CL:0000211!1.64e-13!60;CL:0000048!2.65e-13!430;CL:0000723!1.37e-12!436;CL:0000034!2.38e-11!444;CL:0000359!2.22e-09!32;CL:0002334!3.75e-08!12;CL:0000327!6.41e-08!14;CL:0002371!1.16e-07!591;CL:0000499!1.81e-07!27;CL:0000144!2.47e-07!625;CL:0000222!2.99e-07!119;CL:0002620!3.45e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.36e-09;12!CL:0000057;8.14e-09;73!CL:0000499;1.07e-08;28!CL:0000327;1.29e-08;15!CL:0000134;2.63e-08;55!CL:0002320;2.78e-08;188!CL:0002570;1.10e-07;8!CL:0000723;1.46e-07;61!CL:0000048;1.57e-07;58!CL:0000187;7.67e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.02e-23,76;CL:0000048,3.01e-16,427;CL:0000723,1.87e-15,433;CL:0000034,1.94e-14,441;CL:0000680,7.46e-11,58;CL:0000056,7.46e-11,58;CL:0000355,7.46e-11,58;CL:0000187,1.63e-10,55;CL:0002320,1.35e-09,361;CL:0002334,2.63e-09,12;CL:0000134,1.14e-08,354;CL:0000499,1.15e-08,28;CL:0000393,1.42e-08,61;CL:0000211,1.42e-08,61;CL:0000327,1.71e-08,15;CL:0000192,2.67e-08,43;CL:0000514,2.67e-08,43;CL:0002570,6.46e-08,8;CL:0000219,5.51e-07,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!8.89e-19!83;UBERON:0002329!8.89e-19!83;UBERON:0003077!8.89e-19!83;UBERON:0003059!8.89e-19!83;UBERON:0007282!8.89e-19!83;UBERON:0009618!8.89e-19!83;UBERON:0007285!8.89e-19!83;UBERON:0001134!5.89e-18!61;UBERON:0002036!5.89e-18!61;UBERON:0003082!5.89e-18!61;UBERON:0004290!2.20e-17!70;UBERON:0002385!2.28e-17!63;UBERON:0001015!2.28e-17!63;UBERON:0000383!2.28e-17!63;UBERON:0000486!1.30e-14!82;UBERON:0005256!4.07e-12!143;UBERON:0004872!3.46e-09!84;UBERON:0002100!1.47e-08!216;UBERON:0000490!3.60e-08!138;UBERON:0002049!2.80e-07!79;UBERON:0007798!2.80e-07!79;UBERON:0000475!6.22e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.26e-08;198!UBERON:0004457;4.04e-08;9!UBERON:0000042;4.04e-08;9!UBERON:0003688;6.47e-08;6!UBERON:0002358;6.47e-08;6!UBERON:0003684;6.47e-08;6!UBERON:0001178;6.47e-08;6!UBERON:0001013;2.13e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.41e-11,62;UBERON:0002036,1.41e-11,62;UBERON:0003082,1.41e-11,62;UBERON:0002385,7.02e-11,64;UBERON:0001015,7.02e-11,64;UBERON:0000383,7.02e-11,64;UBERON:0007524,1.87e-10,73;UBERON:0002329,4.09e-10,71;UBERON:0003059,4.09e-10,71;UBERON:0007282,4.09e-10,71;UBERON:0004290,4.09e-10,71;UBERON:0009618,4.09e-10,71;UBERON:0002384,7.73e-10,371;UBERON:0003077,7.97e-10,72;UBERON:0007285,7.97e-10,72;UBERON:0007503,1.82e-09,78;UBERON:0000486,1.89e-08,83;UBERON:0003688,6.29e-08,6;UBERON:0002358,6.29e-08,6;UBERON:0003684,6.29e-08,6;UBERON:0001178,6.29e-08,6;UBERON:0001013,1.38e-07,14;UBERON:0005256,5.17e-07,122 | |||
|phase1_expression=5.99538651592837,6.42301571672949,7.47058341708647,8.00586386825043,13.4088328328186,2.61701557230111,22.796989035148,0,0,0,0,0.436882744260345,2.90143676051299,0.74259811776028,0.662794751455832,1.34465029290355,0.602694528023977,0.730310090387373,0.975865597581014,2.58554221961255,2.65200898617529,2.5076377718247,0,0.547497700291537,0.376627918784408,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,14.6284119788377,0,2.42938867502708,5.78302643815306,8.52274448081012,4.05570253090306,3.1811437882044,12.6525066278685,0.189069634328136,2.66075276955077,1.40535657109002,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,14.9091585508596,3.41902381494365,1.32409180813219,20.078563452417,7.4480360261655,2.80338800071154,2.1349799145941,6.90669135568048,1.24484414159907,1.48181739276657,0.490385709340376,5.60022482286246,0.576175924479999,1.17160715916898,0,0,0.298897361103602,0.352303495931295,0.161872944368132,0.561803226808994,0.204154171254893,0.245668634623536,0.826606249406124,17.8200428592308,13.5996811103206,6.37112953356618,9.3420358436111,0.168336113954066,0.250237039743928,0.277064115484183,3.07284334616587,3.37136575378922,9.91571188783539,1.24775401476023,2.33206526395521,5.97960688691989,4.4505699243508,5.40163972951924,2.26715564324566,2.06112432036503,2.23340227597908,4.38818463827292,4.38466523225394,2.52433774244115,4.32634523618807,6.14255015911485,3.19508633264953,1.81353776809752,1.69560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,1.92972281457866,0,1.85747171212792,1.44375896333917,0.118306800039844,0,0,0,0,0,0,0,0,0,2.80483547606892,10.289350283285,19.1111324801205,0,0,0,0,0,1.02940686179115,0.109750285408626,0,0,0,0.325808305310325,3.11980435583874,1.44331342025273,0.115930404975077,0.469634776943287,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,1.00917975910825,1.74384027533312,0.8800594298514,1.68053230485111,7.15312891703765,6.762422020448,6.11657668145202,2.08014873822732,0.771622122786426,4.25547396069835,2.66422179016099,3.71742783511184,9.76718889704597,4.11620168390384,1.95441710576241,2.84313558994037,0.791951872933429,0,0.871533458600294,0.699810938274399,0,0,0,6.23024624278115,16.0806710167759,0,1.30303176000821,1.02738161275192,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,1.50051156317903,1.62759014219841,31.4036000911519,20.5193337116736,14.8240270131899,4.68565659970853,5.71797589482666,6.82222512167955,5.17365356462525,2.65690239414175,4.42486004500088,0.955719759148911,9.39845555821155,8.23544217146054,0,0,0,0.303127571446259,4.99306318531491,4.23346410661552,9.6762045049323,4.75732117192994,19.3655465158821,15.7611153584512,4.60536524160033,18.9807626949457,4.45254199334973,1.23367755042124,4.43904313282818,0.821271560138091,1.55776328755086,1.04589340613963,0,0,0,2.75554675595056,2.91345868810747,3.67148361886388,0,0,0,0,0.105551628892876,0,0,0,0,1.08378575017541,2.50844886927427,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0.732555718546747,0.577566499444116,0.574265537996172,0,8.03419649220798,1.16004861950546,0.154048617114644,1.07452572308291,1.10269257987624,0.644521469209642,1.88521702088497,1.02271952899321,8.72513949338026,0,0,0,0.2023155617111,2.78907329578371,10.7036197922418,0.6970372701606,1.54016790088044,0.532306030317022,0,0.74129687641568,0.715624433709956,1.116475108079,1.2655176988749,5.90953601163857,2.303080121802,0,0.95460974377781,0.78494864019923,1.79872457583315,3.84351841630477,2.00281083987667,0.404364963146632,1.58510321173008,2.52755073743389,4.8763373908959,0.731140468893853,1.05650146756755,4.36799716505554,6.6460553018245,3.39024349860728,3.30819206127675,0,1.31535265576129,3.47265320560013,3.27947376023316,1.01455188481352,1.54911749049875,0.845086807596724,0.717056761020258,1.76848273823618,3.21003946333125,1.41904425628239,4.01104507065562,3.29294892959902,2.27683904259429,1.04980416073495,0,0,0,0.564862804660675,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.568272293612826,0,0.296964680832639,0,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0,4.66559381492711,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.5393585306253,0.227884111694002,0,0.0897576444097721,0,0.31900115973192,2.1983422416447,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,12.8412423567806,0,0,0,0,0,4.83962864194656,0.30607276163049,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0.0730893170861856,0,0.193978032976839,0.0882561266915003,3.84167259326905,0,0,0,0,0.160317640503067,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,1.28929632425987,0,1.1171296050890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| ||
|short_description=p41@COL1A1 | |||
}} | }} |
Latest revision as of 00:39, 16 September 2015
Short description: | p41@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_41_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -220bp_to_ENST00000504289_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.02e-23 | 76 |
multi fate stem cell | 3.01e-16 | 427 |
somatic stem cell | 1.87e-15 | 433 |
stem cell | 1.94e-14 | 441 |
muscle precursor cell | 7.46e-11 | 58 |
myoblast | 7.46e-11 | 58 |
multi-potent skeletal muscle stem cell | 7.46e-11 | 58 |
muscle cell | 1.63e-10 | 55 |
connective tissue cell | 1.35e-09 | 361 |
preadipocyte | 2.63e-09 | 12 |
mesenchymal cell | 1.14e-08 | 354 |
stromal cell | 1.15e-08 | 28 |
electrically responsive cell | 1.42e-08 | 61 |
electrically active cell | 1.42e-08 | 61 |
extracellular matrix secreting cell | 1.71e-08 | 15 |
smooth muscle cell | 2.67e-08 | 43 |
smooth muscle myoblast | 2.67e-08 | 43 |
mesenchymal stem cell of adipose | 6.46e-08 | 8 |
motile cell | 5.51e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.41e-11 | 62 |
striated muscle tissue | 1.41e-11 | 62 |
myotome | 1.41e-11 | 62 |
muscle tissue | 7.02e-11 | 64 |
musculature | 7.02e-11 | 64 |
musculature of body | 7.02e-11 | 64 |
dense mesenchyme tissue | 1.87e-10 | 73 |
somite | 4.09e-10 | 71 |
presomitic mesoderm | 4.09e-10 | 71 |
presumptive segmental plate | 4.09e-10 | 71 |
dermomyotome | 4.09e-10 | 71 |
trunk paraxial mesoderm | 4.09e-10 | 71 |
connective tissue | 7.73e-10 | 371 |
paraxial mesoderm | 7.97e-10 | 72 |
presumptive paraxial mesoderm | 7.97e-10 | 72 |
epithelial vesicle | 1.82e-09 | 78 |
multilaminar epithelium | 1.89e-08 | 83 |
omentum | 6.29e-08 | 6 |
peritoneum | 6.29e-08 | 6 |
abdominal cavity | 6.29e-08 | 6 |
visceral peritoneum | 6.29e-08 | 6 |
adipose tissue | 1.38e-07 | 14 |
trunk mesenchyme | 5.17e-07 | 122 |