FFCP PHASE1:Hg19::chr17:48277133..48277317,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:48277133..48277317,- to FFCP PHASE1:Hg19::chr17:48277133..48277317,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=234bp_to_ENST00000507689_5end | |||
|cluster_id=chr17:48277133..48277317,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_4_at_COL1A1_5end | |||
|id=chr17:48277133..48277317,- | |||
|ontology_enrichment_celltype=CL:0000055!3.20e-34!180;CL:0000057!8.36e-21!75;CL:0000680!5.43e-15!57;CL:0000056!5.43e-15!57;CL:0000355!5.43e-15!57;CL:0000183!6.18e-15!59;CL:0000187!2.09e-14!54;CL:0000393!1.88e-12!60;CL:0000211!1.88e-12!60;CL:0000192!3.71e-11!42;CL:0000514!3.71e-11!42;CL:0000359!4.62e-08!32;CL:0002620!2.99e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000187;3.48e-09;55!CL:0000057;4.29e-09;73!CL:0000192;6.61e-09;43!CL:0000134;1.49e-08;55!CL:0002320;3.79e-08;188!CL:0000359;3.83e-08;32!CL:0000723;1.15e-07;61!CL:0002620;1.23e-07;23!CL:0000048;1.26e-07;58!CL:0000393;1.38e-07;61!CL:0000211;1.38e-07;61!CL:0002334;5.97e-07;12!CL:0002494;9.69e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.77e-22,76;CL:0000680,2.61e-16,58;CL:0000056,2.61e-16,58;CL:0000355,2.61e-16,58;CL:0000187,1.11e-15,55;CL:0000393,3.52e-13,61;CL:0000211,3.52e-13,61;CL:0000192,3.40e-12,43;CL:0000514,3.40e-12,43;CL:0000359,1.62e-08,32;CL:0000048,1.81e-08,427;CL:0000723,1.13e-07,433;CL:0002620,1.19e-07,23;CL:0000034,2.31e-07,441;CL:0002334,6.16e-07,12;CL:0002494,9.85e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;5.16e-09;58!CL:0000514;6.61e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.46e-17!83;UBERON:0002329!1.46e-17!83;UBERON:0003077!1.46e-17!83;UBERON:0003059!1.46e-17!83;UBERON:0007282!1.46e-17!83;UBERON:0009618!1.46e-17!83;UBERON:0007285!1.46e-17!83;UBERON:0004290!5.16e-16!70;UBERON:0001134!2.30e-15!61;UBERON:0002036!2.30e-15!61;UBERON:0003082!2.30e-15!61;UBERON:0002385!4.20e-15!63;UBERON:0001015!4.20e-15!63;UBERON:0000383!4.20e-15!63;UBERON:0000486!1.62e-14!82;UBERON:0005256!1.75e-13!143;UBERON:0002100!1.74e-12!216;UBERON:0003104!7.68e-11!238;UBERON:0009142!7.68e-11!238;UBERON:0000475!6.36e-09!365;UBERON:0003102!2.87e-08!95;UBERON:0000481!3.64e-08!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.32e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.98e-17,78;UBERON:0002329,7.59e-17,71;UBERON:0003059,7.59e-17,71;UBERON:0007282,7.59e-17,71;UBERON:0004290,7.59e-17,71;UBERON:0009618,7.59e-17,71;UBERON:0007524,8.71e-17,73;UBERON:0003077,3.33e-16,72;UBERON:0007285,3.33e-16,72;UBERON:0001134,3.94e-16,62;UBERON:0002036,3.94e-16,62;UBERON:0003082,3.94e-16,62;UBERON:0002385,7.32e-16,64;UBERON:0001015,7.32e-16,64;UBERON:0000383,7.32e-16,64;UBERON:0000486,2.00e-14,83;UBERON:0005256,2.51e-14,122;UBERON:0003104,8.91e-14,160;UBERON:0009142,8.91e-14,160;UBERON:0002100,1.08e-09,199;UBERON:0000490,6.55e-07,148 | |||
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| ||
|short_description=p4@COL1A1 | |||
}} | }} |
Latest revision as of 01:27, 16 September 2015
Short description: | p4@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 234bp_to_ENST00000507689_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.77e-22 | 76 |
muscle precursor cell | 2.61e-16 | 58 |
myoblast | 2.61e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.61e-16 | 58 |
muscle cell | 1.11e-15 | 55 |
electrically responsive cell | 3.52e-13 | 61 |
electrically active cell | 3.52e-13 | 61 |
smooth muscle cell | 3.40e-12 | 43 |
smooth muscle myoblast | 3.40e-12 | 43 |
vascular associated smooth muscle cell | 1.62e-08 | 32 |
multi fate stem cell | 1.81e-08 | 427 |
somatic stem cell | 1.13e-07 | 433 |
skin fibroblast | 1.19e-07 | 23 |
stem cell | 2.31e-07 | 441 |
preadipocyte | 6.16e-07 | 12 |
cardiocyte | 9.85e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.98e-17 | 78 |
somite | 7.59e-17 | 71 |
presomitic mesoderm | 7.59e-17 | 71 |
presumptive segmental plate | 7.59e-17 | 71 |
dermomyotome | 7.59e-17 | 71 |
trunk paraxial mesoderm | 7.59e-17 | 71 |
dense mesenchyme tissue | 8.71e-17 | 73 |
paraxial mesoderm | 3.33e-16 | 72 |
presumptive paraxial mesoderm | 3.33e-16 | 72 |
skeletal muscle tissue | 3.94e-16 | 62 |
striated muscle tissue | 3.94e-16 | 62 |
myotome | 3.94e-16 | 62 |
muscle tissue | 7.32e-16 | 64 |
musculature | 7.32e-16 | 64 |
musculature of body | 7.32e-16 | 64 |
multilaminar epithelium | 2.00e-14 | 83 |
trunk mesenchyme | 2.51e-14 | 122 |
mesenchyme | 8.91e-14 | 160 |
entire embryonic mesenchyme | 8.91e-14 | 160 |
trunk | 1.08e-09 | 199 |
unilaminar epithelium | 6.55e-07 | 148 |