FFCP PHASE1:Hg19::chr12:108523133..108523157,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9671 | |EntrezGene=9671 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29117 | |HGNC=29117 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-90bp_to_ENST00000547525_5end | |association_with_transcript=-90bp_to_ENST00000547525_5end | ||
|cluster_id=chr12:108523133..108523157,+ | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_8_at_WSCD2_5end | |description=CAGE_peak_8_at_WSCD2_5end | ||
|id=chr12:108523133..108523157,+ | |id=chr12:108523133..108523157,+ | ||
|ontology_enrichment_celltype=CL:0002274!2.29e-07!5;CL:0000457!2.29e-07!5;CL:0002191!2.29e-07!5;CL:0000097!2.29e-07!5;CL:0000831!2.29e-07!5;CL:0002028!2.29e-07!5 | |ontology_enrichment_celltype=CL:0002274!2.29e-07!5;CL:0000457!2.29e-07!5;CL:0002191!2.29e-07!5;CL:0000097!2.29e-07!5;CL:0000831!2.29e-07!5;CL:0002028!2.29e-07!5 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.40e-55;3!UBERON:0003056;2.47e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.49e-40!115;UBERON:0001049!1.98e-36!57;UBERON:0005068!1.98e-36!57;UBERON:0006241!1.98e-36!57;UBERON:0007135!1.98e-36!57;UBERON:0001017!2.35e-32!82;UBERON:0005743!2.45e-32!86;UBERON:0002616!3.96e-30!59;UBERON:0000073!3.37e-28!94;UBERON:0001016!3.37e-28!94;UBERON:0000955!7.58e-28!69;UBERON:0006238!7.58e-28!69;UBERON:0002780!3.34e-27!41;UBERON:0001890!3.34e-27!41;UBERON:0006240!3.34e-27!41;UBERON:0002346!3.61e-27!90;UBERON:0003075!4.29e-27!86;UBERON:0007284!4.29e-27!86;UBERON:0003080!2.15e-26!42;UBERON:0001893!4.09e-26!34;UBERON:0001869!2.19e-25!32;UBERON:0002619!3.80e-25!22;UBERON:0002791!1.98e-24!33;UBERON:0002020!2.04e-23!34;UBERON:0003528!2.04e-23!34;UBERON:0000956!1.15e-21!25;UBERON:0000203!1.15e-21!25;UBERON:0001950!2.93e-21!20;UBERON:0003056!3.51e-19!61;UBERON:0000153!1.41e-17!129;UBERON:0007811!1.41e-17!129;UBERON:0000033!1.33e-16!123;UBERON:0000924!2.00e-14!173;UBERON:0006601!2.00e-14!173;UBERON:0004121!4.60e-14!169;UBERON:0003076!5.12e-11!15;UBERON:0003057!5.12e-11!15;UBERON:0001871!7.97e-10!7;UBERON:0000200!3.90e-09!6;UBERON:0004733!1.67e-08!12;UBERON:0002028!1.67e-08!12;UBERON:0007277!1.67e-08!12;UBERON:0000349!6.25e-08!5;UBERON:0004732!9.34e-08!13;UBERON:0001872!2.45e-07!5;UBERON:0002771!3.16e-07!3;UBERON:0000025!5.51e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.10e-28;6!UBERON:0002680;5.33e-19;9!UBERON:0001895;5.33e-19;9!UBERON:0004733;2.00e-14;12!UBERON:0002028;2.00e-14;12!UBERON:0004732;2.29e-13;13!UBERON:0000341;2.27e-10;2!UBERON:0001954;3.13e-10;2!UBERON:0003022;3.13e-10;2!UBERON:0002421;3.13e-10;2!UBERON:0002600;3.13e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,4.10e-28,6;UBERON:0006215,4.10e-28,6;UBERON:0002680,5.33e-19,9;UBERON:0001895,5.33e-19,9;UBERON:0010092,5.33e-19,9;UBERON:0004733,2.00e-14,12;UBERON:0002028,2.00e-14,12;UBERON:0007277,2.00e-14,12;UBERON:0004732,2.29e-13,13;UBERON:0003076,1.14e-11,15;UBERON:0003057,1.14e-11,15;UBERON:0000341,2.27e-10,2;UBERON:0001954,2.72e-10,2;UBERON:0003022,2.72e-10,2;UBERON:0002421,2.72e-10,2;UBERON:0002600,2.72e-10,2;UBERON:0000073,1.72e-08,53;UBERON:0002616,1.72e-08,53;UBERON:0001049,4.80e-08,56;UBERON:0005068,4.80e-08,56;UBERON:0006241,4.80e-08,56;UBERON:0007135,4.80e-08,56;UBERON:0003075,1.02e-07,82;UBERON:0007284,1.02e-07,82;UBERON:0002346,2.36e-07,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.132529768321485,0.116193942869518,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,1.03664057770386,0.432359860250884,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.41254749960294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0.361789315876224,10.6807215421958,11.7214015527098,14.1862857097703,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0,0,0,0,0,0,0.471807930864739,0,0.468528891450678,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.969890164884194,0,0,0,0,0.696418755514666,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,1.59045937961861,0.681017030557878,0.160753148465019,0.412618309791701,0.415440338029185,0,0.77380195455795,0.850493793212345,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.610131324509816,0.3755727921195,0,0.443716206147409,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,1.41696576325585,0.638535436228605,0,0,0.760729777106397,0.484426936895553,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0.781078098613847,0.413373593002368,0.253663240775627,0,0,0.496211178389294,0.879356221798103,0,0,0.336283722218824,0,0,0,0,0,0.135939465953663,0.394636641377094,0,0,0.470958557103084,0.471346769748006,0,3.65263488203798,0,0,2.00134323694638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0.245148321753905,0,0.785233868459781,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0.543931921527318,0,0,0,0,0,0,0,0,0.101988829741982,1.06886962106224,0,0,0.0757786982182394,0,0,0.20686599172379,0.213233981900981,2.3806443146374,0,0,0,0.572824424503484,2.42540626749863,0.217716747896961,0,0,0.143444410785353,0.99798106963804,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.132529768321485,0.116193942869518,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,1.03664057770386,0.432359860250884,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.41254749960294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0.361789315876224,10.6807215421958,11.7214015527098,14.1862857097703,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0,0,0,0,0,0,0.471807930864739,0,0.468528891450678,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.969890164884194,0,0,0,0,0.696418755514666,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,1.59045937961861,0.681017030557878,0.160753148465019,0.412618309791701,0.415440338029185,0,0.77380195455795,0.850493793212345,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.610131324509816,0.3755727921195,0,0.443716206147409,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,1.41696576325585,0.638535436228605,0,0,0.760729777106397,0.484426936895553,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0.781078098613847,0.413373593002368,0.253663240775627,0,0,0.496211178389294,0.879356221798103,0,0,0.336283722218824,0,0,0,0,0,0.135939465953663,0.394636641377094,0,0,0.470958557103084,0.471346769748006,0,3.65263488203798,0,0,2.00134323694638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0.245148321753905,0,0.785233868459781,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0.543931921527318,0,0,0,0,0,0,0,0,0.101988829741982,1.06886962106224,0,0,0.0757786982182394,0,0,0.20686599172379,0.213233981900981,2.3806443146374,0,0,0,0.572824424503484,2.42540626749863,0.217716747896961,0,0,0.143444410785353,0.99798106963804,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p8@WSCD2 | |short_description=p8@WSCD2 | ||
}} | }} |
Latest revision as of 04:03, 16 September 2015
Short description: | p8@WSCD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_WSCD2_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -90bp_to_ENST00000547525_5end |
EntrezGene: | WSCD2 |
HGNC: | 29117 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 4.10e-28 | 6 |
rhombic lip | 4.10e-28 | 6 |
regional part of metencephalon | 5.33e-19 | 9 |
metencephalon | 5.33e-19 | 9 |
future metencephalon | 5.33e-19 | 9 |
segmental subdivision of hindbrain | 2.00e-14 | 12 |
hindbrain | 2.00e-14 | 12 |
presumptive hindbrain | 2.00e-14 | 12 |
segmental subdivision of nervous system | 2.29e-13 | 13 |
posterior neural tube | 1.14e-11 | 15 |
chordal neural plate | 1.14e-11 | 15 |
throat | 2.27e-10 | 2 |
Ammon's horn | 2.72e-10 | 2 |
lobe parts of cerebral cortex | 2.72e-10 | 2 |
hippocampal formation | 2.72e-10 | 2 |
limbic lobe | 2.72e-10 | 2 |
regional part of nervous system | 1.72e-08 | 53 |
regional part of brain | 1.72e-08 | 53 |
neural tube | 4.80e-08 | 56 |
neural rod | 4.80e-08 | 56 |
future spinal cord | 4.80e-08 | 56 |
neural keel | 4.80e-08 | 56 |
neural plate | 1.02e-07 | 82 |
presumptive neural plate | 1.02e-07 | 82 |
neurectoderm | 2.36e-07 | 86 |