FFCP PHASE1:Hg19::chr2:238767388..238767402,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10267 | |EntrezGene=10267 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9843 | |HGNC=9843 | ||
|TSSclassifier=strong | |||
|UniProt=E9PC20 | |UniProt=E9PC20 | ||
|association_with_transcript=-133bp_to_ENST00000404910_5end | |association_with_transcript=-133bp_to_ENST00000404910_5end | ||
|cluster_id=chr2:238767388..238767402,+ | |||
|coexpression_cluster_id=C61 | |coexpression_cluster_id=C61 | ||
|description=CAGE_peak_4_at_RAMP1_5end | |description=CAGE_peak_4_at_RAMP1_5end | ||
|id=chr2:238767388..238767402,+ | |id=chr2:238767388..238767402,+ | ||
|ontology_enrichment_celltype=CL:0000990!3.83e-15!8;CL:0000451!4.86e-12!10;CL:0000453!1.43e-11!5;CL:0000840!3.09e-09!5;CL:0001029!3.09e-09!5 | |ontology_enrichment_celltype=CL:0000990!3.83e-15!8;CL:0000451!4.86e-12!10;CL:0000453!1.43e-11!5;CL:0000840!3.09e-09!5;CL:0001029!3.09e-09!5 | ||
|ontology_enrichment_celltype_v019=CL:0000990;3.05e-53;8!CL:0000453;1.45e-43;5!CL:0000451;1.49e-43;10!CL:0000840;1.47e-20;5!CL:0001014;4.53e-08;2!CL:0001016;4.53e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000990,2.44e-53,8;CL:0000451,1.24e-43,10;CL:0000453,1.53e-43,5;CL:0000840,1.25e-20,5;CL:0001029,1.25e-20,5;CL:0001014,4.69e-08,2;CL:0001016,4.69e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0007297;7.52e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;7.52e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,8.60e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.00e-37!115;UBERON:0001049!3.01e-29!57;UBERON:0005068!3.01e-29!57;UBERON:0006241!3.01e-29!57;UBERON:0007135!3.01e-29!57;UBERON:0001017!1.71e-22!82;UBERON:0002616!4.01e-22!59;UBERON:0005743!5.88e-21!86;UBERON:0000073!1.71e-20!94;UBERON:0001016!1.71e-20!94;UBERON:0000955!2.39e-20!69;UBERON:0006238!2.39e-20!69;UBERON:0003075!2.52e-18!86;UBERON:0007284!2.52e-18!86;UBERON:0002346!3.12e-18!90;UBERON:0003076!1.19e-17!15;UBERON:0003057!1.19e-17!15;UBERON:0002020!2.63e-16!34;UBERON:0003528!2.63e-16!34;UBERON:0001893!4.67e-16!34;UBERON:0002780!1.27e-15!41;UBERON:0001890!1.27e-15!41;UBERON:0006240!1.27e-15!41;UBERON:0003080!4.09e-15!42;UBERON:0002791!6.41e-15!33;UBERON:0001869!1.71e-13!32;UBERON:0002298!1.45e-12!8;UBERON:0004733!1.48e-12!12;UBERON:0002028!1.48e-12!12;UBERON:0007277!1.48e-12!12;UBERON:0004732!1.99e-11!13;UBERON:0000033!2.67e-11!123;UBERON:0000153!4.12e-11!129;UBERON:0007811!4.12e-11!129;UBERON:0000924!3.31e-10!173;UBERON:0006601!3.31e-10!173;UBERON:0002308!4.55e-10!9;UBERON:0000125!4.55e-10!9;UBERON:0004121!4.79e-10!169;UBERON:0003056!1.29e-09!61;UBERON:0000956!5.47e-09!25;UBERON:0000203!5.47e-09!25;UBERON:0001896!1.46e-07!3;UBERON:0005290!1.46e-07!3;UBERON:0010096!1.46e-07!3;UBERON:0002619!1.86e-07!22;UBERON:0002680!1.95e-07!9;UBERON:0001895!1.95e-07!9;UBERON:0010092!1.95e-07!9;UBERON:0002420!3.02e-07!9;UBERON:0007245!3.02e-07!9;UBERON:0010009!3.02e-07!9;UBERON:0010011!3.02e-07!9;UBERON:0000454!3.02e-07!9;UBERON:0002240!4.15e-07!3;UBERON:0006331!4.50e-07!3;UBERON:0000988!5.71e-07!3;UBERON:0001950!8.11e-07!20;UBERON:0009663!9.82e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!1.00e-37!115;UBERON:0001049!3.01e-29!57;UBERON:0005068!3.01e-29!57;UBERON:0006241!3.01e-29!57;UBERON:0007135!3.01e-29!57;UBERON:0001017!1.71e-22!82;UBERON:0002616!4.01e-22!59;UBERON:0005743!5.88e-21!86;UBERON:0000073!1.71e-20!94;UBERON:0001016!1.71e-20!94;UBERON:0000955!2.39e-20!69;UBERON:0006238!2.39e-20!69;UBERON:0003075!2.52e-18!86;UBERON:0007284!2.52e-18!86;UBERON:0002346!3.12e-18!90;UBERON:0003076!1.19e-17!15;UBERON:0003057!1.19e-17!15;UBERON:0002020!2.63e-16!34;UBERON:0003528!2.63e-16!34;UBERON:0001893!4.67e-16!34;UBERON:0002780!1.27e-15!41;UBERON:0001890!1.27e-15!41;UBERON:0006240!1.27e-15!41;UBERON:0003080!4.09e-15!42;UBERON:0002791!6.41e-15!33;UBERON:0001869!1.71e-13!32;UBERON:0002298!1.45e-12!8;UBERON:0004733!1.48e-12!12;UBERON:0002028!1.48e-12!12;UBERON:0007277!1.48e-12!12;UBERON:0004732!1.99e-11!13;UBERON:0000033!2.67e-11!123;UBERON:0000153!4.12e-11!129;UBERON:0007811!4.12e-11!129;UBERON:0000924!3.31e-10!173;UBERON:0006601!3.31e-10!173;UBERON:0002308!4.55e-10!9;UBERON:0000125!4.55e-10!9;UBERON:0004121!4.79e-10!169;UBERON:0003056!1.29e-09!61;UBERON:0000956!5.47e-09!25;UBERON:0000203!5.47e-09!25;UBERON:0001896!1.46e-07!3;UBERON:0005290!1.46e-07!3;UBERON:0010096!1.46e-07!3;UBERON:0002619!1.86e-07!22;UBERON:0002680!1.95e-07!9;UBERON:0001895!1.95e-07!9;UBERON:0010092!1.95e-07!9;UBERON:0002420!3.02e-07!9;UBERON:0007245!3.02e-07!9;UBERON:0010009!3.02e-07!9;UBERON:0010011!3.02e-07!9;UBERON:0000454!3.02e-07!9;UBERON:0002240!4.15e-07!3;UBERON:0006331!4.50e-07!3;UBERON:0000988!5.71e-07!3;UBERON:0001950!8.11e-07!20;UBERON:0009663!9.82e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001896;4.37e-40;3!UBERON:0005290;4.37e-40;3!UBERON:0002298;1.98e-20;6!UBERON:0001301;2.11e-14;1!UBERON:0004733;1.57e-10;12!UBERON:0002028;1.57e-10;12!UBERON:0004732;9.19e-10;13!UBERON:0002702;7.52e-08;2!UBERON:0001875;7.52e-08;2!UBERON:0006514;7.52e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,4.38e-40,3;UBERON:0005290,4.38e-40,3;UBERON:0010096,4.38e-40,3;UBERON:0002298,1.99e-20,6;UBERON:0003076,1.82e-14,15;UBERON:0003057,1.82e-14,15;UBERON:0001301,3.15e-14,1;UBERON:0004733,1.57e-10,12;UBERON:0002028,1.57e-10,12;UBERON:0007277,1.57e-10,12;UBERON:0004732,9.19e-10,13;UBERON:0001049,4.60e-08,56;UBERON:0005068,4.60e-08,56;UBERON:0006241,4.60e-08,56;UBERON:0007135,4.60e-08,56;UBERON:0001875,6.58e-08,2;UBERON:0006514,6.58e-08,2;UBERON:0002702,7.03e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.327447688744282,0,0,0.649094787309367,1.74129737299267,3.58986493400936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.716243852959582,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0.290012154876366,0,0,0,0,0.145016693914229,0,1.15741646340759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957526850661834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0.221158519862449,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.67401132980677,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0,0.240476460754601,0.426905989478705,0,0,0,0,0,0.124252535565433,0.235694034616795,0,0,0,0,0,1.50595916781192,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,6.07429507189051,0.77380195455795,0.182248669974074,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.92562821219883,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,1.3771002377715,2.29363678276028,1.33114861844223,2.17337410294842,0,0,0,1.14186133417987,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0.168942440653073,0,0,0,0.414775308455192,19.8757515016176,7.70616073817506,18.4828895509104,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0,0,0.558644917973244,0,0,0,0,0,0.0642292250964595,0,0.798169295285756,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.596748666348824,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.339848664884159,0.131545547125698,0,0,0.078493092850514,0.157115589916002,0.280272163313789,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513314034281235,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0.588925401344836,6.23797440686881,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,0.430018749454354,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.517164979309476,0.213233981900981,0,0,0,0,0.0636471582781649,0,0,0.342233301085281,0.0673520530145875,0.78894425931944,0,0,0,0,0,0,0.855690109280065,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.327447688744282,0,0,0.649094787309367,1.74129737299267,3.58986493400936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.716243852959582,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0.290012154876366,0,0,0,0,0.145016693914229,0,1.15741646340759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957526850661834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0.221158519862449,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.67401132980677,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0,0.240476460754601,0.426905989478705,0,0,0,0,0,0.124252535565433,0.235694034616795,0,0,0,0,0,1.50595916781192,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,6.07429507189051,0.77380195455795,0.182248669974074,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.92562821219883,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,1.3771002377715,2.29363678276028,1.33114861844223,2.17337410294842,0,0,0,1.14186133417987,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0.168942440653073,0,0,0,0.414775308455192,19.8757515016176,7.70616073817506,18.4828895509104,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0,0,0.558644917973244,0,0,0,0,0,0.0642292250964595,0,0.798169295285756,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.596748666348824,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.339848664884159,0.131545547125698,0,0,0.078493092850514,0.157115589916002,0.280272163313789,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513314034281235,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0.588925401344836,6.23797440686881,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,0.430018749454354,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.517164979309476,0.213233981900981,0,0,0,0,0.0636471582781649,0,0,0.342233301085281,0.0673520530145875,0.78894425931944,0,0,0,0,0,0,0.855690109280065,0.406896178315738,0,0,0 | ||
|short_description=p4@RAMP1 | |short_description=p4@RAMP1 | ||
}} | }} |
Latest revision as of 05:07, 16 September 2015
Short description: | p4@RAMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAMP1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -133bp_to_ENST00000404910_5end |
EntrezGene: | RAMP1 |
HGNC: | 9843 |
UniProt: | E9PC20 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
conventional dendritic cell | 2.44e-53 | 8 |
dendritic cell | 1.24e-43 | 10 |
Langerhans cell | 1.53e-43 | 5 |
immature conventional dendritic cell | 1.25e-20 | 5 |
common dendritic progenitor | 1.25e-20 | 5 |
CD1a-positive Langerhans cell | 4.69e-08 | 2 |
immature CD1a-positive Langerhans cell | 4.69e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 4.38e-40 | 3 |
myelencephalon | 4.38e-40 | 3 |
future myelencephalon | 4.38e-40 | 3 |
brainstem | 1.99e-20 | 6 |
posterior neural tube | 1.82e-14 | 15 |
chordal neural plate | 1.82e-14 | 15 |
epididymis | 3.15e-14 | 1 |
segmental subdivision of hindbrain | 1.57e-10 | 12 |
hindbrain | 1.57e-10 | 12 |
presumptive hindbrain | 1.57e-10 | 12 |
segmental subdivision of nervous system | 9.19e-10 | 13 |
neural tube | 4.60e-08 | 56 |
neural rod | 4.60e-08 | 56 |
future spinal cord | 4.60e-08 | 56 |
neural keel | 4.60e-08 | 56 |
globus pallidus | 6.58e-08 | 2 |
pallidum | 6.58e-08 | 2 |
middle frontal gyrus | 7.03e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 8.60e-08 | 2 |