FFCP PHASE1:Hg19::chrX:69488169..69488172,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=407 | |EntrezGene=407 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=710 | |HGNC=710 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000477379_5end | |association_with_transcript=-11bp_to_ENST00000477379_5end | ||
|cluster_id=chrX:69488169..69488172,+ | |||
|coexpression_cluster_id=C1201 | |coexpression_cluster_id=C1201 | ||
|description=CAGE_peak_3_at_ARR3_5end | |description=CAGE_peak_3_at_ARR3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.27e-23;3!UBERON:0006238;2.47e-07;10 | |ontology_enrichment_development_v019=UBERON:0003056;3.27e-23;3!UBERON:0006238;2.47e-07;10 | ||
|ontology_enrichment_disease=DOID:5409!1.12e-09!4 | |ontology_enrichment_disease=DOID:5409!1.12e-09!4 | ||
|ontology_enrichment_disease_v019=DOID:5409;8.69e-18;4!DOID:1325;8.99e-11;7!DOID:3904;8.99e-11;7!DOID:3905;1.12e-08;9!DOID:3093;7.92e-07;11 | |ontology_enrichment_disease_v019=DOID:5409;8.69e-18;4!DOID:1325;8.99e-11;7!DOID:3904;8.99e-11;7!DOID:3905;1.12e-08;9!DOID:3093;7.92e-07;11 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,7.35e-18,4;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:3905,1.04e-08,9;DOID:3093,8.38e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0001905!2.84e-66!2;UBERON:0002757!2.84e-66!2;UBERON:0010134!2.84e-66!2;UBERON:0002784!2.84e-66!2;UBERON:0005408!2.84e-66!2;UBERON:0001899!2.84e-66!2;UBERON:0003296!8.36e-34!4;UBERON:0010133!8.36e-34!4;UBERON:0000966!2.72e-27!5;UBERON:0005388!2.72e-27!5;UBERON:0001802!2.72e-27!5;UBERON:0001894!7.84e-20!7;UBERON:0006222!7.84e-20!7;UBERON:0000970!1.50e-15!20;UBERON:0002104!7.53e-15!21;UBERON:0000020!1.25e-13!23;UBERON:0001032!4.28e-13!24;UBERON:0004456!4.28e-13!24;UBERON:0003056!4.34e-09!61;UBERON:0000019!5.94e-08!19;UBERON:0000047!5.94e-08!19;UBERON:0004088!5.94e-08!19;UBERON:0003072!5.94e-08!19;UBERON:0003071!5.94e-08!19;UBERON:0004128!5.94e-08!19;UBERON:0001456!2.77e-07!21 | |ontology_enrichment_uberon=UBERON:0001905!2.84e-66!2;UBERON:0002757!2.84e-66!2;UBERON:0010134!2.84e-66!2;UBERON:0002784!2.84e-66!2;UBERON:0005408!2.84e-66!2;UBERON:0001899!2.84e-66!2;UBERON:0003296!8.36e-34!4;UBERON:0010133!8.36e-34!4;UBERON:0000966!2.72e-27!5;UBERON:0005388!2.72e-27!5;UBERON:0001802!2.72e-27!5;UBERON:0001894!7.84e-20!7;UBERON:0006222!7.84e-20!7;UBERON:0000970!1.50e-15!20;UBERON:0002104!7.53e-15!21;UBERON:0000020!1.25e-13!23;UBERON:0001032!4.28e-13!24;UBERON:0004456!4.28e-13!24;UBERON:0003056!4.34e-09!61;UBERON:0000019!5.94e-08!19;UBERON:0000047!5.94e-08!19;UBERON:0004088!5.94e-08!19;UBERON:0003072!5.94e-08!19;UBERON:0003071!5.94e-08!19;UBERON:0004128!5.94e-08!19;UBERON:0001456!2.77e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;5.04e-34;2!UBERON:0002757;5.04e-34;2!UBERON:0010134;5.04e-34;2!UBERON:0005408;5.04e-34;2!UBERON:0001899;5.04e-34;2!UBERON:0003296;8.69e-18;4!UBERON:0010133;8.69e-18;4!UBERON:0002784;8.69e-18;4!UBERON:0000966;1.60e-14;5!UBERON:0005388;1.60e-14;5!UBERON:0001802;1.60e-14;5!UBERON:0001894;8.99e-11;7 | |ontology_enrichment_uberon_v019=UBERON:0001905;5.04e-34;2!UBERON:0002757;5.04e-34;2!UBERON:0010134;5.04e-34;2!UBERON:0005408;5.04e-34;2!UBERON:0001899;5.04e-34;2!UBERON:0003296;8.69e-18;4!UBERON:0010133;8.69e-18;4!UBERON:0002784;8.69e-18;4!UBERON:0000966;1.60e-14;5!UBERON:0005388;1.60e-14;5!UBERON:0001802;1.60e-14;5!UBERON:0001894;8.99e-11;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.04e-34,2;UBERON:0002757,5.04e-34,2;UBERON:0010134,5.04e-34,2;UBERON:0005408,5.04e-34,2;UBERON:0001899,5.04e-34,2;UBERON:0003296,8.69e-18,4;UBERON:0010133,8.69e-18,4;UBERON:0002784,8.69e-18,4;UBERON:0000966,2.74e-12,6;UBERON:0005388,2.74e-12,6;UBERON:0001802,2.74e-12,6;UBERON:0001894,8.99e-11,7;UBERON:0006222,8.99e-11,7 | |||
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|short_description=p3@ARR3 | |short_description=p3@ARR3 | ||
}} | }} |
Latest revision as of 05:59, 16 September 2015
Short description: | p3@ARR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARR3_5end |
Coexpression cluster: | C1201_pineal_small_retinoblastoma_medulloblastoma_eye_retina_Neural |
Association with transcript: | -11bp_to_ENST00000477379_5end |
EntrezGene: | ARR3 |
HGNC: | 710 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 5.04e-34 | 2 |
regional part of epithalamus | 5.04e-34 | 2 |
secretory circumventricular organ | 5.04e-34 | 2 |
circumventricular organ | 5.04e-34 | 2 |
epithalamus | 5.04e-34 | 2 |
gland of diencephalon | 8.69e-18 | 4 |
neuroendocrine gland | 8.69e-18 | 4 |
regional part of diencephalon | 8.69e-18 | 4 |
retina | 2.74e-12 | 6 |
photoreceptor array | 2.74e-12 | 6 |
posterior segment of eyeball | 2.74e-12 | 6 |
diencephalon | 8.99e-11 | 7 |
future diencephalon | 8.99e-11 | 7 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 7.35e-18 | 4 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
lung carcinoma | 1.04e-08 | 9 |
nervous system cancer | 8.38e-07 | 11 |