FFCP PHASE1:Hg19::chr2:110970096..110970134,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=205251 | |EntrezGene=205251 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=27339 | |HGNC=27339 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_BC031315_5end | |association_with_transcript=0bp_to_BC031315_5end | ||
|cluster_id=chr2:110970096..110970134,- | |||
|coexpression_cluster_id=C2480 | |||
|description=CAGE_peak_1_at_LINC00116_5end | |description=CAGE_peak_1_at_LINC00116_5end | ||
|id=chr2:110970096..110970134,- | |id=chr2:110970096..110970134,- | ||
|ontology_enrichment_celltype=CL:0000222!3.09e-12!119;CL:0000183!1.34e-10!59;CL:0000220!2.96e-10!246;CL:0000055!4.09e-10!180;CL:0002321!1.57e-09!248;CL:0000680!7.67e-09!57;CL:0000056!7.67e-09!57;CL:0000355!7.67e-09!57;CL:0000187!8.51e-09!54;CL:0000192!1.55e-07!42;CL:0000514!1.55e-07!42;CL:0000393!5.00e-07!60;CL:0000211!5.00e-07!60 | |ontology_enrichment_celltype=CL:0000222!3.09e-12!119;CL:0000183!1.34e-10!59;CL:0000220!2.96e-10!246;CL:0000055!4.09e-10!180;CL:0002321!1.57e-09!248;CL:0000680!7.67e-09!57;CL:0000056!7.67e-09!57;CL:0000355!7.67e-09!57;CL:0000187!8.51e-09!54;CL:0000192!1.55e-07!42;CL:0000514!1.55e-07!42;CL:0000393!5.00e-07!60;CL:0000211!5.00e-07!60 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.86e-12,121;CL:0002321,1.30e-09,250;CL:0000680,1.58e-08,58;CL:0000056,1.58e-08,58;CL:0000355,1.58e-08,58;CL:0000187,1.79e-08,55;CL:0000192,3.36e-07,43;CL:0000514,3.36e-07,43;CL:0000393,8.90e-07,61;CL:0000211,8.90e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.46e-18,199;UBERON:0003104,3.14e-13,160;UBERON:0009142,3.14e-13,160;UBERON:0007503,4.33e-13,78;UBERON:0000490,3.43e-12,148;UBERON:0005256,3.60e-12,122;UBERON:0000486,1.72e-11,83;UBERON:0003914,2.78e-11,117;UBERON:0002329,1.11e-10,71;UBERON:0003059,1.11e-10,71;UBERON:0007282,1.11e-10,71;UBERON:0004290,1.11e-10,71;UBERON:0009618,1.11e-10,71;UBERON:0007524,1.32e-10,73;UBERON:0003077,1.60e-10,72;UBERON:0007285,1.60e-10,72;UBERON:0000483,4.69e-10,306;UBERON:0000119,1.31e-09,309;UBERON:0001134,1.35e-09,62;UBERON:0002036,1.35e-09,62;UBERON:0003082,1.35e-09,62;UBERON:0002385,2.08e-09,64;UBERON:0001015,2.08e-09,64;UBERON:0000383,2.08e-09,64;UBERON:0004872,4.65e-08,83;UBERON:0009569,5.73e-08,112;UBERON:0000055,7.24e-08,68;UBERON:0007500,9.92e-08,59;UBERON:0001981,9.92e-08,59;UBERON:0004537,9.92e-08,59;UBERON:0006965,9.92e-08,59;UBERON:0003103,1.69e-07,68;UBERON:0002049,3.83e-07,78;UBERON:0007798,3.83e-07,78;UBERON:0004111,7.09e-07,240 | |||
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| ||
|short_description=p1@LINC00116 | |short_description=p1@LINC00116 | ||
}} | }} |
Latest revision as of 07:49, 16 September 2015
Short description: | p1@LINC00116 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00116_5end |
Coexpression cluster: | C2480_Mesenchymal_liposarcoma_skeletal_Alveolar_heart_left_Osteoblast |
Association with transcript: | 0bp_to_BC031315_5end |
EntrezGene: | LINC00116 |
HGNC: | 27339 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.86e-12 | 121 |
embryonic cell | 1.30e-09 | 250 |
muscle precursor cell | 1.58e-08 | 58 |
myoblast | 1.58e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.58e-08 | 58 |
muscle cell | 1.79e-08 | 55 |
smooth muscle cell | 3.36e-07 | 43 |
smooth muscle myoblast | 3.36e-07 | 43 |
electrically responsive cell | 8.90e-07 | 61 |
electrically active cell | 8.90e-07 | 61 |