FFCP PHASE1:Hg19::chr1:2323260..2323307,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11079 | |EntrezGene=11079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30309 | |HGNC=30309 | ||
|TSSclassifier=strong | |||
|UniProt=O15258,Q5T093,Q9P0H9 | |UniProt=O15258,Q5T093,Q9P0H9 | ||
|association_with_transcript=0bp_to_ENST00000306256,ENST00000378513,ENST00000378518,ENST00000434662,ENST00000493207_5end | |association_with_transcript=0bp_to_ENST00000306256,ENST00000378513,ENST00000378518,ENST00000434662,ENST00000493207_5end | ||
|cluster_id=chr1:2323260..2323307,+ | |||
|coexpression_cluster_id=C562 | |coexpression_cluster_id=C562 | ||
|description=CAGE_peak_1_at_RER1_5end | |description=CAGE_peak_1_at_RER1_5end | ||
|id=chr1:2323260..2323307,+ | |id=chr1:2323260..2323307,+ | ||
|ontology_enrichment_celltype=CL:0000359;1.42e-13;32!CL:0000192;2.02e-12;43!CL:0000187;1.54e-10;55!CL:0000134;1.22e-09;55!CL:0000048;4.24e-08;58!CL:0000723;6.14e-08;61!CL:0000393;6.16e-08;61!CL:0000211;6.16e-08;61!CL:0000057;6.40e-08;73!CL:0002320;3.18e-07;188 | |ontology_enrichment_celltype=CL:0000055!9.76e-31!180;CL:0002371!3.22e-30!591;CL:0000144!3.81e-27!625;CL:0000548!1.16e-24!679;CL:0000004!1.16e-24!679;CL:0000255!1.16e-24!679;CL:0000012!2.19e-23!682;CL:0000183!1.59e-20!59;CL:0000222!2.33e-20!119;CL:0000680!2.10e-19!57;CL:0000056!2.10e-19!57;CL:0000355!2.10e-19!57;CL:0000187!1.44e-18!54;CL:0000192!2.05e-17!42;CL:0000514!2.05e-17!42;CL:0000003!7.19e-17!722;CL:0000057!8.86e-17!75;CL:0000220!4.20e-16!246;CL:0002321!3.23e-15!248;CL:0000393!4.30e-15!60;CL:0000211!4.30e-15!60;CL:0000359!2.04e-14!32;CL:0000048!5.28e-14!430;CL:0000723!7.24e-14!436;CL:0000034!1.71e-11!444;CL:0000063!4.52e-08!578 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;1.42e-13;32!CL:0000192;2.02e-12;43!CL:0000187;1.54e-10;55!CL:0000134;1.22e-09;55!CL:0000048;4.24e-08;58!CL:0000723;6.14e-08;61!CL:0000393;6.16e-08;61!CL:0000211;6.16e-08;61!CL:0000057;6.40e-08;73!CL:0002320;3.18e-07;188 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.99e-21,121;CL:0000680,2.67e-19,58;CL:0000056,2.67e-19,58;CL:0000355,2.67e-19,58;CL:0000187,1.84e-18,55;CL:0000192,2.91e-17,43;CL:0000514,2.91e-17,43;CL:0000057,3.01e-17,76;CL:0002321,1.46e-15,250;CL:0000393,4.83e-15,61;CL:0000211,4.83e-15,61;CL:0000359,2.04e-14,32;CL:0000048,4.10e-14,427;CL:0000723,5.66e-14,433;CL:0000034,1.38e-11,441 | |||
|ontology_enrichment_development_v019=CL:0000514;2.02e-12;43!CL:0000355;1.59e-10;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004573;2.26e-10;33!UBERON:0004571;2.26e-10;33!UBERON:0001637;3.30e-10;42!UBERON:0003509;3.30e-10;42!UBERON:0004572;3.30e-10;42!UBERON:0007500;5.38e-08;56!UBERON:0001981;5.38e-08;56!UBERON:0004537;5.38e-08;56!UBERON:0003914;1.20e-07;74!UBERON:0002384;6.85e-07;198!UBERON:0003102;9.11e-07;50 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.35e-22!143;UBERON:0000914!1.11e-20!83;UBERON:0002329!1.11e-20!83;UBERON:0003077!1.11e-20!83;UBERON:0003059!1.11e-20!83;UBERON:0007282!1.11e-20!83;UBERON:0009618!1.11e-20!83;UBERON:0007285!1.11e-20!83;UBERON:0004290!2.05e-19!70;UBERON:0000486!1.05e-18!82;UBERON:0003914!1.81e-17!118;UBERON:0001134!7.79e-17!61;UBERON:0002036!7.79e-17!61;UBERON:0003082!7.79e-17!61;UBERON:0002385!4.18e-16!63;UBERON:0001015!4.18e-16!63;UBERON:0000383!4.18e-16!63;UBERON:0002100!4.79e-16!216;UBERON:0000490!2.50e-14!138;UBERON:0002049!2.90e-14!79;UBERON:0007798!2.90e-14!79;UBERON:0001637!7.11e-14!42;UBERON:0003509!7.11e-14!42;UBERON:0004572!7.11e-14!42;UBERON:0004535!1.44e-13!110;UBERON:0004872!1.58e-13!84;UBERON:0001009!2.40e-13!113;UBERON:0001981!1.55e-12!60;UBERON:0007500!1.55e-12!60;UBERON:0004537!1.55e-12!60;UBERON:0006965!1.55e-12!60;UBERON:0000055!2.34e-12!69;UBERON:0003104!2.77e-12!238;UBERON:0009142!2.77e-12!238;UBERON:0000926!1.39e-11!448;UBERON:0004120!1.39e-11!448;UBERON:0006603!1.39e-11!448;UBERON:0004573!2.12e-11!33;UBERON:0004571!2.12e-11!33;UBERON:0002199!6.00e-08!45;UBERON:0002416!6.00e-08!45;UBERON:0003102!3.33e-07!95;UBERON:0000353!5.94e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.26e-10;33!UBERON:0004571;2.26e-10;33!UBERON:0001637;3.30e-10;42!UBERON:0003509;3.30e-10;42!UBERON:0004572;3.30e-10;42!UBERON:0007500;5.38e-08;56!UBERON:0001981;5.38e-08;56!UBERON:0004537;5.38e-08;56!UBERON:0003914;1.20e-07;74!UBERON:0002384;6.85e-07;198!UBERON:0003102;9.11e-07;50 | |||
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| ||
|short_description=p1@RER1 | |short_description=p1@RER1 | ||
}} | }} |
Latest revision as of 08:45, 16 September 2015
Short description: | p1@RER1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RER1_5end |
Coexpression cluster: | C562_Smooth_Fibroblast_Preadipocyte_Hepatic_Alveolar_Adipocyte_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000306256, ENST00000378513, ENST00000378518, ENST00000434662, ENST00000493207_5end |
EntrezGene: | RER1 |
HGNC: | 30309 |
UniProt: | O15258Q5T093Q9P0H9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.99e-21 | 121 |
muscle precursor cell | 2.67e-19 | 58 |
myoblast | 2.67e-19 | 58 |
multi-potent skeletal muscle stem cell | 2.67e-19 | 58 |
muscle cell | 1.84e-18 | 55 |
smooth muscle cell | 2.91e-17 | 43 |
smooth muscle myoblast | 2.91e-17 | 43 |
fibroblast | 3.01e-17 | 76 |
embryonic cell | 1.46e-15 | 250 |
electrically responsive cell | 4.83e-15 | 61 |
electrically active cell | 4.83e-15 | 61 |
vascular associated smooth muscle cell | 2.04e-14 | 32 |
multi fate stem cell | 4.10e-14 | 427 |
somatic stem cell | 5.66e-14 | 433 |
stem cell | 1.38e-11 | 441 |