FFCP PHASE1:Hg19::chr17:56494853..56494874,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54894 | |EntrezGene=54894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18505 | |HGNC=18505 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_uc002iwf.2_5end | |association_with_transcript=19bp_to_uc002iwf.2_5end | ||
|cluster_id=chr17:56494853..56494874,- | |||
|coexpression_cluster_id=C2423 | |||
|description=CAGE_peak_3_at_RNF43_5end | |description=CAGE_peak_3_at_RNF43_5end | ||
|id=chr17:56494853..56494874,- | |id=chr17:56494853..56494874,- | ||
|ontology_enrichment_celltype=CL:0000223!1.09e-21!59;CL:0000066!1.93e-21!254;CL:0002076!2.46e-17!43;CL:0002251!2.95e-12!21;CL:0002368!9.84e-08!13;CL:0002159!1.86e-07!13 | |ontology_enrichment_celltype=CL:0000223!1.09e-21!59;CL:0000066!1.93e-21!254;CL:0002076!2.46e-17!43;CL:0002251!2.95e-12!21;CL:0002368!9.84e-08!13;CL:0002159!1.86e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002251;1.10e-21;20!CL:0002076;1.01e-15;42!CL:0002159;1.00e-10;14!CL:0002166;4.87e-09;3!CL:0002621;1.41e-08;3!CL:0000182;2.01e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.42e-22,58;CL:0002251,1.87e-21,20;CL:0002076,8.98e-19,42;CL:0000066,1.59e-11,253;CL:0002159,6.04e-11,14;CL:0002166,4.84e-09,3;CL:0002621,1.23e-08,3;CL:0000182,2.58e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.98e-17;11!UBERON:0003104;1.20e-16;31!UBERON:0009497;2.63e-14;13!CL:0000223;2.88e-10;58!UBERON:0001041;1.25e-09;30!UBERON:0006595;6.36e-09;86 | |||
|ontology_enrichment_disease=DOID:305!4.45e-26!106;DOID:0050687!1.94e-18!143;DOID:162!8.25e-09!235;DOID:1749!1.45e-08!14;DOID:14566!3.61e-08!239;DOID:7!4.56e-07!39;DOID:299!8.81e-07!25 | |ontology_enrichment_disease=DOID:305!4.45e-26!106;DOID:0050687!1.94e-18!143;DOID:162!8.25e-09!235;DOID:1749!1.45e-08!14;DOID:14566!3.61e-08!239;DOID:7!4.56e-07!39;DOID:299!8.81e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:3119;2.16e-11;14!DOID:1749;7.20e-08;14!DOID:3493;7.33e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.06e-12,106;DOID:3119,2.11e-11,14;DOID:1749,7.93e-08,14;DOID:7,9.62e-08,39;DOID:0050687,2.40e-07,143;DOID:3493,7.17e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.33e-28!169;UBERON:0000925!2.33e-28!169;UBERON:0006595!2.33e-28!169;UBERON:0001007!4.97e-26!155;UBERON:0001555!4.97e-26!155;UBERON:0007026!4.97e-26!155;UBERON:0004921!7.73e-23!129;UBERON:0004185!7.73e-23!129;UBERON:0000077!1.04e-18!130;UBERON:0005911!4.47e-17!82;UBERON:0001041!1.29e-15!98;UBERON:0001004!6.17e-15!72;UBERON:0000466!5.70e-12!126;UBERON:0001048!1.02e-11!168;UBERON:0003929!3.19e-11!54;UBERON:0000065!3.81e-11!53;UBERON:0000481!5.40e-11!347;UBERON:0002530!6.87e-11!59;UBERON:0005177!1.20e-10!107;UBERON:0002365!2.42e-09!31;UBERON:0002330!2.42e-09!31;UBERON:0000062!4.18e-09!511;UBERON:0005153!5.84e-09!37;UBERON:0000344!1.01e-08!12;UBERON:0008947!1.05e-08!38;UBERON:0003258!1.05e-08!38;UBERON:0000063!2.42e-08!97;UBERON:0000464!3.14e-08!104;UBERON:0009569!3.34e-08!113;UBERON:0009856!1.78e-07!26;UBERON:0005157!2.26e-07!51;UBERON:0000072!2.42e-07!46;UBERON:0009497!2.73e-07!25;UBERON:0000015!2.73e-07!25;UBERON:0002423!2.73e-07!25;UBERON:0006235!2.73e-07!25;UBERON:0004161!2.73e-07!25;UBERON:0000161!3.45e-07!35;UBERON:0007023!3.89e-07!115;UBERON:0003104!4.26e-07!238;UBERON:0009142!4.26e-07!238;UBERON:0005178!4.28e-07!34;UBERON:0002224!4.28e-07!34;UBERON:0007499!6.65e-07!25;UBERON:0005409!7.00e-07!35 | |ontology_enrichment_uberon=UBERON:0004119!2.33e-28!169;UBERON:0000925!2.33e-28!169;UBERON:0006595!2.33e-28!169;UBERON:0001007!4.97e-26!155;UBERON:0001555!4.97e-26!155;UBERON:0007026!4.97e-26!155;UBERON:0004921!7.73e-23!129;UBERON:0004185!7.73e-23!129;UBERON:0000077!1.04e-18!130;UBERON:0005911!4.47e-17!82;UBERON:0001041!1.29e-15!98;UBERON:0001004!6.17e-15!72;UBERON:0000466!5.70e-12!126;UBERON:0001048!1.02e-11!168;UBERON:0003929!3.19e-11!54;UBERON:0000065!3.81e-11!53;UBERON:0000481!5.40e-11!347;UBERON:0002530!6.87e-11!59;UBERON:0005177!1.20e-10!107;UBERON:0002365!2.42e-09!31;UBERON:0002330!2.42e-09!31;UBERON:0000062!4.18e-09!511;UBERON:0005153!5.84e-09!37;UBERON:0000344!1.01e-08!12;UBERON:0008947!1.05e-08!38;UBERON:0003258!1.05e-08!38;UBERON:0000063!2.42e-08!97;UBERON:0000464!3.14e-08!104;UBERON:0009569!3.34e-08!113;UBERON:0009856!1.78e-07!26;UBERON:0005157!2.26e-07!51;UBERON:0000072!2.42e-07!46;UBERON:0009497!2.73e-07!25;UBERON:0000015!2.73e-07!25;UBERON:0002423!2.73e-07!25;UBERON:0006235!2.73e-07!25;UBERON:0004161!2.73e-07!25;UBERON:0000161!3.45e-07!35;UBERON:0007023!3.89e-07!115;UBERON:0003104!4.26e-07!238;UBERON:0009142!4.26e-07!238;UBERON:0005178!4.28e-07!34;UBERON:0002224!4.28e-07!34;UBERON:0007499!6.65e-07!25;UBERON:0005409!7.00e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.54e-14;22!UBERON:0004921;1.70e-13;33!UBERON:0003929;2.21e-13;7!UBERON:0001555;5.04e-13;54!UBERON:0000344;5.17e-13;20!UBERON:0002423;4.88e-12;25!UBERON:0003350;1.33e-11;8!UBERON:0001007;1.59e-11;81!UBERON:0003729;6.75e-11;13!UBERON:0000160;2.25e-10;17!UBERON:0003343;8.33e-10;4!UBERON:0004785;8.33e-10;4!UBERON:0000161;8.35e-09;19!UBERON:0000166;8.35e-09;19!UBERON:0002365;9.37e-09;31!UBERON:0002330;9.37e-09;31!UBERON:0001949;1.41e-08;3!UBERON:0000165;3.81e-08;28!UBERON:0002110;7.65e-08;3!UBERON:0006947;7.65e-08;3!UBERON:0004054;7.65e-08;3!UBERON:0002107;2.31e-07;19!UBERON:0006925;2.31e-07;19!UBERON:0001708;7.58e-07;4!UBERON:0008895;7.58e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.00e-19,160;UBERON:0000925,1.00e-19,160;UBERON:0006595,1.00e-19,160;UBERON:0001007,3.64e-19,145;UBERON:0001555,3.64e-19,145;UBERON:0007026,3.64e-19,145;UBERON:0004921,3.47e-13,118;UBERON:0000344,6.70e-13,20;UBERON:0005409,2.81e-12,25;UBERON:0003929,3.71e-12,54;UBERON:0009497,5.59e-12,25;UBERON:0000015,5.59e-12,25;UBERON:0002423,5.59e-12,25;UBERON:0006235,5.59e-12,25;UBERON:0004161,5.59e-12,25;UBERON:0003350,1.39e-11,8;UBERON:0003729,8.07e-11,13;UBERON:0000160,2.02e-10,17;UBERON:0005911,2.26e-10,82;UBERON:0003343,8.20e-10,4;UBERON:0004785,8.20e-10,4;UBERON:0000166,4.26e-09,22;UBERON:0002365,5.02e-09,31;UBERON:0002330,5.02e-09,31;UBERON:0005172,6.11e-09,54;UBERON:0005173,6.11e-09,54;UBERON:0001949,1.23e-08,3;UBERON:0007499,2.30e-08,25;UBERON:0001041,2.34e-08,87;UBERON:0006947,4.67e-08,3;UBERON:0004054,4.67e-08,3;UBERON:0009856,5.81e-08,26;UBERON:0002110,6.11e-08,3;UBERON:0006242,6.11e-08,3;UBERON:0008835,7.58e-08,22;UBERON:0003894,7.58e-08,22;UBERON:0000165,9.82e-08,29;UBERON:0000930,9.82e-08,29;UBERON:0002417,1.19e-07,60;UBERON:0000916,1.19e-07,60;UBERON:0000033,1.60e-07,56;UBERON:0009854,1.98e-07,23;UBERON:0001004,2.21e-07,74;UBERON:0002107,2.82e-07,19;UBERON:0006925,2.82e-07,19;UBERON:0008836,2.82e-07,19;UBERON:0005177,5.02e-07,101;UBERON:0011216,7.06e-07,223;UBERON:0001708,7.54e-07,4;UBERON:0008895,7.54e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,1.39560233594486,0,0,0,0,0,0,0,0,1.10808952269109,0,1.88072832886853,0,0,0,1.14620108621927,0.903106483949403,1.25937250101887,0,0,0,0,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,1.44076983047484,2.91436230634034,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,4.09119180886252,4.30206893083506,0.487894824518382,0.265059536642971,0.464775771478074,0.414644220061482,0,0.36497735907583,0,0,0,0,0,0.591534000199219,0.674338760312407,0,0.110293972732394,0,0.949082476444386,0.808987848960987,0.392442930250692,0,0,0,0,0,0,0,0.590789906681404,0,3.07471096357784,0,3.62175941848464,0,1.60846355858609,1.01847289674383,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,4.68669169933885,4.03157107677263,3.26082723657489,0.626909658919938,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,1.32945394550784,0.802025881213139,0.368323955743585,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,1.44257416306811,0.0915694648183434,0,1.72279661398852,3.25030123018261,0,0,0,0,0,0,0,0,0,1.65284915360978,1.34533047155574,4.59405764980503,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,0,3.26672954583968,2.07116361708914,0.43050537267123,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0.222886768554957,3.12549761487054,0,0.296964680832639,0,0,0,0,0,0,0,0.828851746593443,0.755798243562828,0,0.984678443688556,0,0,0.358042349351218,0,0.394573622547734,0,0,0,0.185536196323703,0,2.08342208868187,0.962059999958153,0,2.27586896570999,0.254253650292766,0.472775363535873,0,0.583209226766509,0,0,0,0,1.87984741883082,0.591095237907095,0,0,1.67308493134324,0.153900517007594,0.341826167541004,0,0.0897576444097721,0.651884231532048,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0.210998064528027,0.489698424477443,3.1097675715467,3.02944095638928,0.995261931078505,2.38835424159016,2.4441205797345,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,1.57833761139756,0,0,0.442306057399416,1.35291077473043,2.07376382794494,0,0,0,0,0,0,0,2.05784034570193,0.609414446062818,2.09672001890436,0,0.0967563312890851,0,0,1.06687918137261,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,1.17330829640882,2.32460578729448,1.70762395791482,0,2.59362750877391,4.81053703896846,0,1.00838358591705,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.687481272035051,0,0,0,0.669514372325618,0.335917362433631,0,4.65983798109815,5.987521855349,6.59326867049332,8.42544298177311,1.18112977817699,1.27009998098677,0,0,0.160753148465019,0,0,0.449947783103001,0,0.0607495566580247,0.670869375198532,1.10327990218877,0.734364233889974,0,0,0.575745591958336,0,0,0,0,0,0,0,0.164185041498678,0,0,1.31897010310274,1.32506888912221,0.129282956361551,0.39669780522807,1.88195521672762,0.704815022316672,0.427149650270779,0.943225830597996,1.24271716604159,0,0,0.730755590285376,7.021753835472,0,0,0,0,6.28216385000937,0,0.244052529803926,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0.624902039810533,0,0.285465333544967,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0.694567422971502,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0.211312123358627,0,0,0,0,0.184105950251841,1.11903606175556,0.622077260032973,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.207471757392654,0,0,1.27592034051333,1.06172751012966,2.20114318226015,1.96393632455575,0,0,0,0.300841313397029,0.40341013740704,0.781514011233092,0.785720083444267,0,7.24494822463522,0.270150338473579,0,0,0,0,1.64477330057155,0,0,1.02209942111676,0,0.336283722218824,0.606965604236632,2.27662191351298,0.443511850813194,0,1.02892805662451,0,0.131545547125698,0.590969204419841,0.556157009460346,0.706437835654626,0,2.24217730651031,0,0.215927591218621,0.47775168788705,0.142953088353313,0.158013611732727,0,0,0,0,0.6828739083758,0.691259661814092,1.29068207646083,0,0,1.69354820076372,0.9164274741762,0,0,0,7.65571822198895,14.6301509978723,0,0,0,0.485710993059139,0,8.55488333193883,0,27.3329518534283,0,0.150962843566674,2.9326180081019,0.655678681511872,0,0,0.942706188406504,0,0.297046400327086,0,0,0,0.0644578879735772,0,0.535661815816973,0.352894871715692,0.641930933513346,0,0,0,0,0.1359829803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| ||
|short_description=p3@RNF43 | |short_description=p3@RNF43 | ||
}} | }} |
Latest revision as of 11:25, 16 September 2015
Short description: | p3@RNF43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RNF43_5end |
Coexpression cluster: | C2423_small_signet_papillotubular_malignant_hepatocellular_maxillary_colon |
Association with transcript: | 19bp_to_uc002iwf.2_5end |
EntrezGene: | RNF43 |
HGNC: | 18505 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.42e-22 | 58 |
epithelial cell of alimentary canal | 1.87e-21 | 20 |
endo-epithelial cell | 8.98e-19 | 42 |
epithelial cell | 1.59e-11 | 253 |
general ecto-epithelial cell | 6.04e-11 | 14 |
epithelial cell of Malassez | 4.84e-09 | 3 |
gingival epithelial cell | 1.23e-08 | 3 |
hepatocyte | 2.58e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.06e-12 | 106 |
gastrointestinal system cancer | 2.11e-11 | 14 |
squamous cell carcinoma | 7.93e-08 | 14 |
disease of anatomical entity | 9.62e-08 | 39 |
cell type cancer | 2.40e-07 | 143 |
signet ring cell adenocarcinoma | 7.17e-07 | 2 |