FFCP PHASE1:Hg19::chr19:17622415..17622481,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25796 | |EntrezGene=25796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8903 | |HGNC=8903 | ||
|TSSclassifier=strong | |||
|UniProt=O95336 | |UniProt=O95336 | ||
|association_with_transcript=0bp_to_ENST00000252603,NM_012088,uc002ngw.2_5end | |association_with_transcript=0bp_to_ENST00000252603,NM_012088,uc002ngw.2_5end | ||
|cluster_id=chr19:17622415..17622481,+ | |||
|coexpression_cluster_id=C385 | |coexpression_cluster_id=C385 | ||
|description=CAGE_peak_1_at_PGLS_5end | |description=CAGE_peak_1_at_PGLS_5end | ||
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|ontology_enrichment_celltype=CL:0000012!9.94e-32!682;CL:0000144!2.18e-31!625;CL:0002371!2.98e-31!591;CL:0000548!7.09e-31!679;CL:0000004!7.09e-31!679;CL:0000255!7.09e-31!679;CL:0000003!1.82e-22!722;CL:0000220!8.92e-20!246;CL:0002321!2.87e-19!248;CL:0000222!4.58e-19!119;CL:0000183!1.15e-12!59;CL:0000192!6.15e-12!42;CL:0000514!6.15e-12!42;CL:0000055!6.74e-12!180;CL:0000063!7.02e-12!578;CL:0000359!7.80e-11!32;CL:0000393!8.29e-11!60;CL:0000211!8.29e-11!60;CL:0000680!1.09e-10!57;CL:0000056!1.09e-10!57;CL:0000355!1.09e-10!57;CL:0000187!1.51e-10!54;CL:0002078!1.40e-09!44;CL:0000048!2.95e-09!430;CL:0000034!4.08e-09!444;CL:0000723!4.19e-09!436;CL:0000115!8.80e-09!35;CL:0000213!1.17e-08!57;CL:0000215!1.17e-08!57;CL:0000066!4.60e-07!254 | |ontology_enrichment_celltype=CL:0000012!9.94e-32!682;CL:0000144!2.18e-31!625;CL:0002371!2.98e-31!591;CL:0000548!7.09e-31!679;CL:0000004!7.09e-31!679;CL:0000255!7.09e-31!679;CL:0000003!1.82e-22!722;CL:0000220!8.92e-20!246;CL:0002321!2.87e-19!248;CL:0000222!4.58e-19!119;CL:0000183!1.15e-12!59;CL:0000192!6.15e-12!42;CL:0000514!6.15e-12!42;CL:0000055!6.74e-12!180;CL:0000063!7.02e-12!578;CL:0000359!7.80e-11!32;CL:0000393!8.29e-11!60;CL:0000211!8.29e-11!60;CL:0000680!1.09e-10!57;CL:0000056!1.09e-10!57;CL:0000355!1.09e-10!57;CL:0000187!1.51e-10!54;CL:0002078!1.40e-09!44;CL:0000048!2.95e-09!430;CL:0000034!4.08e-09!444;CL:0000723!4.19e-09!436;CL:0000115!8.80e-09!35;CL:0000213!1.17e-08!57;CL:0000215!1.17e-08!57;CL:0000066!4.60e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0000359;3.20e-10;32!CL:0000192;7.05e-09;43!CL:0000115;8.66e-08;36!CL:0002078;1.67e-07;45 | |ontology_enrichment_celltype_v019=CL:0000359;3.20e-10;32!CL:0000192;7.05e-09;43!CL:0000115;8.66e-08;36!CL:0002078;1.67e-07;45 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.15e-19,250;CL:0000222,1.89e-19,121;CL:0000192,5.91e-12,43;CL:0000514,5.91e-12,43;CL:0000393,7.27e-11,61;CL:0000211,7.27e-11,61;CL:0000359,7.80e-11,32;CL:0000680,9.59e-11,58;CL:0000056,9.59e-11,58;CL:0000355,9.59e-11,58;CL:0000187,1.34e-10,55;CL:0002078,7.18e-10,45;CL:0000048,3.30e-09,427;CL:0000115,4.48e-09,36;CL:0000034,4.59e-09,441;CL:0000723,4.70e-09,433;CL:0000213,6.28e-09,58;CL:0000215,6.28e-09,58;CL:0000066,5.44e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;7.05e-09;43 | |ontology_enrichment_development_v019=CL:0000514;7.05e-09;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!5.45e-13!216;UBERON:0000486!1.26e-12!82;UBERON:0002049!2.31e-12!79;UBERON:0007798!2.31e-12!79;UBERON:0000926!5.97e-12!448;UBERON:0004120!5.97e-12!448;UBERON:0006603!5.97e-12!448;UBERON:0000055!3.99e-11!69;UBERON:0002204!8.08e-11!167;UBERON:0001637!1.01e-10!42;UBERON:0003509!1.01e-10!42;UBERON:0004572!1.01e-10!42;UBERON:0004290!1.91e-10!70;UBERON:0001981!6.05e-10!60;UBERON:0007500!6.05e-10!60;UBERON:0004537!6.05e-10!60;UBERON:0006965!6.05e-10!60;UBERON:0004872!1.25e-09!84;UBERON:0001134!2.65e-09!61;UBERON:0002036!2.65e-09!61;UBERON:0003082!2.65e-09!61;UBERON:0000914!3.36e-09!83;UBERON:0002329!3.36e-09!83;UBERON:0003077!3.36e-09!83;UBERON:0003059!3.36e-09!83;UBERON:0007282!3.36e-09!83;UBERON:0009618!3.36e-09!83;UBERON:0007285!3.36e-09!83;UBERON:0004535!1.11e-08!110;UBERON:0002385!2.18e-08!63;UBERON:0001015!2.18e-08!63;UBERON:0000383!2.18e-08!63;UBERON:0004573!4.24e-08!33;UBERON:0004571!4.24e-08!33;UBERON:0003914!1.24e-07!118;UBERON:0001009!1.28e-07!113;UBERON:0005256!2.11e-07!143;UBERON:0002100!8.20e-07!216 | |ontology_enrichment_uberon=UBERON:0003081!5.45e-13!216;UBERON:0000486!1.26e-12!82;UBERON:0002049!2.31e-12!79;UBERON:0007798!2.31e-12!79;UBERON:0000926!5.97e-12!448;UBERON:0004120!5.97e-12!448;UBERON:0006603!5.97e-12!448;UBERON:0000055!3.99e-11!69;UBERON:0002204!8.08e-11!167;UBERON:0001637!1.01e-10!42;UBERON:0003509!1.01e-10!42;UBERON:0004572!1.01e-10!42;UBERON:0004290!1.91e-10!70;UBERON:0001981!6.05e-10!60;UBERON:0007500!6.05e-10!60;UBERON:0004537!6.05e-10!60;UBERON:0006965!6.05e-10!60;UBERON:0004872!1.25e-09!84;UBERON:0001134!2.65e-09!61;UBERON:0002036!2.65e-09!61;UBERON:0003082!2.65e-09!61;UBERON:0000914!3.36e-09!83;UBERON:0002329!3.36e-09!83;UBERON:0003077!3.36e-09!83;UBERON:0003059!3.36e-09!83;UBERON:0007282!3.36e-09!83;UBERON:0009618!3.36e-09!83;UBERON:0007285!3.36e-09!83;UBERON:0004535!1.11e-08!110;UBERON:0002385!2.18e-08!63;UBERON:0001015!2.18e-08!63;UBERON:0000383!2.18e-08!63;UBERON:0004573!4.24e-08!33;UBERON:0004571!4.24e-08!33;UBERON:0003914!1.24e-07!118;UBERON:0001009!1.28e-07!113;UBERON:0005256!2.11e-07!143;UBERON:0002100!8.20e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.04e-07;42!UBERON:0003509;1.04e-07;42!UBERON:0004572;1.04e-07;42!UBERON:0007500;2.03e-07;56!UBERON:0001981;2.03e-07;56!UBERON:0004537;2.03e-07;56!UBERON:0004573;2.32e-07;33!UBERON:0004571;2.32e-07;33!UBERON:0003914;6.32e-07;74 | |ontology_enrichment_uberon_v019=UBERON:0001637;1.04e-07;42!UBERON:0003509;1.04e-07;42!UBERON:0004572;1.04e-07;42!UBERON:0007500;2.03e-07;56!UBERON:0001981;2.03e-07;56!UBERON:0004537;2.03e-07;56!UBERON:0004573;2.32e-07;33!UBERON:0004571;2.32e-07;33!UBERON:0003914;6.32e-07;74 | ||
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4298014,83.6683764911438 | ||
|short_description=p1@PGLS | |short_description=p1@PGLS | ||
}} | }} |
Latest revision as of 12:27, 16 September 2015
Short description: | p1@PGLS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGLS_5end |
Coexpression cluster: | C385_Mesenchymal_Alveolar_Osteoblast_Smooth_Renal_Placental_Fibroblast |
Association with transcript: | 0bp_to_ENST00000252603, NM_012088, uc002ngw.2_5end |
EntrezGene: | PGLS |
HGNC: | 8903 |
UniProt: | O95336 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.15e-19 | 250 |
mesodermal cell | 1.89e-19 | 121 |
smooth muscle cell | 5.91e-12 | 43 |
smooth muscle myoblast | 5.91e-12 | 43 |
electrically responsive cell | 7.27e-11 | 61 |
electrically active cell | 7.27e-11 | 61 |
vascular associated smooth muscle cell | 7.80e-11 | 32 |
muscle precursor cell | 9.59e-11 | 58 |
myoblast | 9.59e-11 | 58 |
multi-potent skeletal muscle stem cell | 9.59e-11 | 58 |
muscle cell | 1.34e-10 | 55 |
meso-epithelial cell | 7.18e-10 | 45 |
multi fate stem cell | 3.30e-09 | 427 |
endothelial cell | 4.48e-09 | 36 |
stem cell | 4.59e-09 | 441 |
somatic stem cell | 4.70e-09 | 433 |
lining cell | 6.28e-09 | 58 |
barrier cell | 6.28e-09 | 58 |
epithelial cell | 5.44e-07 | 253 |