FFCP PHASE1:Hg19::chr5:160718395..160718404,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:160718395..160718404,-
|short_description=p22@GABRB2
|description=CAGE_peak_22_at_GABRB2_5end
|association_with_transcript=197bp_to_BC036592_5end
|EntrezG...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2561 | |EntrezGene=2561 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4082 | |HGNC=4082 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=197bp_to_BC036592_5end | |||
|cluster_id=chr5:160718395..160718404,- | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_22_at_GABRB2_5end | |||
|id=chr5:160718395..160718404,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.96e-34;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!2.83e-61!32;UBERON:0002020!1.16e-57!34;UBERON:0003528!1.16e-57!34;UBERON:0001893!1.34e-57!34;UBERON:0002791!1.35e-52!33;UBERON:0002619!6.40e-52!22;UBERON:0002780!1.72e-47!41;UBERON:0001890!1.72e-47!41;UBERON:0006240!1.72e-47!41;UBERON:0001049!2.67e-47!57;UBERON:0005068!2.67e-47!57;UBERON:0006241!2.67e-47!57;UBERON:0007135!2.67e-47!57;UBERON:0003080!2.58e-46!42;UBERON:0000956!1.14e-45!25;UBERON:0000203!1.14e-45!25;UBERON:0001017!1.25e-42!82;UBERON:0002616!6.75e-41!59;UBERON:0001950!1.19e-40!20;UBERON:0005743!1.62e-40!86;UBERON:0000955!5.22e-38!69;UBERON:0006238!5.22e-38!69;UBERON:0000073!2.14e-36!94;UBERON:0001016!2.14e-36!94;UBERON:0003075!1.03e-33!86;UBERON:0007284!1.03e-33!86;UBERON:0002346!4.56e-32!90;UBERON:0003056!3.60e-31!61;UBERON:0000200!9.57e-31!6;UBERON:0007023!2.57e-27!115;UBERON:0000349!9.14e-24!5;UBERON:0002771!7.60e-23!3;UBERON:0001871!9.47e-23!7;UBERON:0000033!2.26e-22!123;UBERON:0000153!3.57e-21!129;UBERON:0007811!3.57e-21!129;UBERON:0004121!8.57e-19!169;UBERON:0000924!2.83e-18!173;UBERON:0006601!2.83e-18!173;UBERON:0000369!2.87e-17!4;UBERON:0002435!2.87e-17!4;UBERON:0000204!2.87e-17!4;UBERON:0010082!2.87e-17!4;UBERON:0001870!1.60e-16!2;UBERON:0001954!5.41e-16!2;UBERON:0003022!5.41e-16!2;UBERON:0002421!5.41e-16!2;UBERON:0002600!5.41e-16!2;UBERON:0002420!2.44e-13!9;UBERON:0007245!2.44e-13!9;UBERON:0010009!2.44e-13!9;UBERON:0010011!2.44e-13!9;UBERON:0000454!2.44e-13!9;UBERON:0002308!2.69e-13!9;UBERON:0000125!2.69e-13!9;UBERON:0000025!1.69e-11!194;UBERON:0005383!5.15e-11!3;UBERON:0005382!5.15e-11!3;UBERON:0009663!4.21e-10!7;UBERON:0002702!3.58e-09!1;UBERON:0003112!4.89e-09!1;UBERON:0000032!4.89e-09!1;UBERON:0005253!4.89e-09!1;UBERON:0003128!4.89e-09!1;UBERON:0002241!4.89e-09!1;UBERON:0001703!4.89e-09!1;UBERON:0004761!4.89e-09!1;UBERON:0009617!4.89e-09!1;UBERON:0001874!6.65e-09!1;UBERON:0000064!1.38e-08!219;UBERON:0004111!1.54e-08!241;UBERON:0001882!1.65e-08!1;UBERON:0005403!1.65e-08!1;UBERON:0007190!2.06e-08!1;UBERON:0000477!1.50e-07!286;UBERON:0002021!5.91e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002771;2.74e-50;2!UBERON:0000200;7.67e-18;6!UBERON:0002037;9.07e-18;6!UBERON:0001871;1.65e-15;6!UBERON:0002680;2.45e-12;9!UBERON:0001895;2.45e-12;9!UBERON:0004733;1.33e-09;12!UBERON:0002028;1.33e-09;12!UBERON:0004732;5.70e-09;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,2.74e-50,2;UBERON:0000200,7.67e-18,6;UBERON:0002037,9.07e-18,6;UBERON:0006215,9.07e-18,6;UBERON:0001871,1.65e-15,6;UBERON:0002680,2.45e-12,9;UBERON:0001895,2.45e-12,9;UBERON:0010092,2.45e-12,9;UBERON:0004733,1.33e-09,12;UBERON:0002028,1.33e-09,12;UBERON:0007277,1.33e-09,12;UBERON:0004732,5.70e-09,13;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0003076,5.93e-08,15;UBERON:0003057,5.93e-08,15;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,1.52581736317083,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,2.56255156294123,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.638535436228605,0.205116364240755,0,0,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,1.52581736317083,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,2.56255156294123,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.638535436228605,0.205116364240755,0,0,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p22@GABRB2 | |||
}} | }} |
Latest revision as of 16:54, 16 September 2015
Short description: | p22@GABRB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_GABRB2_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 197bp_to_BC036592_5end |
EntrezGene: | GABRB2 |
HGNC: | 4082 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 2.74e-50 | 2 |
gyrus | 7.67e-18 | 6 |
cerebellum | 9.07e-18 | 6 |
rhombic lip | 9.07e-18 | 6 |
temporal lobe | 1.65e-15 | 6 |
regional part of metencephalon | 2.45e-12 | 9 |
metencephalon | 2.45e-12 | 9 |
future metencephalon | 2.45e-12 | 9 |
segmental subdivision of hindbrain | 1.33e-09 | 12 |
hindbrain | 1.33e-09 | 12 |
presumptive hindbrain | 1.33e-09 | 12 |
segmental subdivision of nervous system | 5.70e-09 | 13 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
posterior neural tube | 5.93e-08 | 15 |
chordal neural plate | 5.93e-08 | 15 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |