FFCP PHASE1:Hg19::chr2:120302055..120302064,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:120302055..120302064,+
|short_description=p3@PCDP1
|description=CAGE_peak_3_at_PCDP1_5end
|association_with_transcript=8bp_to_uc002tmb.2,uc010yyq.1_5end
|...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=200373 | |EntrezGene=200373 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_uc002tmb.2,uc010yyq.1_5end | |||
|cluster_id=chr2:120302055..120302064,+ | |||
|description=CAGE_peak_3_at_PCDP1_5end | |||
|id=chr2:120302055..120302064,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003918;4.04e-08;10!UBERON:0007687;4.04e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.98e-41!115;UBERON:0001049!5.96e-35!57;UBERON:0005068!5.96e-35!57;UBERON:0006241!5.96e-35!57;UBERON:0007135!5.96e-35!57;UBERON:0005743!3.27e-32!86;UBERON:0002616!2.53e-31!59;UBERON:0001017!1.10e-30!82;UBERON:0000955!1.19e-30!69;UBERON:0006238!1.19e-30!69;UBERON:0002780!9.20e-30!41;UBERON:0001890!9.20e-30!41;UBERON:0006240!9.20e-30!41;UBERON:0000073!9.77e-30!94;UBERON:0001016!9.77e-30!94;UBERON:0003080!7.12e-29!42;UBERON:0001893!9.02e-29!34;UBERON:0002020!1.61e-28!34;UBERON:0003528!1.61e-28!34;UBERON:0001869!1.71e-28!32;UBERON:0002791!6.01e-27!33;UBERON:0002619!2.85e-26!22;UBERON:0001950!3.76e-26!20;UBERON:0003075!1.01e-25!86;UBERON:0007284!1.01e-25!86;UBERON:0002346!4.44e-24!90;UBERON:0000956!1.31e-22!25;UBERON:0000203!1.31e-22!25;UBERON:0003056!1.06e-20!61;UBERON:0000033!8.10e-17!123;UBERON:0000153!1.24e-16!129;UBERON:0007811!1.24e-16!129;UBERON:0000200!1.49e-13!6;UBERON:0004121!2.15e-11!169;UBERON:0000924!7.07e-11!173;UBERON:0006601!7.07e-11!173;UBERON:0000025!1.24e-10!194;UBERON:0001871!4.14e-09!7;UBERON:0002298!1.23e-08!8;UBERON:0000475!1.09e-07!365;UBERON:0002771!1.43e-07!3;UBERON:0002021!1.48e-07!5;UBERON:0004733!1.81e-07!12;UBERON:0002028!1.81e-07!12;UBERON:0007277!1.81e-07!12;UBERON:0001872!1.97e-07!5;UBERON:0003076!2.00e-07!15;UBERON:0003057!2.00e-07!15;UBERON:0002308!2.24e-07!9;UBERON:0000125!2.24e-07!9;UBERON:0000481!3.87e-07!347;UBERON:0000483!5.17e-07!309;UBERON:0004111!7.31e-07!241;UBERON:0000119!8.01e-07!312;UBERON:0004732!8.34e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0007190;3.25e-19;1!UBERON:0000200;6.50e-13;6!UBERON:0002771;2.72e-10;2!UBERON:0001905;2.72e-10;2!UBERON:0002757;2.72e-10;2!UBERON:0010134;2.72e-10;2!UBERON:0005408;2.72e-10;2!UBERON:0001899;2.72e-10;2!UBERON:0001950;1.97e-08;20!UBERON:0001893;3.74e-08;34!UBERON:0002780;8.27e-08;41!UBERON:0001890;8.27e-08;41!UBERON:0001869;9.30e-08;32!UBERON:0002619;9.55e-08;22!UBERON:0000956;6.49e-07;25!UBERON:0000203;6.49e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007190,2.25e-19,1;UBERON:0000200,5.76e-13,6;UBERON:0002780,7.69e-11,41;UBERON:0001890,7.69e-11,41;UBERON:0003080,7.69e-11,41;UBERON:0006240,7.69e-11,41;UBERON:0002771,2.72e-10,2;UBERON:0001905,3.58e-10,2;UBERON:0002757,3.58e-10,2;UBERON:0010134,3.58e-10,2;UBERON:0005408,3.58e-10,2;UBERON:0001899,3.58e-10,2;UBERON:0000955,3.55e-09,68;UBERON:0006238,3.55e-09,68;UBERON:0001869,3.81e-09,32;UBERON:0001893,1.22e-08,34;UBERON:0000073,1.93e-08,53;UBERON:0002616,1.93e-08,53;UBERON:0001950,2.00e-08,20;UBERON:0001049,5.34e-08,56;UBERON:0005068,5.34e-08,56;UBERON:0006241,5.34e-08,56;UBERON:0007135,5.34e-08,56;UBERON:0002619,9.66e-08,22;UBERON:0001017,1.05e-07,81;UBERON:0003056,2.36e-07,61;UBERON:0001016,6.25e-07,89;UBERON:0000956,6.56e-07,25;UBERON:0000203,6.56e-07,25 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0.512900250232778,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,3.99227596002388,0,0,0,0,0,0,0.344743373241465,0,0,0.885741385813839,0.120596438625408,0,0,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0.886351143382302,0.391102765469606,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.393709926058995,0,0,0.272406812223151,0.160753148465019,0,0,0,0,0.242998226632099,0,1.02447419488958,0.472091293214983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.258565912723101,0.26446520348538,0,0,0.533937062838473,2.82967749179399,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0,0.157054096250234,0.886068179966986,0.854183854313742,0.500763722825999,0.573409195690071,0.110929051536852,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79369063011563,0,0,1.10606748921385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0,0,0,0,0,0,0,0.449604575675217,4.25089728976755,0.798169295285756,0.615349092722265,0,0.414943514785307,0.807378228159255,0,0,0,0,0,0,0,0,0.225630985047772,0,0.781514011233092,0,0,0,1.35075169236789,2.34323429584154,0.413373593002368,0.760989722326882,0,0,0,0,0,0,1.00885116665647,0,0.682986574053893,0,0,0,0.747667062745149,0.526182188502793,0.118193840883968,0,0,0,0,0,1.07963795609311,0.47775168788705,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0.782988022584546,0,0.121917924982269,0,0.102662806856247,0,0,0,0,0.118920090777569,0,0,0,0.154348316215889,0.655678681511872,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.611923411718232,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0,0,0,0,0.985123076837112,0.267964130156178,0,0,0,0.714193294391221,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0.286888821570705,0.332660356546013,0,0.213454691755431,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0.512900250232778,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,3.99227596002388,0,0,0,0,0,0,0.344743373241465,0,0,0.885741385813839,0.120596438625408,0,0,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0.886351143382302,0.391102765469606,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.393709926058995,0,0,0.272406812223151,0.160753148465019,0,0,0,0,0.242998226632099,0,1.02447419488958,0.472091293214983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.258565912723101,0.26446520348538,0,0,0.533937062838473,2.82967749179399,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0,0.157054096250234,0.886068179966986,0.854183854313742,0.500763722825999,0.573409195690071,0.110929051536852,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79369063011563,0,0,1.10606748921385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0,0,0,0,0,0,0,0.449604575675217,4.25089728976755,0.798169295285756,0.615349092722265,0,0.414943514785307,0.807378228159255,0,0,0,0,0,0,0,0,0.225630985047772,0,0.781514011233092,0,0,0,1.35075169236789,2.34323429584154,0.413373593002368,0.760989722326882,0,0,0,0,0,0,1.00885116665647,0,0.682986574053893,0,0,0,0.747667062745149,0.526182188502793,0.118193840883968,0,0,0,0,0,1.07963795609311,0.47775168788705,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0.782988022584546,0,0.121917924982269,0,0.102662806856247,0,0,0,0,0.118920090777569,0,0,0,0.154348316215889,0.655678681511872,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.611923411718232,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0,0,0,0,0.985123076837112,0.267964130156178,0,0,0,0.714193294391221,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0.286888821570705,0.332660356546013,0,0.213454691755431,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p3@PCDP1 | |||
}} | }} |
Latest revision as of 17:03, 16 September 2015
Short description: | p3@PCDP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PCDP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_uc002tmb.2, uc010yyq.1_5end |
EntrezGene: | PCDP1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
paracentral gyrus | 2.25e-19 | 1 |
gyrus | 5.76e-13 | 6 |
regional part of forebrain | 7.69e-11 | 41 |
forebrain | 7.69e-11 | 41 |
anterior neural tube | 7.69e-11 | 41 |
future forebrain | 7.69e-11 | 41 |
middle temporal gyrus | 2.72e-10 | 2 |
pineal body | 3.58e-10 | 2 |
regional part of epithalamus | 3.58e-10 | 2 |
secretory circumventricular organ | 3.58e-10 | 2 |
circumventricular organ | 3.58e-10 | 2 |
epithalamus | 3.58e-10 | 2 |
brain | 3.55e-09 | 68 |
future brain | 3.55e-09 | 68 |
cerebral hemisphere | 3.81e-09 | 32 |
telencephalon | 1.22e-08 | 34 |
regional part of nervous system | 1.93e-08 | 53 |
regional part of brain | 1.93e-08 | 53 |
neocortex | 2.00e-08 | 20 |
neural tube | 5.34e-08 | 56 |
neural rod | 5.34e-08 | 56 |
future spinal cord | 5.34e-08 | 56 |
neural keel | 5.34e-08 | 56 |
regional part of cerebral cortex | 9.66e-08 | 22 |
central nervous system | 1.05e-07 | 81 |
pre-chordal neural plate | 2.36e-07 | 61 |
nervous system | 6.25e-07 | 89 |
cerebral cortex | 6.56e-07 | 25 |
pallium | 6.56e-07 | 25 |