FFCP PHASE1:Hg19::chr5:161274731..161274747,+: Difference between revisions
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|id=chr5:161274731..161274747,+
|short_description=p11@GABRA1
|description=CAGE_peak_11_at_GABRA1_5end
|association_with_transcript=46bp_to_ENST00000428797,NM_00112...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2554 | |EntrezGene=2554 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4075 | |HGNC=4075 | ||
|TSSclassifier=strong | |||
|UniProt=P14867 | |UniProt=P14867 | ||
|association_with_transcript=46bp_to_ENST00000428797,NM_001127643,uc010jix.2_5end | |||
|cluster_id=chr5:161274731..161274747,+ | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_11_at_GABRA1_5end | |||
|id=chr5:161274731..161274747,+ | |||
|ontology_enrichment_celltype=CL:0002242!1.75e-07!1;CL:0000228!1.75e-07!1;CL:0002372!1.75e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000228;1.78e-29;1!CL:0002372;1.78e-29;1!CL:0000056;2.11e-08;4!CL:0000737;2.11e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,1.78e-29,1;CL:0002372,1.78e-29,1;CL:0000737,2.11e-08,4;CL:0000515,2.11e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000515;2.11e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p11@GABRA1 | |||
}} | }} |
Latest revision as of 17:18, 16 September 2015
Short description: | p11@GABRA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_GABRA1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 46bp_to_ENST00000428797, NM_001127643, uc010jix.2_5end |
EntrezGene: | GABRA1 |
HGNC: | 4075 |
UniProt: | P14867 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 1.78e-29 | 1 |
myotube | 1.78e-29 | 1 |
striated muscle cell | 2.11e-08 | 4 |
skeletal muscle myoblast | 2.11e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
insula | 1.33e-29 | 1 |
paracentral gyrus | 4.20e-29 | 1 |
neocortex | 5.19e-22 | 20 |
cerebral hemisphere | 1.12e-21 | 32 |
telencephalon | 1.83e-20 | 34 |
regional part of cerebral cortex | 3.75e-20 | 22 |
cerebral cortex | 6.73e-18 | 25 |
pallium | 6.73e-18 | 25 |
regional part of forebrain | 3.96e-17 | 41 |
forebrain | 3.96e-17 | 41 |
anterior neural tube | 3.96e-17 | 41 |
future forebrain | 3.96e-17 | 41 |
brain | 8.54e-15 | 68 |
future brain | 8.54e-15 | 68 |
regional part of telencephalon | 3.18e-14 | 32 |
brain grey matter | 1.92e-13 | 34 |
gray matter | 1.92e-13 | 34 |
regional part of nervous system | 2.07e-13 | 53 |
regional part of brain | 2.07e-13 | 53 |
neural tube | 1.00e-12 | 56 |
neural rod | 1.00e-12 | 56 |
future spinal cord | 1.00e-12 | 56 |
neural keel | 1.00e-12 | 56 |
central nervous system | 1.61e-12 | 81 |
pre-chordal neural plate | 1.00e-11 | 61 |
nervous system | 2.56e-11 | 89 |
frontal cortex | 7.42e-11 | 3 |
adult organism | 3.60e-09 | 114 |
neural plate | 7.78e-09 | 82 |
presumptive neural plate | 7.78e-09 | 82 |
neurectoderm | 1.93e-08 | 86 |
ecto-epithelium | 4.92e-07 | 104 |
occipital lobe | 6.04e-07 | 5 |
parietal lobe | 6.39e-07 | 5 |