FFCP PHASE1:Hg19::chr9:140506925..140506963,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92714 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28633 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=21bp_to_ENST00000497877_5end | |||
|cluster_id=chr9:140506925..140506963,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_3_at_ARRDC1_5end | |||
|id=chr9:140506925..140506963,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.64e-32!254;CL:0002076!2.34e-25!43;CL:0000223!1.12e-18!59;CL:0002368!3.94e-13!13;CL:0002251!2.39e-11!21;CL:0002202!2.38e-09!9;CL:0002632!2.38e-09!9;CL:0000076!1.16e-08!62;CL:0002159!1.38e-07!13;CL:0000082!7.69e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.77e-23;42!CL:0002368;6.70e-17;13!CL:0002251;8.10e-15;20!CL:0002159;2.39e-12;14!CL:0002202;2.29e-10;9!CL:0002632;2.29e-10;9!CL:0002327;1.60e-09;4!CL:0000349;2.11e-09;19!CL:0000622;8.70e-09;5!CL:0000244;1.04e-08;4!CL:0000731;1.04e-08;4!CL:0002577;1.80e-07;3!CL:0000154;3.00e-07;6!CL:0002328;3.69e-07;3!CL:0000307;7.06e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.16e-30,42;CL:0000066,7.75e-28,253;CL:0000223,3.45e-21,58;CL:0002368,6.57e-17,13;CL:0002251,1.11e-14,20;CL:0002159,2.51e-12,14;CL:0002202,2.18e-10,9;CL:0002632,2.18e-10,9;CL:0002327,1.60e-09,4;CL:0000349,2.08e-09,19;CL:0000244,1.04e-08,4;CL:0000731,1.04e-08,4;CL:0000622,1.06e-08,5;CL:0002577,1.80e-07,3;CL:0000154,3.51e-07,6;CL:0002328,3.73e-07,3;CL:0000068,6.74e-07,3;CL:0000069,6.74e-07,3;CL:0000307,6.74e-07,3;CL:0000377,6.74e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;2.87e-11;58!CL:0000377;7.06e-07;3 | |||
|ontology_enrichment_disease=DOID:305!2.66e-13!106;DOID:1749!4.23e-09!14;DOID:0050687!5.96e-09!143;DOID:299!3.83e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.04e-09;14!DOID:5093;1.15e-08;4!DOID:1612;1.15e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.55e-09,14;DOID:5093,1.12e-08,4;DOID:1612,1.12e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.96e-21!169;UBERON:0000925!2.96e-21!169;UBERON:0006595!2.96e-21!169;UBERON:0001004!1.77e-16!72;UBERON:0000464!1.38e-15!104;UBERON:0001007!3.81e-14!155;UBERON:0001555!3.81e-14!155;UBERON:0007026!3.81e-14!155;UBERON:0000077!1.62e-13!130;UBERON:0000466!8.23e-13!126;UBERON:0000065!1.77e-11!53;UBERON:0004921!3.41e-11!129;UBERON:0004185!3.41e-11!129;UBERON:0005631!1.16e-10!14;UBERON:0000158!1.16e-10!14;UBERON:0005153!3.35e-10!37;UBERON:0000915!2.66e-09!52;UBERON:0001041!2.86e-09!98;UBERON:0009569!3.32e-09!113;UBERON:0005911!3.96e-09!82;UBERON:0000072!4.00e-09!46;UBERON:0005157!6.70e-09!51;UBERON:0008947!1.39e-08!38;UBERON:0003258!1.39e-08!38;UBERON:0005178!1.67e-08!34;UBERON:0002224!1.67e-08!34;UBERON:0002553!1.95e-08!70;UBERON:0000161!3.22e-08!35;UBERON:0000166!3.50e-08!21;UBERON:0003124!3.77e-08!7;UBERON:0005181!4.56e-08!35;UBERON:0007196!1.58e-07!14;UBERON:0001558!1.58e-07!14;UBERON:0004923!1.66e-07!57;UBERON:0004807!2.14e-07!28;UBERON:0000058!3.36e-07!26;UBERON:0000064!6.08e-07!219;UBERON:0004802!7.69e-07!19;UBERON:0000115!7.69e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.44e-10;24!UBERON:0005631;1.07e-09;10!UBERON:0000158;1.07e-09;10!UBERON:0001911;1.60e-09;4!UBERON:0004807;1.78e-09;22!UBERON:0005178;2.28e-09;34!UBERON:0002224;2.28e-09;34!UBERON:0005911;3.34e-09;36!UBERON:0001987;8.29e-09;4!UBERON:0001041;2.50e-08;14!UBERON:0005181;2.89e-08;35!UBERON:0000161;1.65e-07;19!UBERON:0000166;1.65e-07;19!UBERON:0000305;1.74e-07;7!UBERON:0000486;2.96e-07;12!UBERON:0004815;3.69e-07;3!UBERON:0002031;3.69e-07;3!UBERON:0007196;3.71e-07;15!UBERON:0001558;3.71e-07;15!UBERON:0000365;6.32e-07;5!UBERON:0001044;7.91e-07;6!UBERON:0003293;7.91e-07;6!UBERON:0003294;7.91e-07;6!UBERON:0010047;7.91e-07;6!UBERON:0003408;7.91e-07;6!UBERON:0000167;7.91e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.21e-19,160;UBERON:0000925,4.21e-19,160;UBERON:0006595,4.21e-19,160;UBERON:0005631,2.47e-16,14;UBERON:0000158,2.47e-16,14;UBERON:0001004,8.66e-14,74;UBERON:0003124,1.22e-10,7;UBERON:0005153,1.55e-10,37;UBERON:0001007,1.70e-10,145;UBERON:0001555,1.70e-10,145;UBERON:0007026,1.70e-10,145;UBERON:0005178,7.09e-10,34;UBERON:0002224,7.09e-10,34;UBERON:0000478,8.14e-10,24;UBERON:0005157,1.02e-09,47;UBERON:0001911,1.60e-09,4;UBERON:0005333,1.60e-09,4;UBERON:0008425,1.60e-09,4;UBERON:0005311,1.60e-09,4;UBERON:0005181,1.78e-09,35;UBERON:0000915,3.78e-09,52;UBERON:0001987,7.92e-09,4;UBERON:0004340,7.92e-09,4;UBERON:0004175,2.16e-08,25;UBERON:0004921,2.44e-08,118;UBERON:0005911,5.56e-08,82;UBERON:0000166,1.61e-07,22;UBERON:0000065,1.68e-07,54;UBERON:0000305,1.73e-07,7;UBERON:0001041,1.91e-07,87;UBERON:0007196,3.36e-07,15;UBERON:0001558,3.36e-07,15;UBERON:0004815,3.73e-07,3;UBERON:0002031,3.73e-07,3;UBERON:0000365,6.33e-07,5;UBERON:0004807,6.94e-07,28;UBERON:0001044,7.87e-07,6;UBERON:0003293,7.87e-07,6;UBERON:0003294,7.87e-07,6;UBERON:0010047,7.87e-07,6;UBERON:0000167,7.87e-07,6 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,1.0007329835313,0,0,0,0,0,2.45733936501509,19.538432703228,30.5817920982241,25.0578629317031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,30.3409004078046,25.301297177373,12.9413903558376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0,16.3932879731644,10.0111799551796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.1354799292738,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,1.06748995729705,0,0.311211035399766,0,0,0,0,0,0,0.570471821544449,0,0,0,0.140450806702248,0,0,0,0,0,0,0.718618141816238,0,0,0.277064115484183,0,0,0,0.113432183160021,0.358779271377724,0,0,0.600182192168805,0,0,0,0.675105328965065,0,0.504867548488229,0,0,0,0,0.169560592310488,5.9910864480622,6.54590689418003,4.58887352622406,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0,0,0.769494313892781,0,0,0,1.47008711385542,0,0,0,0,3.07471096357784,0,14.5967879593472,35.9685610424383,18.0952150340936,6.85154494173119,0,0,0,0,0,0,0,0,15.8040879591855,8.58486162094873,0,0,0,8.43604505880993,6.55130299975552,3.26082723657489,40.4804522616874,49.6984034858875,49.8397482914775,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,1.41849132023278,0,0,0,0,0,0,0,0,0.871533458600294,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,1.03473071292505,0,0.368738337083406,0,0,0,0,0,0,24.8564608585933,63.2454670139889,52.918301332694,0.496215615637554,0.153461973288062,0,0.256278298511402,0.511707249066704,0.321707842287215,1.48418066444991,0,0,0,0,0,0.483437798366489,7.01772646061497,14.3646342739998,0,0,0,2.25599806453706,0.847168708148562,0.784349769176855,0,0.211103257785751,0,0,0,0,0.270946437543853,0.501689773854853,0.764628819135115,2.49322802678617,0.223874754722178,0,0,0.256450125116389,0,0,0.824328093181778,0,0,2.29706215198469,5.20048196829217,0,0,0,0,0,0,0,0,0,8.26424576804891,7.68760269460425,34.7106577985269,5.2602046044886,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0,0,0,0,14.8182053597289,14.7466500617873,10.8890984861323,0.282431402330337,18.9422363975341,21.9012918367913,23.5017981374438,5.28363820476007,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0.568272293612826,34.6179502869651,3.26661148915902,46.0741053148848,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0.808815160325942,1.25314822272926,0,0.394573622547734,0,0,0,0,0,5.72941074387513,76.877339996656,0,1.70690172428249,0.762760950878299,1.65471377237555,0,0,0,0,0,0,0,0,0,0,7.52888219104458,1.30815439456455,0,0,0.628303510868405,0.434589487688032,29.9861090148004,0.549585560411174,25.5856692488945,0,0,0,0,0,0,0,0,0,0.652931232636591,0.282706142867882,0,0.995261931078505,1.14994833854341,0,0,0,0,0,0,0,0,6.26126780582687,0.485560759068186,9.86461007123476,0,0,0,0,0,0,0,0.313932918407225,0,0.284609546029793,0.277349346026277,5.55391162672419,0.195984794828755,3.91766429611812,4.54289337429278,3.26773461696071,0,0,0,1.55182426381471,0,0.90392296312213,0.274083849293502,0.19871461170299,0,6.84429839571811,0.400794101257669,2.56143593687223,0.19980960958213,1.00863292007874,0,0,0,0,2.59263438078475,1.22313785466253,0.732219924186332,0,0,0,0,0,0,0,0,0,0,3.19486400798386,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,1.67717343799633,0.236417121897595,0.104909176269996,0.105600336519406,0.179287339332845,4.60596473566669,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0,2.11444506695002,1.06787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,1.41348686625211,0,0,0,0,0.110929051536852,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0.449803112163605,0.465788870628778,0,0.265841714557995,0,0,0,0,0,0.107410557042488,0,0.398095888698616,0.800055529326307,0,0,0,0.192619830407303,0.857766365499703,0.260994291965212,0,0.694567422971502,0.244736704506468,0.179088841081487,0.926404341482917,0.438568099157414,1.06013487567529,1.54331230616732,0.844712203265363,0,0.345430341731199,0,0,0,0,0,0,0,3.16968185037941,0,0,0,0,0,5.73505981649722,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8758739386241,0.11796972334774,6.23657234973709,0.231051332300676,0,0,0,0,0,0,0.523813388962845,0.818859587550484,2.06998520703863,0,0,0,0,0,1.09651553371436,0,0,2.17196126987312,0,0,0,0,2.48366636455389,0,0,0,0,0.118193840883968,1.00108261702862,0.549451649953598,0,1.68163297988273,0.913158720509496,0,0,0,0,0,0,0,3.72989095493466,2.0486217251274,2.07377898544228,1.72090943528111,0.354996002191696,0.426067023795788,4.65725755210022,2.97838929107265,0,0,0.223710863595585,4.22046004545545,18.0438528973759,0,0,0,0,0,0,0.118920090777569,0,0,0,1.00326405540328,0,0.470317296361523,0,0,0,0,0,0,0,0,0,1.07132363163395,8.82237179289229,3.12941330087756,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.639701945702943,0.23806443146374,0,0.0620747142958579,0.112131862580613,0.0636471582781649,0,1.74173398317569,0.342233301085281,0.875576689189638,1.57788851863888,0.665320713092027,0,0.106727345877715,0,0,2.34640942403454,0,1.22068853494722,0,0,0 | |||
|short_description=p3@ARRDC1 | |||
}} |
Latest revision as of 17:38, 16 September 2015
Short description: | p3@ARRDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARRDC1_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 21bp_to_ENST00000497877_5end |
EntrezGene: | ARRDC1 |
HGNC: | 28633 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.16e-30 | 42 |
epithelial cell | 7.75e-28 | 253 |
endodermal cell | 3.45e-21 | 58 |
respiratory epithelial cell | 6.57e-17 | 13 |
epithelial cell of alimentary canal | 1.11e-14 | 20 |
general ecto-epithelial cell | 2.51e-12 | 14 |
epithelial cell of tracheobronchial tree | 2.18e-10 | 9 |
epithelial cell of lower respiratory tract | 2.18e-10 | 9 |
mammary gland epithelial cell | 1.60e-09 | 4 |
extraembryonic cell | 2.08e-09 | 19 |
transitional epithelial cell | 1.04e-08 | 4 |
urothelial cell | 1.04e-08 | 4 |
acinar cell | 1.06e-08 | 5 |
placental epithelial cell | 1.80e-07 | 3 |
protein secreting cell | 3.51e-07 | 6 |
bronchial epithelial cell | 3.73e-07 | 3 |
duct epithelial cell | 6.74e-07 | 3 |
branched duct epithelial cell | 6.74e-07 | 3 |
tracheal epithelial cell | 6.74e-07 | 3 |
tracheoblast | 6.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.55e-09 | 14 |
thoracic cancer | 1.12e-08 | 4 |
breast cancer | 1.12e-08 | 4 |