FFCP PHASE1:Hg19::chr10:124895520..124895540,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=340784 | |EntrezGene=340784 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5019 | |HGNC=5019 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHT5 | |UniProt=A6NHT5 | ||
|association_with_transcript=-26bp_to_NM_001105574,uc010quc.1_5end | |association_with_transcript=-26bp_to_NM_001105574,uc010quc.1_5end | ||
|cluster_id=chr10:124895520..124895540,+ | |||
|coexpression_cluster_id=C2043 | |coexpression_cluster_id=C2043 | ||
|description=CAGE_peak_3_at_HMX3_5end | |description=CAGE_peak_3_at_HMX3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000988!5.29e-07!182 | |ontology_enrichment_celltype=CL:0000988!5.29e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000946;7.97e-10;1!CL:0000786;7.97e-10;1!CL:0002379;3.25e-09;1 | |ontology_enrichment_celltype_v019=CL:0000946;7.97e-10;1!CL:0000786;7.97e-10;1!CL:0002379;3.25e-09;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.31e-11,177;CL:0000946,7.98e-10,1;CL:0000786,7.98e-10,1;CL:0000980,7.98e-10,1;CL:0002379,2.55e-09,1;CL:0002032,1.94e-08,161;CL:0000837,1.94e-08,161;CL:0000037,5.62e-08,168;CL:0000763,4.29e-07,108;CL:0000049,4.29e-07,108 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!8.57e-16!235;DOID:14566!3.17e-15!239;DOID:1240!1.68e-14!39;DOID:8692!2.92e-14!31;DOID:2531!2.49e-13!51;DOID:0060083!2.49e-13!51;DOID:0050686!6.75e-09!137 | |ontology_enrichment_disease=DOID:162!8.57e-16!235;DOID:14566!3.17e-15!239;DOID:1240!1.68e-14!39;DOID:8692!2.92e-14!31;DOID:2531!2.49e-13!51;DOID:0060083!2.49e-13!51;DOID:0050686!6.75e-09!137 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.79e-28;31!DOID:1240;1.95e-21;39!DOID:2531;1.53e-15;51!DOID:0060083;1.53e-15;51!DOID:1036;1.09e-09;8!DOID:630;3.25e-09;1!DOID:0050177;3.25e-09;1!DOID:3620;3.25e-09;1!DOID:3565;3.25e-09;1!DOID:0050427;3.25e-09;1!DOID:2355;3.25e-09;1 | |ontology_enrichment_disease_v019=DOID:8692;1.79e-28;31!DOID:1240;1.95e-21;39!DOID:2531;1.53e-15;51!DOID:0060083;1.53e-15;51!DOID:1036;1.09e-09;8!DOID:630;3.25e-09;1!DOID:0050177;3.25e-09;1!DOID:3620;3.25e-09;1!DOID:3565;3.25e-09;1!DOID:0050427;3.25e-09;1!DOID:2355;3.25e-09;1 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,1.56e-29,31;DOID:1240,1.48e-27,39;DOID:2531,3.45e-24,51;DOID:0060083,3.45e-24,51;DOID:0050686,5.26e-12,137;DOID:1036,1.09e-09,8;DOID:630,2.16e-09,1;DOID:0050177,2.16e-09,1;DOID:0050427,2.16e-09,1;DOID:3620,2.55e-09,1;DOID:3565,2.55e-09,1;DOID:2355,5.72e-09,1;DOID:162,7.25e-09,235;DOID:14566,1.31e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.11e-19!9;UBERON:0001557!1.44e-08!19;UBERON:0008947!2.64e-08!38;UBERON:0003258!2.64e-08!38 | |ontology_enrichment_uberon=UBERON:0001737!1.11e-19!9;UBERON:0001557!1.44e-08!19;UBERON:0008947!2.64e-08!38;UBERON:0003258!2.64e-08!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.24e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0002331;1.24e-07;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.10e-07,10;UBERON:0000358,1.10e-07,10;UBERON:0000307,1.10e-07,10;UBERON:0000091,1.10e-07,10;UBERON:0000087,1.10e-07,10;UBERON:0007010,1.10e-07,10;UBERON:0007806,1.10e-07,10;UBERON:0008780,1.10e-07,10;UBERON:0005728,1.10e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0.397589304964456,0,0,0,0,0,0,0,0,0,1.0647612003586,0.842923450390509,0.241011029883482,0.882351781859152,0,0.237270619111097,0.674156540800822,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63626239701352,0.797131363644112,0,0,0,0,0,0,0,0,0,2.24823305145179,5.24679238696724,0,0,1.53620382154229,1.11838053946208,1.16794399198336,0,0.835218521685727,1.23087398947712,3.51592382018778,0,0,0,0,0.242721043499027,0,2.55722532125772,0,0,0,0,0,0,0,0,0,0,0,0,0.861593638227486,0,0,0,2.55786185113436,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,1.04174996959975,0,0,0,0,0,0,0.544692317594951,0,0,0,0,0,0,0,0,0,0,0,0,1.80476528493745,2.15668787749514,2.18168063068596,0.948768663620925,0,0,0,0,0,0,0,0.611030144933625,1.18608451472249,1.23563938946503,1.98401704060365,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661983911750998,0,0,0,0,0,0,0,0,0.171986032471617,0.0967563312890851,0.146178634172371,0,0,0,0,0,0.19871461170299,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,1.01607998478941,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,1.6468607378872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,1.94084660514027,0,0,0,0,0,0,0,2.3658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1074013404563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.27515248846948,0,0.237840181555137,0,0.109940516745429,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9234109538194 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0.397589304964456,0,0,0,0,0,0,0,0,0,1.0647612003586,0.842923450390509,0.241011029883482,0.882351781859152,0,0.237270619111097,0.674156540800822,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63626239701352,0.797131363644112,0,0,0,0,0,0,0,0,0,2.24823305145179,5.24679238696724,0,0,1.53620382154229,1.11838053946208,1.16794399198336,0,0.835218521685727,1.23087398947712,3.51592382018778,0,0,0,0,0.242721043499027,0,2.55722532125772,0,0,0,0,0,0,0,0,0,0,0,0,0.861593638227486,0,0,0,2.55786185113436,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,1.04174996959975,0,0,0,0,0,0,0.544692317594951,0,0,0,0,0,0,0,0,0,0,0,0,1.80476528493745,2.15668787749514,2.18168063068596,0.948768663620925,0,0,0,0,0,0,0,0.611030144933625,1.18608451472249,1.23563938946503,1.98401704060365,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661983911750998,0,0,0,0,0,0,0,0,0.171986032471617,0.0967563312890851,0.146178634172371,0,0,0,0,0,0.19871461170299,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,1.01607998478941,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,1.6468607378872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,1.94084660514027,0,0,0,0,0,0,0,2.3658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1074013404563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.27515248846948,0,0.237840181555137,0,0.109940516745429,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9234109538194 | ||
|short_description=p3@HMX3 | |short_description=p3@HMX3 | ||
}} | }} |
Latest revision as of 21:03, 16 September 2015
Short description: | p3@HMX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HMX3_5end |
Coexpression cluster: | C2043_plasma_acute_biphenotypic_small_chronic_alveolar_cord |
Association with transcript: | -26bp_to_NM_001105574, uc010quc.1_5end |
EntrezGene: | HMX3 |
HGNC: | 5019 |
UniProt: | A6NHT5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.31e-11 | 177 |
antibody secreting cell | 7.98e-10 | 1 |
plasma cell | 7.98e-10 | 1 |
plasmablast | 7.98e-10 | 1 |
meningothelial cell | 2.55e-09 | 1 |
hematopoietic oligopotent progenitor cell | 1.94e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.94e-08 | 161 |
hematopoietic stem cell | 5.62e-08 | 168 |
myeloid cell | 4.29e-07 | 108 |
common myeloid progenitor | 4.29e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.10e-07 | 10 |
blastocyst | 1.10e-07 | 10 |
blastula | 1.10e-07 | 10 |
bilaminar disc | 1.10e-07 | 10 |
inner cell mass | 1.10e-07 | 10 |
cleaving embryo | 1.10e-07 | 10 |
connecting stalk | 1.10e-07 | 10 |
inner cell mass derived epiblast | 1.10e-07 | 10 |
extraembryonic mesoderm | 1.10e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.56e-29 | 31 |
leukemia | 1.48e-27 | 39 |
hematologic cancer | 3.45e-24 | 51 |
immune system cancer | 3.45e-24 | 51 |
organ system cancer | 5.26e-12 | 137 |
chronic leukemia | 1.09e-09 | 8 |
genetic disease | 2.16e-09 | 1 |
monogenic disease | 2.16e-09 | 1 |
xeroderma pigmentosum | 2.16e-09 | 1 |
central nervous system cancer | 2.55e-09 | 1 |
meningioma | 2.55e-09 | 1 |
anemia | 5.72e-09 | 1 |
cancer | 7.25e-09 | 235 |
disease of cellular proliferation | 1.31e-08 | 239 |