FFCP PHASE1:Hg19::chr4:176828307..176828316,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2823 | |EntrezGene=2823 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4460 | |HGNC=4460 | ||
|TSSclassifier=strong | |||
|UniProt=D6R9T7 | |UniProt=D6R9T7 | ||
|association_with_transcript=2bp_to_ENST00000513365_5end | |association_with_transcript=2bp_to_ENST00000513365_5end | ||
|cluster_id=chr4:176828307..176828316,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_35_at_GPM6A_5end | |description=CAGE_peak_35_at_GPM6A_5end | ||
|id=chr4:176828307..176828316,- | |id=chr4:176828307..176828316,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!9.88e-81!32;UBERON:0002619!7.37e-77!22;UBERON:0001893!6.99e-76!34;UBERON:0002020!1.29e-75!34;UBERON:0003528!1.29e-75!34;UBERON:0001049!3.62e-74!57;UBERON:0005068!3.62e-74!57;UBERON:0006241!3.62e-74!57;UBERON:0007135!3.62e-74!57;UBERON:0002791!1.02e-70!33;UBERON:0002780!9.98e-69!41;UBERON:0001890!9.98e-69!41;UBERON:0006240!9.98e-69!41;UBERON:0000956!1.35e-67!25;UBERON:0000203!1.35e-67!25;UBERON:0003080!4.99e-67!42;UBERON:0001950!3.48e-65!20;UBERON:0001017!2.61e-62!82;UBERON:0002616!8.57e-61!59;UBERON:0005743!3.01e-59!86;UBERON:0003075!1.20e-55!86;UBERON:0007284!1.20e-55!86;UBERON:0000955!3.48e-55!69;UBERON:0006238!3.48e-55!69;UBERON:0000073!2.80e-53!94;UBERON:0001016!2.80e-53!94;UBERON:0002346!5.56e-53!90;UBERON:0003056!3.73e-45!61;UBERON:0007023!5.07e-44!115;UBERON:0000200!2.74e-38!6;UBERON:0000033!8.77e-32!123;UBERON:0000153!4.26e-30!129;UBERON:0007811!4.26e-30!129;UBERON:0004121!8.73e-28!169;UBERON:0000924!4.92e-27!173;UBERON:0006601!4.92e-27!173;UBERON:0000349!7.35e-21!5;UBERON:0001872!7.73e-21!5;UBERON:0002771!6.39e-20!3;UBERON:0001871!6.89e-20!7;UBERON:0000025!1.57e-18!194;UBERON:0000369!1.64e-14!4;UBERON:0002435!1.64e-14!4;UBERON:0000204!1.64e-14!4;UBERON:0010082!1.64e-14!4;UBERON:0001870!1.95e-14!2;UBERON:0001954!2.70e-14!2;UBERON:0003022!2.70e-14!2;UBERON:0002421!2.70e-14!2;UBERON:0002600!2.70e-14!2;UBERON:0004111!6.29e-14!241;UBERON:0002360!3.07e-13!2;UBERON:0000094!3.07e-13!2;UBERON:0007645!3.07e-13!2;UBERON:0000477!4.84e-12!286;UBERON:0000483!7.90e-12!309;UBERON:0000064!8.61e-12!219;UBERON:0000119!1.16e-11!312;UBERON:0002021!1.37e-11!5;UBERON:0002420!3.00e-11!9;UBERON:0007245!3.00e-11!9;UBERON:0010009!3.00e-11!9;UBERON:0010011!3.00e-11!9;UBERON:0000454!3.00e-11!9;UBERON:0002308!4.04e-11!9;UBERON:0000125!4.04e-11!9;UBERON:0003076!4.87e-10!15;UBERON:0003057!4.87e-10!15;UBERON:0002240!1.97e-09!3;UBERON:0000475!3.48e-09!365;UBERON:0005383!3.54e-09!3;UBERON:0005382!3.54e-09!3;UBERON:0000988!6.05e-09!3;UBERON:0009663!1.65e-08!7;UBERON:0002702!4.28e-08!1;UBERON:0002022!7.26e-08!1;UBERON:0007190!8.84e-08!1;UBERON:0002581!1.01e-07!1;UBERON:0001882!1.48e-07!1;UBERON:0005403!1.48e-07!1;UBERON:0003112!1.69e-07!1;UBERON:0000032!1.69e-07!1;UBERON:0005253!1.69e-07!1;UBERON:0003128!1.69e-07!1;UBERON:0002241!1.69e-07!1;UBERON:0001703!1.69e-07!1;UBERON:0004761!1.69e-07!1;UBERON:0009617!1.69e-07!1;UBERON:0001874!1.80e-07!1;UBERON:0002902!2.31e-07!1;UBERON:0009899!2.31e-07!1;UBERON:0002298!2.94e-07!8;UBERON:0002363!2.98e-07!1;UBERON:0007647!2.98e-07!1;UBERON:0010115!2.98e-07!1 | |ontology_enrichment_uberon=UBERON:0001869!9.88e-81!32;UBERON:0002619!7.37e-77!22;UBERON:0001893!6.99e-76!34;UBERON:0002020!1.29e-75!34;UBERON:0003528!1.29e-75!34;UBERON:0001049!3.62e-74!57;UBERON:0005068!3.62e-74!57;UBERON:0006241!3.62e-74!57;UBERON:0007135!3.62e-74!57;UBERON:0002791!1.02e-70!33;UBERON:0002780!9.98e-69!41;UBERON:0001890!9.98e-69!41;UBERON:0006240!9.98e-69!41;UBERON:0000956!1.35e-67!25;UBERON:0000203!1.35e-67!25;UBERON:0003080!4.99e-67!42;UBERON:0001950!3.48e-65!20;UBERON:0001017!2.61e-62!82;UBERON:0002616!8.57e-61!59;UBERON:0005743!3.01e-59!86;UBERON:0003075!1.20e-55!86;UBERON:0007284!1.20e-55!86;UBERON:0000955!3.48e-55!69;UBERON:0006238!3.48e-55!69;UBERON:0000073!2.80e-53!94;UBERON:0001016!2.80e-53!94;UBERON:0002346!5.56e-53!90;UBERON:0003056!3.73e-45!61;UBERON:0007023!5.07e-44!115;UBERON:0000200!2.74e-38!6;UBERON:0000033!8.77e-32!123;UBERON:0000153!4.26e-30!129;UBERON:0007811!4.26e-30!129;UBERON:0004121!8.73e-28!169;UBERON:0000924!4.92e-27!173;UBERON:0006601!4.92e-27!173;UBERON:0000349!7.35e-21!5;UBERON:0001872!7.73e-21!5;UBERON:0002771!6.39e-20!3;UBERON:0001871!6.89e-20!7;UBERON:0000025!1.57e-18!194;UBERON:0000369!1.64e-14!4;UBERON:0002435!1.64e-14!4;UBERON:0000204!1.64e-14!4;UBERON:0010082!1.64e-14!4;UBERON:0001870!1.95e-14!2;UBERON:0001954!2.70e-14!2;UBERON:0003022!2.70e-14!2;UBERON:0002421!2.70e-14!2;UBERON:0002600!2.70e-14!2;UBERON:0004111!6.29e-14!241;UBERON:0002360!3.07e-13!2;UBERON:0000094!3.07e-13!2;UBERON:0007645!3.07e-13!2;UBERON:0000477!4.84e-12!286;UBERON:0000483!7.90e-12!309;UBERON:0000064!8.61e-12!219;UBERON:0000119!1.16e-11!312;UBERON:0002021!1.37e-11!5;UBERON:0002420!3.00e-11!9;UBERON:0007245!3.00e-11!9;UBERON:0010009!3.00e-11!9;UBERON:0010011!3.00e-11!9;UBERON:0000454!3.00e-11!9;UBERON:0002308!4.04e-11!9;UBERON:0000125!4.04e-11!9;UBERON:0003076!4.87e-10!15;UBERON:0003057!4.87e-10!15;UBERON:0002240!1.97e-09!3;UBERON:0000475!3.48e-09!365;UBERON:0005383!3.54e-09!3;UBERON:0005382!3.54e-09!3;UBERON:0000988!6.05e-09!3;UBERON:0009663!1.65e-08!7;UBERON:0002702!4.28e-08!1;UBERON:0002022!7.26e-08!1;UBERON:0007190!8.84e-08!1;UBERON:0002581!1.01e-07!1;UBERON:0001882!1.48e-07!1;UBERON:0005403!1.48e-07!1;UBERON:0003112!1.69e-07!1;UBERON:0000032!1.69e-07!1;UBERON:0005253!1.69e-07!1;UBERON:0003128!1.69e-07!1;UBERON:0002241!1.69e-07!1;UBERON:0001703!1.69e-07!1;UBERON:0004761!1.69e-07!1;UBERON:0009617!1.69e-07!1;UBERON:0001874!1.80e-07!1;UBERON:0002902!2.31e-07!1;UBERON:0009899!2.31e-07!1;UBERON:0002298!2.94e-07!8;UBERON:0002363!2.98e-07!1;UBERON:0007647!2.98e-07!1;UBERON:0010115!2.98e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0001870;7.76e-118;3!UBERON:0002702;3.49e-79;2!UBERON:0002619;4.37e-28;22!UBERON:0000200;2.72e-27;6!UBERON:0000956;6.00e-25;25!UBERON:0000203;6.00e-25;25!UBERON:0001954;4.66e-21;2!UBERON:0003022;4.66e-21;2!UBERON:0002421;4.66e-21;2!UBERON:0002600;4.66e-21;2!UBERON:0002791;5.04e-19;32!UBERON:0001869;5.04e-19;32!UBERON:0001950;9.30e-18;20!UBERON:0003528;3.24e-17;34!UBERON:0002020;3.24e-17;34!UBERON:0001893;1.14e-15;34!UBERON:0002780;5.85e-13;41!UBERON:0001890;5.85e-13;41!UBERON:0000349;2.97e-09;5!UBERON:0000073;1.43e-07;53!UBERON:0002616;1.43e-07;53!UBERON:0000955;4.94e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001870,7.78e-118,3;UBERON:0002702,3.49e-79,2;UBERON:0002619,4.07e-28,22;UBERON:0000200,2.72e-27,6;UBERON:0000956,5.65e-25,25;UBERON:0000203,5.65e-25,25;UBERON:0001954,3.81e-21,2;UBERON:0003022,3.81e-21,2;UBERON:0002421,3.81e-21,2;UBERON:0002600,3.81e-21,2;UBERON:0002791,7.42e-20,32;UBERON:0001869,7.42e-20,32;UBERON:0003528,9.09e-19,34;UBERON:0002020,9.09e-19,34;UBERON:0001893,9.09e-19,34;UBERON:0001950,9.30e-18,20;UBERON:0002780,9.03e-16,41;UBERON:0001890,9.03e-16,41;UBERON:0003080,9.03e-16,41;UBERON:0006240,9.03e-16,41;UBERON:0000955,9.02e-15,68;UBERON:0006238,9.02e-15,68;UBERON:0001017,1.45e-12,81;UBERON:0000073,1.98e-12,53;UBERON:0002616,1.98e-12,53;UBERON:0001049,8.22e-12,56;UBERON:0005068,8.22e-12,56;UBERON:0006241,8.22e-12,56;UBERON:0007135,8.22e-12,56;UBERON:0001016,2.13e-11,89;UBERON:0003056,6.50e-11,61;UBERON:0000349,2.74e-09,5;UBERON:0003075,2.59e-08,82;UBERON:0007284,2.59e-08,82;UBERON:0002346,5.87e-08,86 | |||
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|short_description=p35@GPM6A | |short_description=p35@GPM6A | ||
}} | }} |
Latest revision as of 22:05, 16 September 2015
Short description: | p35@GPM6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_GPM6A_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 2bp_to_ENST00000513365_5end |
EntrezGene: | GPM6A |
HGNC: | 4460 |
UniProt: | D6R9T7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
frontal cortex | 7.78e-118 | 3 |
middle frontal gyrus | 3.49e-79 | 2 |
regional part of cerebral cortex | 4.07e-28 | 22 |
gyrus | 2.72e-27 | 6 |
cerebral cortex | 5.65e-25 | 25 |
pallium | 5.65e-25 | 25 |
Ammon's horn | 3.81e-21 | 2 |
lobe parts of cerebral cortex | 3.81e-21 | 2 |
hippocampal formation | 3.81e-21 | 2 |
limbic lobe | 3.81e-21 | 2 |
regional part of telencephalon | 7.42e-20 | 32 |
cerebral hemisphere | 7.42e-20 | 32 |
brain grey matter | 9.09e-19 | 34 |
gray matter | 9.09e-19 | 34 |
telencephalon | 9.09e-19 | 34 |
neocortex | 9.30e-18 | 20 |
regional part of forebrain | 9.03e-16 | 41 |
forebrain | 9.03e-16 | 41 |
anterior neural tube | 9.03e-16 | 41 |
future forebrain | 9.03e-16 | 41 |
brain | 9.02e-15 | 68 |
future brain | 9.02e-15 | 68 |
central nervous system | 1.45e-12 | 81 |
regional part of nervous system | 1.98e-12 | 53 |
regional part of brain | 1.98e-12 | 53 |
neural tube | 8.22e-12 | 56 |
neural rod | 8.22e-12 | 56 |
future spinal cord | 8.22e-12 | 56 |
neural keel | 8.22e-12 | 56 |
nervous system | 2.13e-11 | 89 |
pre-chordal neural plate | 6.50e-11 | 61 |
limbic system | 2.74e-09 | 5 |
neural plate | 2.59e-08 | 82 |
presumptive neural plate | 2.59e-08 | 82 |
neurectoderm | 5.87e-08 | 86 |