FFCP PHASE1:Hg19::chr2:32489922..32489962,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58484 | |EntrezGene=58484 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16412 | |HGNC=16412 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NPP4,B3KTF0 | |UniProt=Q9NPP4,B3KTF0 | ||
|association_with_transcript=0bp_to_ENST00000402280,NM_001199138,uc002roi.2_5end | |association_with_transcript=0bp_to_ENST00000402280,NM_001199138,uc002roi.2_5end | ||
|cluster_id=chr2:32489922..32489962,- | |||
|coexpression_cluster_id=C1003 | |coexpression_cluster_id=C1003 | ||
|description=CAGE_peak_1_at_NLRC4_5end | |description=CAGE_peak_1_at_NLRC4_5end | ||
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|ontology_enrichment_celltype=CL:0000738!2.62e-47!140;CL:0002032!2.86e-47!165;CL:0000837!2.86e-47!165;CL:0000037!3.40e-47!172;CL:0000566!3.40e-47!172;CL:0000766!1.42e-46!76;CL:0000763!2.11e-46!112;CL:0000049!2.11e-46!112;CL:0002009!7.59e-46!65;CL:0002194!8.16e-45!63;CL:0000576!8.16e-45!63;CL:0000040!8.16e-45!63;CL:0000559!8.16e-45!63;CL:0002087!2.09e-42!119;CL:0000988!3.10e-42!182;CL:0000557!7.98e-40!71;CL:0002057!2.11e-38!42;CL:0000839!7.24e-38!70;CL:0002031!1.09e-36!124;CL:0000860!1.45e-34!45;CL:0002393!2.14e-09!9;CL:0002397!2.14e-09!9;CL:0000094!5.03e-08!8;CL:0000990!1.60e-07!8 | |ontology_enrichment_celltype=CL:0000738!2.62e-47!140;CL:0002032!2.86e-47!165;CL:0000837!2.86e-47!165;CL:0000037!3.40e-47!172;CL:0000566!3.40e-47!172;CL:0000766!1.42e-46!76;CL:0000763!2.11e-46!112;CL:0000049!2.11e-46!112;CL:0002009!7.59e-46!65;CL:0002194!8.16e-45!63;CL:0000576!8.16e-45!63;CL:0000040!8.16e-45!63;CL:0000559!8.16e-45!63;CL:0002087!2.09e-42!119;CL:0000988!3.10e-42!182;CL:0000557!7.98e-40!71;CL:0002057!2.11e-38!42;CL:0000839!7.24e-38!70;CL:0002031!1.09e-36!124;CL:0000860!1.45e-34!45;CL:0002393!2.14e-09!9;CL:0002397!2.14e-09!9;CL:0000094!5.03e-08!8;CL:0000990!1.60e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.43e-38;39!CL:0000234;3.43e-38;39!CL:0000860;6.91e-38;33!CL:0002057;6.91e-38;33!CL:0000576;1.33e-37;48!CL:0000766;2.77e-29;69!CL:0000763;4.55e-17;100!CL:0002087;3.49e-13;104!CL:0000738;1.08e-12;136!CL:0000094;1.65e-10;8!CL:0000235;4.07e-09;6!CL:0002393;3.67e-08;6!CL:0002397;3.67e-08;6!CL:0000988;6.81e-08;177!CL:0000081;3.84e-07;11!CL:0000990;6.43e-07;8 | |ontology_enrichment_celltype_v019=CL:0000473;3.43e-38;39!CL:0000234;3.43e-38;39!CL:0000860;6.91e-38;33!CL:0002057;6.91e-38;33!CL:0000576;1.33e-37;48!CL:0000766;2.77e-29;69!CL:0000763;4.55e-17;100!CL:0002087;3.49e-13;104!CL:0000738;1.08e-12;136!CL:0000094;1.65e-10;8!CL:0000235;4.07e-09;6!CL:0002393;3.67e-08;6!CL:0002397;3.67e-08;6!CL:0000988;6.81e-08;177!CL:0000081;3.84e-07;11!CL:0000990;6.43e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.30e-70,72;CL:0002194,1.30e-67,59;CL:0000576,1.30e-67,59;CL:0000040,1.30e-67,59;CL:0000559,1.30e-67,59;CL:0002009,3.64e-67,61;CL:0000473,3.93e-61,48;CL:0000234,3.93e-61,48;CL:0000763,1.59e-59,108;CL:0000049,1.59e-59,108;CL:0000557,2.45e-59,67;CL:0000839,2.51e-58,66;CL:0000860,3.75e-53,42;CL:0002057,3.75e-53,42;CL:0000738,1.42e-52,136;CL:0000037,1.39e-47,168;CL:0002032,7.32e-47,161;CL:0000837,7.32e-47,161;CL:0002087,1.46e-45,115;CL:0000988,1.12e-43,177;CL:0002031,1.22e-38,120;CL:0002393,1.66e-12,9;CL:0002397,1.66e-12,9;CL:0000094,1.35e-10,8;CL:0000235,4.02e-09,6;CL:0000134,9.33e-09,354;CL:0002320,3.66e-08,361;CL:0000081,3.36e-07,11;CL:0000990,5.62e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;6.77e-38;42!CL:0000049;1.63e-16;108 | |ontology_enrichment_development_v019=CL:0002057;6.77e-38;42!CL:0000049;1.63e-16;108 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.84e-43!102;UBERON:0003061!1.84e-43!102;UBERON:0007023!1.46e-41!115;UBERON:0002193!2.65e-39!112;UBERON:0002371!9.43e-34!80;UBERON:0001474!1.11e-29!86;UBERON:0002405!9.05e-25!115;UBERON:0004765!1.24e-22!101;UBERON:0001434!1.24e-22!101;UBERON:0003081!3.60e-11!216;UBERON:0001049!1.29e-10!57;UBERON:0005068!1.29e-10!57;UBERON:0006241!1.29e-10!57;UBERON:0007135!1.29e-10!57;UBERON:0000178!6.44e-09!15;UBERON:0000179!6.44e-09!15;UBERON:0000463!6.44e-09!15;UBERON:0002780!6.41e-08!41;UBERON:0001890!6.41e-08!41;UBERON:0006240!6.41e-08!41;UBERON:0002204!9.82e-08!167;UBERON:0002616!1.11e-07!59;UBERON:0000479!1.17e-07!787;UBERON:0003080!1.48e-07!42 | |ontology_enrichment_uberon=UBERON:0002390!1.84e-43!102;UBERON:0003061!1.84e-43!102;UBERON:0007023!1.46e-41!115;UBERON:0002193!2.65e-39!112;UBERON:0002371!9.43e-34!80;UBERON:0001474!1.11e-29!86;UBERON:0002405!9.05e-25!115;UBERON:0004765!1.24e-22!101;UBERON:0001434!1.24e-22!101;UBERON:0003081!3.60e-11!216;UBERON:0001049!1.29e-10!57;UBERON:0005068!1.29e-10!57;UBERON:0006241!1.29e-10!57;UBERON:0007135!1.29e-10!57;UBERON:0000178!6.44e-09!15;UBERON:0000179!6.44e-09!15;UBERON:0000463!6.44e-09!15;UBERON:0002780!6.41e-08!41;UBERON:0001890!6.41e-08!41;UBERON:0006240!6.41e-08!41;UBERON:0002204!9.82e-08!167;UBERON:0002616!1.11e-07!59;UBERON:0000479!1.17e-07!787;UBERON:0003080!1.48e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.34e-12;15!UBERON:0000179;2.34e-12;15!UBERON:0000463;2.34e-12;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;2.34e-12;15!UBERON:0000179;2.34e-12;15!UBERON:0000463;2.34e-12;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.03e-60,98;UBERON:0003061,3.03e-60,98;UBERON:0002193,2.96e-54,108;UBERON:0002371,6.45e-50,76;UBERON:0001474,8.56e-45,82;UBERON:0002405,2.50e-42,93;UBERON:0004765,4.86e-39,90;UBERON:0001434,3.61e-33,100;UBERON:0003081,7.70e-23,203;UBERON:0007023,5.73e-15,114;UBERON:0002204,7.57e-14,167;UBERON:0000178,1.80e-12,15;UBERON:0000179,1.80e-12,15;UBERON:0000463,1.80e-12,15;UBERON:0000926,1.22e-08,315;UBERON:0004120,1.22e-08,315;UBERON:0006603,1.22e-08,315;UBERON:0002384,8.50e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14691421479123,2.68680578668049,2.63187409637329,0,0,0,0.852139206383318,0.142169232487422,0,1.10799081706375,2.20598892217156,1.95309783644267,15.6740831967947,7.12566065241755,11.07574940827,33.2961966805203,25.3176882271502,18.1938045890862,15.1078873988695,6.57868620834921,4.95530193432166,1.7261543539329,2.0492856522328,4.96612682766029,8.96338769915208,5.80936215225443,2.70852973188684,23.7185347823682,16.1014628534129,13.9328560355952,9.48860066349798,9.62787081228281,3.83602275479425,8.2462825046679,7.57961898962201,6.81959600852311,7.83564944297177,2.8369261234557,4.35975574296902,5.27622197039161,2.60741459210101,4.12658804939722,6.65939452896706,4.05105399586321,3.48108626184973,19.4354863406986,18.9217826968889,15.7243984131282,15.1643652047768,21.3251187834939,18.1619912967701,20.5209175493699,23.4721679094926,25.2076532195195,3.51992488922645,2.18455444504853,3.55803701545422,2.13365111283254,2.00197993518006,1.14950487990897,3.30522436392431,0.954053754535364,0,0.587237189370939,0.382273228125229,0,1.12101712596307,1.05353633910031,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0.318565414324097,0.651083453856419,0,1.80690142893327,1.15187950038977,1.24930726552346,1.89421801635213,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,1.76821751921912,0,0,9.7364218096405,9.40300581416043,6.91381394698099,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27121669744253,15.511210565933,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.0343693469816,15.4442814991897,10.5528125224997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64871341923571,14.0631985600995,4.21667878966063,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0.773288812777695,1.17261385734044,0,7.49007023947182,2.99161459204025,11.603634376209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13536052245775,1.50999940573032,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29731237272711,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54188262097304,0,0,0,0,18.2681139323581,18.351292971417,12.5322381178316,15.9615289556719,21.3908382004821,14.9148861574325,15.6609116799053,13.4831279970026,0,0,0,1.30062222588003,0,0,0,0.798317485731266,2.8725805519855,0,1.62310970137278,0.561594356226918,2.05411211129873,0.156679895773023,0,0.338583555603207,2.89058535186659,5.24679238696724,5.96184732766457,0.343505344755765,2.45792611446766,1.78940886313933,2.50273712567863,4.68931428964897,0,0,0,0,0,0,5.56731081233197,0,0.111443384277478,0,0,0,0,0,2.2507106625682,0,0,0,1.39473591775749,2.48655523978033,0,0,0.123084805461069,0,0,0,1.02314474045374,0.394573622547734,9.57932369387759,0,1.93866549219044,1.39152147242777,0,0,0,0,0,0,0,0,0,0,0,1.68835014075571,0,0.221158519862449,0.295547618953547,0,0,0,0.384751292518985,0,0,0,0,0,0.0915975934018623,0,0,0,0.664846727600626,0,0,0,0,0.158936578980379,0,0,0,0,0.995261931078505,0.796118080530053,1.22206028986725,0,0,0,1.61762719153625,1.60515529459758,0.702793337176017,1.45963831372533,0,0,0.394584402849391,0,0,2.46427660551103,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,0.484945082442097,0,0.451961481561065,0,0,0.633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,5.06549901900374,0,0,0.525774708558629,0.279282401272254,0.687481272035051,1.43574604915363,0.399358000997982,1.28767814440971,0.669514372325618,1.00775208730089,0,0,0,0,0,0,0,2.38568906942791,1.90684768556206,0,0,0,0.449947783103001,2.32140586367385,0.728994679896296,0,1.18208560948797,0.367182116944987,0,0,0,1.42939065274673,1.98627591109629,0,0,0,0,0,0.164185041498678,0,0,0.732761168390412,0,0.904980694530854,2.51241943311111,0,0,2.56289790162467,1.72924735609633,7.45630299624952,5.95399226174341,1.38328142328561,0.243585196761792,0,0,0,0,0,0,0,0.488105059607853,1.1267183763585,1.14681839138014,3.43880059764242,1.73869928235874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93561810612423,1.94860308839388,4.11881004971426,6.37905037597792,0,0,0,0,2.8806767017418,0.861074898304078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770750701157514,1.41696576325585,3.83121261737163,0,0,0.207471757392654,0.807378228159255,1.42769420259154,0,0,0,0,0,0,0,0.82731361184183,0,0,0,0,0,0.472763092328763,0,0.620060389503552,0.380494861163441,0,0.548257766857182,0,0,0,0.535701835878287,1.3451348888753,0.606965604236632,0.91064876540519,1.1531308121143,0.115233987555779,0,1.42736439251347,0.72350050919134,0,0,0.78493092850514,1.09980912941201,0,1.82631744101899,0,0,1.1436247068265,0,0,0,0,0,0,0,0.4302273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| ||
|short_description=p1@NLRC4 | |short_description=p1@NLRC4 | ||
}} | }} |
Latest revision as of 23:11, 16 September 2015
Short description: | p1@NLRC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NLRC4_5end |
Coexpression cluster: | C1003_CD14_Whole_Neutrophils_Macrophage_Eosinophils_blood_CD14CD16 |
Association with transcript: | 0bp_to_ENST00000402280, NM_001199138, uc002roi.2_5end |
EntrezGene: | NLRC4 |
HGNC: | 16412 |
UniProt: | Q9NPP4B3KTF0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.30e-70 | 72 |
monopoietic cell | 1.30e-67 | 59 |
monocyte | 1.30e-67 | 59 |
monoblast | 1.30e-67 | 59 |
promonocyte | 1.30e-67 | 59 |
macrophage dendritic cell progenitor | 3.64e-67 | 61 |
defensive cell | 3.93e-61 | 48 |
phagocyte | 3.93e-61 | 48 |
myeloid cell | 1.59e-59 | 108 |
common myeloid progenitor | 1.59e-59 | 108 |
granulocyte monocyte progenitor cell | 2.45e-59 | 67 |
myeloid lineage restricted progenitor cell | 2.51e-58 | 66 |
classical monocyte | 3.75e-53 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.75e-53 | 42 |
leukocyte | 1.42e-52 | 136 |
hematopoietic stem cell | 1.39e-47 | 168 |
hematopoietic oligopotent progenitor cell | 7.32e-47 | 161 |
hematopoietic multipotent progenitor cell | 7.32e-47 | 161 |
nongranular leukocyte | 1.46e-45 | 115 |
hematopoietic cell | 1.12e-43 | 177 |
hematopoietic lineage restricted progenitor cell | 1.22e-38 | 120 |
intermediate monocyte | 1.66e-12 | 9 |
CD14-positive, CD16-positive monocyte | 1.66e-12 | 9 |
granulocyte | 1.35e-10 | 8 |
macrophage | 4.02e-09 | 6 |
mesenchymal cell | 9.33e-09 | 354 |
connective tissue cell | 3.66e-08 | 361 |
blood cell | 3.36e-07 | 11 |
conventional dendritic cell | 5.62e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.03e-60 | 98 |
blood island | 3.03e-60 | 98 |
hemolymphoid system | 2.96e-54 | 108 |
bone marrow | 6.45e-50 | 76 |
bone element | 8.56e-45 | 82 |
immune system | 2.50e-42 | 93 |
skeletal element | 4.86e-39 | 90 |
skeletal system | 3.61e-33 | 100 |
lateral plate mesoderm | 7.70e-23 | 203 |
adult organism | 5.73e-15 | 114 |
musculoskeletal system | 7.57e-14 | 167 |
blood | 1.80e-12 | 15 |
haemolymphatic fluid | 1.80e-12 | 15 |
organism substance | 1.80e-12 | 15 |
mesoderm | 1.22e-08 | 315 |
mesoderm-derived structure | 1.22e-08 | 315 |
presumptive mesoderm | 1.22e-08 | 315 |
connective tissue | 8.50e-08 | 371 |