FFCP PHASE1:Hg19::chr20:50159198..50159299,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:50159198..50159299,-
|short_description=p1@NFATC2
|description=CAGE_peak_1_at_NFATC2_5end
|association_with_transcript=0bp_to_ENST00000371564,ENST00000396...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4773 | |EntrezGene=4773 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7776 | |HGNC=7776 | ||
|TSSclassifier=strong | |||
|UniProt=Q13469,B5B2N8,B5B2P3 | |UniProt=Q13469,B5B2N8,B5B2P3 | ||
|association_with_transcript=0bp_to_ENST00000371564,ENST00000396009,NM_012340,NM_173091,uc002xwc.2,uc002xwd.2,uc010zyv.1,uc010zyw.1_5end | |||
|cluster_id=chr20:50159198..50159299,- | |||
|description=CAGE_peak_1_at_NFATC2_5end | |||
|id=chr20:50159198..50159299,- | |||
|ontology_enrichment_celltype=CL:0000037!4.15e-32!172;CL:0000566!4.15e-32!172;CL:0000988!4.08e-31!182;CL:0002032!4.74e-30!165;CL:0000837!4.74e-30!165;CL:0000542!1.22e-24!53;CL:0000051!1.22e-24!53;CL:0000838!3.09e-24!52;CL:0000738!4.93e-24!140;CL:0002031!9.81e-20!124;CL:0002087!8.11e-18!119;CL:0000791!1.09e-12!18;CL:0000789!1.09e-12!18;CL:0002420!1.09e-12!18;CL:0002419!1.09e-12!18;CL:0000790!1.09e-12!18;CL:0000084!1.23e-12!25;CL:0000827!1.23e-12!25;CL:0000945!1.11e-10!24;CL:0000826!1.11e-10!24;CL:0000763!8.89e-10!112;CL:0000049!8.89e-10!112;CL:0000625!2.01e-08!11;CL:0000236!1.55e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.90e-15;53!CL:0000084;1.20e-13;25!CL:0000791;1.40e-13;18!CL:0000789;1.40e-13;18!CL:0002419;1.40e-13;18!CL:0000945;1.74e-11;24!CL:0000625;5.57e-09;11!CL:0000236;1.92e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.89e-31,168;CL:0000988,1.21e-29,177;CL:0002032,1.62e-28,161;CL:0000837,1.62e-28,161;CL:0000542,1.05e-26,53;CL:0000051,1.05e-26,53;CL:0000838,2.87e-26,52;CL:0000738,8.81e-23,136;CL:0002031,3.01e-18,120;CL:0002087,2.78e-16,115;CL:0000084,1.26e-13,25;CL:0000827,1.26e-13,25;CL:0000791,1.43e-13,18;CL:0000789,1.43e-13,18;CL:0002420,1.43e-13,18;CL:0002419,1.43e-13,18;CL:0000790,1.43e-13,18;CL:0000945,1.65e-11,24;CL:0000826,1.65e-11,24;CL:0000625,5.72e-09,11;CL:0000236,5.19e-08,14;CL:0000763,6.18e-08,108;CL:0000049,6.18e-08,108 | |||
|ontology_enrichment_development_v019=CL:0000051;1.90e-15;53!CL:0000790;1.40e-13;18 | |||
|ontology_enrichment_disease=DOID:2531!3.91e-09!51;DOID:0060083!3.91e-09!51;DOID:1240!5.37e-09!39;DOID:8692!3.51e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.67e-07;39!DOID:2531;5.21e-07;51!DOID:0060083;5.21e-07;51!DOID:8692;5.64e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.30e-09,51;DOID:0060083,1.30e-09,51;DOID:1240,4.41e-09,39;DOID:8692,3.86e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.97e-23!115;UBERON:0000178!5.36e-10!15;UBERON:0000179!5.36e-10!15;UBERON:0000463!5.36e-10!15;UBERON:0002193!1.36e-09!112;UBERON:0002390!1.94e-08!102;UBERON:0003061!1.94e-08!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.07e-10;15!UBERON:0000179;1.07e-10;15!UBERON:0000463;1.07e-10;15!UBERON:0002390;7.36e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.77e-24,114;UBERON:0000178,1.15e-10,15;UBERON:0000179,1.15e-10,15;UBERON:0000463,1.15e-10,15;UBERON:0002193,1.96e-08,108;UBERON:0002390,3.56e-07,98;UBERON:0003061,3.56e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,0.697801167972428,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0.410623275218653,0,34.7680996153178,39.326182346524,36.8366456548019,17.3080281813518,41.8374043925962,17.9586703046648,0,0,0,26.6487169996238,13.506077086305,17.9096267994257,12.1878989877013,30.6833004629317,31.4665762537985,4.03047853631864,13.6035339727971,12.363627246441,1.45398238779565,2.26725566213286,0.970336244751265,1.62700325833979,2.05583944010913,0.929119112685311,2.58923153089935,3.33008918487831,0.47296445977717,2.06847408441971,3.87290810150296,2.70852973188684,2.07066573496865,3.0019676506363,0.674170453335254,3.97909060082173,5.1348644332175,0,1.64925650093358,1.99463657621632,0.426224750532694,2.90209238628584,3.40431134814684,2.4912889959823,1.7587406567972,3.12889751052121,0.217188844705117,5.44859552370032,1.84138817993782,1.26584954976354,0.211255286311942,0.212604299965044,0.419317291016752,0,0.150176892841506,0.16072558669708,0.855038231223746,0.19891667719909,0.547992461293902,8.79981222306614,23.4839602842717,17.7901850772711,16.6424786800938,20.4201953388366,18.9668305184979,17.8482115651913,21.9432363543134,68.3055562931338,56.9620073689811,60.3991700437862,43.6165384310785,33.0700052159106,7.63813845847723,69.6352586202969,82.1392494145754,90.4646595597841,18.0561415021932,18.9034914647482,15.6237775892462,15.5861382726329,31.9748011260448,18.5601721709147,19.7165166179423,23.8307400113214,43.9353226659066,40.7085757862419,60.1842730849455,45.597752934665,34.1967641167362,34.9956289062463,31.0347360584067,24.0431704751447,48.2697799891632,45.2200182450267,47.7642149220856,46.302603639569,36.6350226472711,39.0650072313851,31.3649174667963,33.4276764352656,32.3806126220679,39.9778324967507,40.0153555954388,43.5197838368155,89.1101805053317,143.882825331527,96.7427017937097,0,0,0.12786256184353,0,0,0,0,0,0.472674085820339,0.665188192387692,1.14185221401064,7.7932549921139,0,0.370784442784429,6.49094787309367,5.74628133087582,7.57860374957531,7.63169997777094,6.86393892936153,6.3147775226026,5.76410981363445,2.58070378531837,6.94281003215189,1.69592382577203,0,1.37559020970034,2.71693456497854,9.30300333009584,10.3172216179146,21.7568398297036,8.45941565929209,3.04108842287405,13.1793511076012,6.98559852657151,3.24056779152704,8.8406731001239,16.8397029469627,18.4682827992648,12.2653309972707,2.84779697870439,10.0760959161724,1.31780417436063,7.75560528296651,0,0,0,0,0,2.83734705758686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0.975789649036763,0.927708378250397,1.2781333715647,2.17688215532278,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.90524363699719,2.80483547606892,0,0,15.2106041786197,7.86261773342101,12.9973779469909,0,12.1758554157682,0,0,0,0,0,0,0,0,0.34779121492523,0.234817388471643,5.77465791044295,3.24089858803628,5.89787871927255,26.0767451326561,27.4715571870359,0.246217006087397,0,0.891786973732369,0,0,0,0,0,0,31.5304472253404,39.7098437399649,74.4307934791372,86.3278520967599,92.5357037015365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0.239624855491583,0,0,0,0,0,48.0845267732232,82.5558885246075,128.945289765991,136.685333637932,0,0,0,0.167516265334349,0,3.74503511973591,8.97484377612075,5.38740167466846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.3874453551919,40.9856981555372,87.8367800722347,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.71351853407327,0,0.736647911487171,0,0,0,0.902399225814824,1.23224539367064,7.84349769176855,2.92278449306521,1.47772280450026,3.4120015221269,5.10281115829547,7.1252252313706,26.2186329573492,0,0,4.58777291481069,4.15538004464362,2.0148727924996,3.28889814968902,4.96727356947311,0.769350375349168,0,0.325378394664303,10.2010601531245,0,0,0,0,0,0,0,0,0,0,0,0.93749290157711,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3375289733965,0,0,0,0,0,1.26664581178598,0,0,0.349934720244983,0,2.01090682660736,0,10.3558180854457,0,0,0,0,26.894723289305,19.1159301785594,44.4324805995847,33.1142167886327,23.0362872928269,17.5087794022034,21.6012574895246,50.7600112828333,0,0,0,17.4654984618176,3.31819189845823,11.3826949357463,9.2467238182717,28.34027074346,9.95827924688307,43.8164316238438,2.921597462471,12.9166701932191,0.228234679033192,20.368386450493,32.5824820217087,19.8071380027876,0,0.605399121573143,23.4215430729679,9.61814965316141,6.45205605047762,5.14455048152557,3.17013369252626,6.25241905286529,0,46.7732116001307,12.4409612098952,34.9725566397711,28.1974010175699,0.18714054040822,5.27429445378818,0,1.89453753271713,0,8.11731248108146,3.56357616999166,4.60741053148848,2.98244294329889,9.98752856514641,0.222617410045812,0,0,9.16540745954921,65.7555718964131,10.3292426620253,0,16.8626183481665,0,12.9410425652151,5.01259289091706,10.2314474045374,5.52403071566828,31.1328020051022,0,11.6319929531426,4.63840490809256,0,17.9695155148811,0,18.8499889613046,0,3.8138047543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| ||
|short_description=p1@NFATC2 | |||
}} | }} |
Latest revision as of 23:26, 16 September 2015
Short description: | p1@NFATC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NFATC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371564, ENST00000396009, NM_012340, NM_173091, uc002xwc.2, uc002xwd.2, uc010zyv.1, uc010zyw.1_5end |
EntrezGene: | NFATC2 |
HGNC: | 7776 |
UniProt: | Q13469B5B2N8B5B2P3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.89e-31 | 168 |
hematopoietic cell | 1.21e-29 | 177 |
hematopoietic oligopotent progenitor cell | 1.62e-28 | 161 |
hematopoietic multipotent progenitor cell | 1.62e-28 | 161 |
lymphocyte | 1.05e-26 | 53 |
common lymphoid progenitor | 1.05e-26 | 53 |
lymphoid lineage restricted progenitor cell | 2.87e-26 | 52 |
leukocyte | 8.81e-23 | 136 |
hematopoietic lineage restricted progenitor cell | 3.01e-18 | 120 |
nongranular leukocyte | 2.78e-16 | 115 |
T cell | 1.26e-13 | 25 |
pro-T cell | 1.26e-13 | 25 |
mature alpha-beta T cell | 1.43e-13 | 18 |
alpha-beta T cell | 1.43e-13 | 18 |
immature T cell | 1.43e-13 | 18 |
mature T cell | 1.43e-13 | 18 |
immature alpha-beta T cell | 1.43e-13 | 18 |
lymphocyte of B lineage | 1.65e-11 | 24 |
pro-B cell | 1.65e-11 | 24 |
CD8-positive, alpha-beta T cell | 5.72e-09 | 11 |
B cell | 5.19e-08 | 14 |
myeloid cell | 6.18e-08 | 108 |
common myeloid progenitor | 6.18e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.77e-24 | 114 |
blood | 1.15e-10 | 15 |
haemolymphatic fluid | 1.15e-10 | 15 |
organism substance | 1.15e-10 | 15 |
hemolymphoid system | 1.96e-08 | 108 |
hematopoietic system | 3.56e-07 | 98 |
blood island | 3.56e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.30e-09 | 51 |
immune system cancer | 1.30e-09 | 51 |
leukemia | 4.41e-09 | 39 |
myeloid leukemia | 3.86e-07 | 31 |