FFCP PHASE1:Hg19::chr13:33160668..33160714,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23047 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20418 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000450460,ENST00000466078,ENST00000493653,ENST00000498550_5end | |||
|cluster_id=chr13:33160668..33160714,+ | |||
|description=CAGE_peak_1_at_PDS5B_5end | |||
|id=chr13:33160668..33160714,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.34e-11!140;CL:0000037!4.76e-11!172;CL:0000566!4.76e-11!172;CL:0000988!9.86e-10!182;CL:0002032!2.84e-09!165;CL:0000837!2.84e-09!165;CL:0000542!2.53e-08!53;CL:0000051!2.53e-08!53;CL:0000838!3.70e-08!52;CL:0002031!3.38e-07!124 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.54e-12,136;CL:0000037,5.11e-12,168;CL:0000988,6.95e-11,177;CL:0002032,3.71e-10,161;CL:0000837,3.71e-10,161;CL:0000542,2.53e-08,53;CL:0000051,2.53e-08,53;CL:0000838,3.69e-08,52;CL:0002031,4.37e-08,120;CL:0002087,6.55e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.34e-16!115;UBERON:0001017!9.25e-15!82;UBERON:0002780!1.11e-14!41;UBERON:0001890!1.11e-14!41;UBERON:0006240!1.11e-14!41;UBERON:0003080!3.13e-14!42;UBERON:0001049!3.99e-14!57;UBERON:0005068!3.99e-14!57;UBERON:0006241!3.99e-14!57;UBERON:0007135!3.99e-14!57;UBERON:0005743!2.00e-13!86;UBERON:0000073!2.29e-13!94;UBERON:0001016!2.29e-13!94;UBERON:0002616!3.80e-13!59;UBERON:0000955!3.88e-13!69;UBERON:0006238!3.88e-13!69;UBERON:0002020!4.15e-13!34;UBERON:0003528!4.15e-13!34;UBERON:0001869!4.67e-13!32;UBERON:0001893!8.09e-13!34;UBERON:0002791!1.19e-12!33;UBERON:0000956!1.40e-10!25;UBERON:0000203!1.40e-10!25;UBERON:0002619!6.77e-10!22;UBERON:0002346!2.63e-09!90;UBERON:0001950!4.18e-09!20;UBERON:0003075!3.76e-08!86;UBERON:0007284!3.76e-08!86;UBERON:0003056!4.22e-08!61;UBERON:0000153!3.93e-07!129;UBERON:0007811!3.93e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.39e-12;32!UBERON:0002791;5.11e-12;32!UBERON:0003528;1.05e-11;34!UBERON:0002020;1.05e-11;34!UBERON:0001893;2.43e-11;34!UBERON:0002780;5.27e-11;41!UBERON:0001890;5.27e-11;41!UBERON:0000956;1.17e-10;25!UBERON:0000203;1.17e-10;25!UBERON:0002619;5.41e-10;22!UBERON:0001950;3.57e-09;20!UBERON:0000073;4.17e-08;53!UBERON:0002616;4.17e-08;53!UBERON:0001016;2.64e-07;83!UBERON:0001017;2.83e-07;75!UBERON:0000955;7.37e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.45e-15,114;UBERON:0001017,5.03e-15,81;UBERON:0001016,7.63e-15,89;UBERON:0002780,1.11e-14,41;UBERON:0001890,1.11e-14,41;UBERON:0003080,1.11e-14,41;UBERON:0006240,1.11e-14,41;UBERON:0001049,1.80e-14,56;UBERON:0005068,1.80e-14,56;UBERON:0006241,1.80e-14,56;UBERON:0007135,1.80e-14,56;UBERON:0000955,2.06e-13,68;UBERON:0006238,2.06e-13,68;UBERON:0000073,2.72e-13,53;UBERON:0002616,2.72e-13,53;UBERON:0003528,4.15e-13,34;UBERON:0002020,4.15e-13,34;UBERON:0001869,4.66e-13,32;UBERON:0002791,7.28e-13,32;UBERON:0001893,8.08e-13,34;UBERON:0002346,1.08e-10,86;UBERON:0000956,1.40e-10,25;UBERON:0000203,1.40e-10,25;UBERON:0002619,6.76e-10,22;UBERON:0003075,1.89e-09,82;UBERON:0007284,1.89e-09,82;UBERON:0001950,4.17e-09,20;UBERON:0003056,1.19e-08,61 | |||
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| |||
|short_description=p1@PDS5B | |||
}} |
Latest revision as of 04:17, 17 September 2015
Short description: | p1@PDS5B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDS5B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000450460, ENST00000466078, ENST00000493653, ENST00000498550_5end |
EntrezGene: | PDS5B |
HGNC: | 20418 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.54e-12 | 136 |
hematopoietic stem cell | 5.11e-12 | 168 |
hematopoietic cell | 6.95e-11 | 177 |
hematopoietic oligopotent progenitor cell | 3.71e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.71e-10 | 161 |
lymphocyte | 2.53e-08 | 53 |
common lymphoid progenitor | 2.53e-08 | 53 |
lymphoid lineage restricted progenitor cell | 3.69e-08 | 52 |
hematopoietic lineage restricted progenitor cell | 4.37e-08 | 120 |
nongranular leukocyte | 6.55e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.45e-15 | 114 |
central nervous system | 5.03e-15 | 81 |
nervous system | 7.63e-15 | 89 |
regional part of forebrain | 1.11e-14 | 41 |
forebrain | 1.11e-14 | 41 |
anterior neural tube | 1.11e-14 | 41 |
future forebrain | 1.11e-14 | 41 |
neural tube | 1.80e-14 | 56 |
neural rod | 1.80e-14 | 56 |
future spinal cord | 1.80e-14 | 56 |
neural keel | 1.80e-14 | 56 |
brain | 2.06e-13 | 68 |
future brain | 2.06e-13 | 68 |
regional part of nervous system | 2.72e-13 | 53 |
regional part of brain | 2.72e-13 | 53 |
brain grey matter | 4.15e-13 | 34 |
gray matter | 4.15e-13 | 34 |
cerebral hemisphere | 4.66e-13 | 32 |
regional part of telencephalon | 7.28e-13 | 32 |
telencephalon | 8.08e-13 | 34 |
neurectoderm | 1.08e-10 | 86 |
cerebral cortex | 1.40e-10 | 25 |
pallium | 1.40e-10 | 25 |
regional part of cerebral cortex | 6.76e-10 | 22 |
neural plate | 1.89e-09 | 82 |
presumptive neural plate | 1.89e-09 | 82 |
neocortex | 4.17e-09 | 20 |
pre-chordal neural plate | 1.19e-08 | 61 |