FFCP PHASE1:Hg19::chr19:3062910..3062955,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:3062910..3062955,- to FFCP PHASE1:Hg19::chr19:3062910..3062955,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=166 | |EntrezGene=166 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=307 | |HGNC=307 | ||
|TSSclassifier=strong | |||
|UniProt=Q14CJ1,Q8WY48 | |UniProt=Q14CJ1,Q8WY48 | ||
|association_with_transcript=8bp_to_ENST00000221561,NM_198969,uc002lxb.1,uc002lxc.2_5end | |||
|cluster_id=chr19:3062910..3062955,- | |||
|description=CAGE_peak_4_at_AES_5end | |||
|id=chr19:3062910..3062955,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.16e-13!115;UBERON:0001869!1.42e-11!32;UBERON:0002020!3.69e-11!34;UBERON:0003528!3.69e-11!34;UBERON:0001893!4.41e-11!34;UBERON:0001049!7.87e-11!57;UBERON:0005068!7.87e-11!57;UBERON:0006241!7.87e-11!57;UBERON:0007135!7.87e-11!57;UBERON:0002791!1.36e-10!33;UBERON:0002619!1.60e-10!22;UBERON:0000064!6.83e-10!219;UBERON:0001950!1.21e-09!20;UBERON:0002780!2.17e-09!41;UBERON:0001890!2.17e-09!41;UBERON:0006240!2.17e-09!41;UBERON:0003075!5.66e-09!86;UBERON:0007284!5.66e-09!86;UBERON:0002616!1.26e-08!59;UBERON:0003080!1.47e-08!42;UBERON:0000956!3.62e-08!25;UBERON:0000203!3.62e-08!25;UBERON:0002346!6.56e-08!90;UBERON:0001017!7.04e-08!82;UBERON:0005743!1.30e-07!86;UBERON:0000955!1.61e-07!69;UBERON:0006238!1.61e-07!69;UBERON:0001737!2.78e-07!9;UBERON:0001557!4.85e-07!19;UBERON:0003056!6.03e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.44e-10;32!UBERON:0002619;1.45e-10;22!UBERON:0002791;4.66e-10;32!UBERON:0003528;9.77e-10;34!UBERON:0002020;9.77e-10;34!UBERON:0001950;1.13e-09;20!UBERON:0001893;1.45e-09;34!UBERON:0000956;3.42e-08;25!UBERON:0000203;3.42e-08;25!UBERON:0001737;2.48e-07;9!UBERON:0001557;2.48e-07;9!UBERON:0002780;4.16e-07;41!UBERON:0001890;4.16e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.13e-12,114;UBERON:0001049,1.20e-11,56;UBERON:0005068,1.20e-11,56;UBERON:0006241,1.20e-11,56;UBERON:0007135,1.20e-11,56;UBERON:0001869,1.35e-11,32;UBERON:0000073,3.09e-11,53;UBERON:0002616,3.09e-11,53;UBERON:0003528,3.52e-11,34;UBERON:0002020,3.52e-11,34;UBERON:0001893,4.21e-11,34;UBERON:0002791,5.66e-11,32;UBERON:0002619,1.53e-10,22;UBERON:0001950,1.16e-09,20;UBERON:0003075,1.96e-09,82;UBERON:0007284,1.96e-09,82;UBERON:0002780,2.19e-09,41;UBERON:0001890,2.19e-09,41;UBERON:0003080,2.19e-09,41;UBERON:0006240,2.19e-09,41;UBERON:0001017,2.11e-08,81;UBERON:0010371,2.59e-08,104;UBERON:0002346,2.84e-08,86;UBERON:0000956,3.50e-08,25;UBERON:0000203,3.50e-08,25;UBERON:0000955,4.48e-08,68;UBERON:0006238,4.48e-08,68;UBERON:0003056,2.60e-07,61;UBERON:0001737,2.70e-07,9;UBERON:0010314,2.70e-07,132;UBERON:0001557,4.72e-07,19;UBERON:0001016,6.68e-07,89 | |||
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| ||
|short_description=p4@AES | |||
}} | }} |
Latest revision as of 04:25, 17 September 2015
Short description: | p4@AES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_AES_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000221561, NM_198969, uc002lxb.1, uc002lxc.2_5end |
EntrezGene: | AES |
HGNC: | 307 |
UniProt: | Q14CJ1Q8WY48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.13e-12 | 114 |
neural tube | 1.20e-11 | 56 |
neural rod | 1.20e-11 | 56 |
future spinal cord | 1.20e-11 | 56 |
neural keel | 1.20e-11 | 56 |
cerebral hemisphere | 1.35e-11 | 32 |
regional part of nervous system | 3.09e-11 | 53 |
regional part of brain | 3.09e-11 | 53 |
brain grey matter | 3.52e-11 | 34 |
gray matter | 3.52e-11 | 34 |
telencephalon | 4.21e-11 | 34 |
regional part of telencephalon | 5.66e-11 | 32 |
regional part of cerebral cortex | 1.53e-10 | 22 |
neocortex | 1.16e-09 | 20 |
neural plate | 1.96e-09 | 82 |
presumptive neural plate | 1.96e-09 | 82 |
regional part of forebrain | 2.19e-09 | 41 |
forebrain | 2.19e-09 | 41 |
anterior neural tube | 2.19e-09 | 41 |
future forebrain | 2.19e-09 | 41 |
central nervous system | 2.11e-08 | 81 |
ecto-epithelium | 2.59e-08 | 104 |
neurectoderm | 2.84e-08 | 86 |
cerebral cortex | 3.50e-08 | 25 |
pallium | 3.50e-08 | 25 |
brain | 4.48e-08 | 68 |
future brain | 4.48e-08 | 68 |
pre-chordal neural plate | 2.60e-07 | 61 |
larynx | 2.70e-07 | 9 |
structure with developmental contribution from neural crest | 2.70e-07 | 132 |
upper respiratory tract | 4.72e-07 | 19 |
nervous system | 6.68e-07 | 89 |