FFCP PHASE1:Hg19::chr8:17780466..17780477,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5108 | |EntrezGene=5108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8727 | |HGNC=8727 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000518930_5end | |association_with_transcript=0bp_to_ENST00000518930_5end | ||
|cluster_id=chr8:17780466..17780477,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_5_at_PCM1_5end | |description=CAGE_peak_5_at_PCM1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.08e-15!115;UBERON:0001017!3.55e-12!82;UBERON:0000073!5.00e-12!94;UBERON:0001016!5.00e-12!94;UBERON:0001049!1.07e-11!57;UBERON:0005068!1.07e-11!57;UBERON:0006241!1.07e-11!57;UBERON:0007135!1.07e-11!57;UBERON:0005743!2.41e-11!86;UBERON:0000955!4.17e-11!69;UBERON:0006238!4.17e-11!69;UBERON:0003080!1.47e-10!42;UBERON:0002780!2.16e-10!41;UBERON:0001890!2.16e-10!41;UBERON:0006240!2.16e-10!41;UBERON:0001893!2.19e-10!34;UBERON:0001869!2.46e-10!32;UBERON:0002791!5.81e-10!33;UBERON:0002020!6.01e-10!34;UBERON:0003528!6.01e-10!34;UBERON:0002346!8.08e-10!90;UBERON:0003075!8.64e-10!86;UBERON:0007284!8.64e-10!86;UBERON:0002616!5.64e-09!59;UBERON:0002619!7.87e-08!22;UBERON:0003056!9.48e-08!61;UBERON:0001950!1.13e-07!20;UBERON:0000956!1.40e-07!25;UBERON:0000203!1.40e-07!25 | |ontology_enrichment_uberon=UBERON:0007023!1.08e-15!115;UBERON:0001017!3.55e-12!82;UBERON:0000073!5.00e-12!94;UBERON:0001016!5.00e-12!94;UBERON:0001049!1.07e-11!57;UBERON:0005068!1.07e-11!57;UBERON:0006241!1.07e-11!57;UBERON:0007135!1.07e-11!57;UBERON:0005743!2.41e-11!86;UBERON:0000955!4.17e-11!69;UBERON:0006238!4.17e-11!69;UBERON:0003080!1.47e-10!42;UBERON:0002780!2.16e-10!41;UBERON:0001890!2.16e-10!41;UBERON:0006240!2.16e-10!41;UBERON:0001893!2.19e-10!34;UBERON:0001869!2.46e-10!32;UBERON:0002791!5.81e-10!33;UBERON:0002020!6.01e-10!34;UBERON:0003528!6.01e-10!34;UBERON:0002346!8.08e-10!90;UBERON:0003075!8.64e-10!86;UBERON:0007284!8.64e-10!86;UBERON:0002616!5.64e-09!59;UBERON:0002619!7.87e-08!22;UBERON:0003056!9.48e-08!61;UBERON:0001950!1.13e-07!20;UBERON:0000956!1.40e-07!25;UBERON:0000203!1.40e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.23e-10;32!UBERON:0001893;1.27e-09;34!UBERON:0002791;5.04e-09;32!UBERON:0003528;3.11e-08;34!UBERON:0002020;3.11e-08;34!UBERON:0001950;9.58e-08;20!UBERON:0001872;1.73e-07;5!UBERON:0001017;2.15e-07;75!UBERON:0002780;3.18e-07;41!UBERON:0001890;3.18e-07;41!UBERON:0001016;3.54e-07;83!UBERON:0002619;8.08e-07;22!UBERON:0000956;8.73e-07;25!UBERON:0000203;8.73e-07;25 | |ontology_enrichment_uberon_v019=UBERON:0001869;4.23e-10;32!UBERON:0001893;1.27e-09;34!UBERON:0002791;5.04e-09;32!UBERON:0003528;3.11e-08;34!UBERON:0002020;3.11e-08;34!UBERON:0001950;9.58e-08;20!UBERON:0001872;1.73e-07;5!UBERON:0001017;2.15e-07;75!UBERON:0002780;3.18e-07;41!UBERON:0001890;3.18e-07;41!UBERON:0001016;3.54e-07;83!UBERON:0002619;8.08e-07;22!UBERON:0000956;8.73e-07;25!UBERON:0000203;8.73e-07;25 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.95e-15,81;UBERON:0001016,2.41e-14,89;UBERON:0007023,2.37e-13,114;UBERON:0001869,2.91e-12,32;UBERON:0001049,3.20e-12,56;UBERON:0005068,3.20e-12,56;UBERON:0006241,3.20e-12,56;UBERON:0007135,3.20e-12,56;UBERON:0002780,7.57e-12,41;UBERON:0001890,7.57e-12,41;UBERON:0003080,7.57e-12,41;UBERON:0006240,7.57e-12,41;UBERON:0000955,1.14e-11,68;UBERON:0006238,1.14e-11,68;UBERON:0001893,3.05e-11,34;UBERON:0002791,6.45e-11,32;UBERON:0003056,3.37e-10,61;UBERON:0000073,4.90e-10,53;UBERON:0002616,4.90e-10,53;UBERON:0003528,5.36e-10,34;UBERON:0002020,5.36e-10,34;UBERON:0003075,1.22e-09,82;UBERON:0007284,1.22e-09,82;UBERON:0002346,8.29e-09,86;UBERON:0001950,1.70e-08,20;UBERON:0001872,5.38e-08,5;UBERON:0000956,1.58e-07,25;UBERON:0000203,1.58e-07,25;UBERON:0002619,1.74e-07,22;UBERON:0010314,2.86e-07,132 | |||
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| ||
|short_description=p5@PCM1 | |short_description=p5@PCM1 | ||
}} | }} |
Latest revision as of 05:40, 17 September 2015
Short description: | p5@PCM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PCM1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000518930_5end |
EntrezGene: | PCM1 |
HGNC: | 8727 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.95e-15 | 81 |
nervous system | 2.41e-14 | 89 |
adult organism | 2.37e-13 | 114 |
cerebral hemisphere | 2.91e-12 | 32 |
neural tube | 3.20e-12 | 56 |
neural rod | 3.20e-12 | 56 |
future spinal cord | 3.20e-12 | 56 |
neural keel | 3.20e-12 | 56 |
regional part of forebrain | 7.57e-12 | 41 |
forebrain | 7.57e-12 | 41 |
anterior neural tube | 7.57e-12 | 41 |
future forebrain | 7.57e-12 | 41 |
brain | 1.14e-11 | 68 |
future brain | 1.14e-11 | 68 |
telencephalon | 3.05e-11 | 34 |
regional part of telencephalon | 6.45e-11 | 32 |
pre-chordal neural plate | 3.37e-10 | 61 |
regional part of nervous system | 4.90e-10 | 53 |
regional part of brain | 4.90e-10 | 53 |
brain grey matter | 5.36e-10 | 34 |
gray matter | 5.36e-10 | 34 |
neural plate | 1.22e-09 | 82 |
presumptive neural plate | 1.22e-09 | 82 |
neurectoderm | 8.29e-09 | 86 |
neocortex | 1.70e-08 | 20 |
parietal lobe | 5.38e-08 | 5 |
cerebral cortex | 1.58e-07 | 25 |
pallium | 1.58e-07 | 25 |
regional part of cerebral cortex | 1.74e-07 | 22 |
structure with developmental contribution from neural crest | 2.86e-07 | 132 |