FFCP PHASE1:Hg19::chr5:176943586..176943600,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:176943586..176943600,- to FFCP PHASE1:Hg19::chr5:176943586..176943600,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51428 | |EntrezGene=51428 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18674 | |HGNC=18674 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-261bp_to_ENST00000504781_5end | |||
|cluster_id=chr5:176943586..176943600,- | |||
|coexpression_cluster_id=C2471 | |||
|description=CAGE_peak_5_at_DDX41_5end | |||
|id=chr5:176943586..176943600,- | |||
|ontology_enrichment_celltype=CL:0000055!2.78e-12!180;CL:0000359!3.50e-11!32;CL:0000680!8.58e-09!57;CL:0000056!8.58e-09!57;CL:0000355!8.58e-09!57;CL:0000192!1.32e-08!42;CL:0000514!1.32e-08!42;CL:0000187!1.15e-07!54;CL:0000183!1.92e-07!59;CL:0000393!2.80e-07!60;CL:0000211!2.80e-07!60;CL:0000548!3.99e-07!679;CL:0000004!3.99e-07!679;CL:0000255!3.99e-07!679;CL:0000012!8.03e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.63e-28;32!CL:0000192;3.53e-17;43!CL:0002595;1.95e-12;5!CL:0000187;6.26e-11;55!CL:0002594;8.97e-10;4!CL:0002539;3.75e-09;10!CL:0000393;6.62e-09;61!CL:0000211;6.62e-09;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.06e-30,32;CL:0000192,5.69e-21,43;CL:0000514,5.69e-21,43;CL:0000187,1.18e-18,55;CL:0000393,8.35e-18,61;CL:0000211,8.35e-18,61;CL:0000680,2.33e-17,58;CL:0000056,2.33e-17,58;CL:0000355,2.33e-17,58;CL:0002595,2.06e-12,5;CL:0000222,5.58e-11,121;CL:0002594,1.25e-09,4;CL:0002539,2.75e-09,10;CL:0000034,4.24e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000514;3.53e-17;43!CL:0000355;1.99e-09;58 | |||
|ontology_enrichment_disease=DOID:2394!1.26e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.68e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.46e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001637!4.02e-10!42;UBERON:0003509!4.02e-10!42;UBERON:0004572!4.02e-10!42;UBERON:0004573!2.67e-09!33;UBERON:0004571!2.67e-09!33;UBERON:0001134!1.69e-07!61;UBERON:0002036!1.69e-07!61;UBERON:0003082!1.69e-07!61;UBERON:0002385!6.25e-07!63;UBERON:0001015!6.25e-07!63;UBERON:0000383!6.25e-07!63;UBERON:0000055!6.33e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.92e-18;33!UBERON:0004571;4.92e-18;33!UBERON:0001637;5.27e-15;42!UBERON:0003509;5.27e-15;42!UBERON:0004572;5.27e-15;42!UBERON:0003513;9.51e-13;7!UBERON:0003834;1.95e-12;5!UBERON:0001533;1.95e-12;5!UBERON:0001310;8.97e-10;4!UBERON:0007500;2.83e-09;56!UBERON:0001981;2.83e-09;56!UBERON:0004537;2.83e-09;56!UBERON:0004237;3.75e-09;10!UBERON:0004695;3.75e-09;10!UBERON:0002111;3.75e-09;10!UBERON:0004178;3.75e-09;10!UBERON:0003914;6.56e-07;74!UBERON:0002049;8.36e-07;75!UBERON:0007798;8.36e-07;75!UBERON:0000055;9.66e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,5.88e-24,42;UBERON:0003509,5.88e-24,42;UBERON:0004572,5.88e-24,42;UBERON:0004573,2.22e-21,33;UBERON:0004571,2.22e-21,33;UBERON:0007500,4.51e-17,59;UBERON:0001981,4.51e-17,59;UBERON:0004537,4.51e-17,59;UBERON:0006965,4.51e-17,59;UBERON:0004872,5.61e-17,83;UBERON:0001134,7.82e-16,62;UBERON:0002036,7.82e-16,62;UBERON:0003082,7.82e-16,62;UBERON:0002385,3.83e-15,64;UBERON:0001015,3.83e-15,64;UBERON:0000383,3.83e-15,64;UBERON:0000055,5.50e-14,68;UBERON:0002329,4.80e-13,71;UBERON:0003059,4.80e-13,71;UBERON:0007282,4.80e-13,71;UBERON:0004290,4.80e-13,71;UBERON:0009618,4.80e-13,71;UBERON:0003077,8.84e-13,72;UBERON:0007285,8.84e-13,72;UBERON:0003914,8.85e-13,117;UBERON:0003513,9.99e-13,7;UBERON:0002049,1.06e-12,78;UBERON:0007798,1.06e-12,78;UBERON:0007524,1.60e-12,73;UBERON:0007503,1.69e-12,78;UBERON:0003834,2.06e-12,5;UBERON:0001533,2.06e-12,5;UBERON:0000486,2.29e-11,83;UBERON:0004535,4.08e-11,109;UBERON:0001009,1.26e-10,112;UBERON:0005256,4.78e-10,122;UBERON:0001310,1.25e-09,4;UBERON:0004237,2.75e-09,10;UBERON:0004695,2.75e-09,10;UBERON:0002111,2.75e-09,10;UBERON:0004178,2.75e-09,10;UBERON:0000490,4.31e-07,148 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.563817616383885,0,0,0.872338524100369,0,1.89515962028049,0,2.21160542851358,1.39560233594486,0,0,0,0,0.672325146451775,0,0,0,0,0.204000691244253,0,0,0,0,0.840547463227464,0.410502947249729,0.629686250509434,0,0,0,0,0,0,0,2.55904618477359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,6.00954040664593,0,1.00267582127178,0.144846518960824,1.5905718941022,5.35298357332899,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0.39752481473341,0.860234595106124,0,0,0,0,0,0.516833518338658,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,2.98183171017191,0.25326102332916,2.38336525463794,0,0,3.36406560085384,6.4049397437823,1.2333377420858,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0,0,0,0,0,0,0,0.30648779579902,0,0.680593098960126,0.89694817844431,0,3.17897851739343,0.300091096084402,0.412210116953756,0,0,0.843881661206331,1.46155507741798,1.00973509697646,0.828449087780694,0.161646056818812,0.710019185033229,0.503760491138201,1.69560592310488,0,0.272746120590835,0,0,0.265059536642971,9.17932148669195,4.45742536566093,6.30802127189071,0,0,0,0,0,0,0.118306800039844,0,0,0.330881918197182,0.653638332277218,0.237270619111097,0.404493924480493,0.392442930250692,0,0,7.01208869017229,0.4115740113314,0,0,0,0,0.441463099414651,0,3.60292401626904,0.658501712451753,0,0,0,0,0,0,0.34779121492523,0.234817388471643,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,0,0.283550194484773,0.358234090811393,0,0.383382679165211,0,0,0,0,0,0,0.381988425558278,0,0,0.102827492703324,0.300343057843917,0,0.112131084345361,0,0.4400297149257,0,0,0,0,0,0,0,0,2.14466990487221,0,0,0,3.19852753868291,0,1.50719688529793,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,0,1.42636905040718,0.868687840005475,0.205476322550383,0.895304816199478,0.224170287987055,0,0,0,0.254094624222463,0,1.54657762555539,0,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0.831883446123229,0.535286966391485,0,0.117141414992713,3.31040709700491,0,0,0.664225598535437,1.10621501125022,0.0868836144680828,0.391602314925481,0.686286847621712,0,0,0,0,0,0,0.744323423456331,0.306923946576125,0.280660094433074,0.896974044789907,1.02341449813341,0.160853921143607,1.48418066444991,0,0.355123450626254,0,0,0,0,5.61418116849198,0.184161977871793,0.459257792658427,0,0.262248829918848,0,0.539107359730903,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,1.14853107599234,0,6.42735719376638,0.193341436584244,0,0,0.137836572484531,0,0,0.0852266274161009,0,0.826424576804891,0.768760269460425,0.893288987462089,0.10115778085555,4.18360994367557,8.18512101759664,6.970372701606,2.7723022215848,3.72614221221915,1.73986598415015,3.52116016297448,3.72124705529177,0,0,0,0.255897791311334,0.42793898803392,2.22742273548156,11.7742296029885,0,0,0,2.22400729730648,12.6808256938407,0,0,1.21856744815642,1.05650146756755,0.272999822815972,0.565621727814851,0,6.61638412255349,1.99031692572366,3.5076070820301,0,0,2.23201414658974,1.239293992399,1.12678241012897,0,0.0982490410131212,1.426684205925,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,0,1.29151611801369,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.577076851905779,0.284567373393656,0.159426272728822,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51592382018778,0,0,0,0,0.606802608747567,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0.251932747854276,0,1.10776324914963,15.2409397954286,0,0,0,0.394573622547734,0,0,0,0,0,0,0.0874599999961957,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0.0769502585037971,0,0.23056390438806,0,0.434589487688032,0,0,0,0,0.31396051279005,0.166211681900156,0.225595660617181,0.392125068635479,0.167821586975843,0.189753732724185,0.317873157960757,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21390189767046,0,0,0,0.063186579628488,0.450970258243478,0,0,0.330991955875499,0,0,0.284609546029793,0,0,0.0979923974143777,0.174118413160805,0,0,0,0,0.0821154570532092,0,0.441280633457501,0.90392296312213,0.137041924646751,0.397429223405979,0,0,0.160317640503067,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0.271808412147228,0,0,0,0,0,0,2.14882720709979,1.31443677139657,0,0,0,0,0,0,0,0.720599767084807,0,0.393915911536118,0.164831716762333,0.674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0.105600336519406,0.179287339332845,0,0,0,0.5085370753095,1.62899880526114,0,0.326587360109409,0,0.328370082997356,0.851940108927109,0.566560457600628,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0.138348634936231,0,0.454947352624943,0.285465333544967,0,0,0,0.895528817321244,0.701139929541673,2.77402930751307,0,0,1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| 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| ||
|short_description=p5@DDX41 | |||
}} | }} |
Latest revision as of 07:12, 17 September 2015
Short description: | p5@DDX41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_DDX41_5end |
Coexpression cluster: | C2471_basal_Smooth_mucinous_Chondrocyte_H9_Cardiac_Sertoli |
Association with transcript: | -261bp_to_ENST00000504781_5end |
EntrezGene: | DDX41 |
HGNC: | 18674 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.06e-30 | 32 |
smooth muscle cell | 5.69e-21 | 43 |
smooth muscle myoblast | 5.69e-21 | 43 |
muscle cell | 1.18e-18 | 55 |
electrically responsive cell | 8.35e-18 | 61 |
electrically active cell | 8.35e-18 | 61 |
muscle precursor cell | 2.33e-17 | 58 |
myoblast | 2.33e-17 | 58 |
multi-potent skeletal muscle stem cell | 2.33e-17 | 58 |
smooth muscle cell of the subclavian artery | 2.06e-12 | 5 |
mesodermal cell | 5.58e-11 | 121 |
smooth muscle cell of the umbilical artery | 1.25e-09 | 4 |
aortic smooth muscle cell | 2.75e-09 | 10 |
stem cell | 4.24e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.46e-08 | 14 |