FFCP PHASE1:Hg19::chr1:153919069..153919115,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9909 | |EntrezGene=9909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29044 | |HGNC=29044 | ||
|TSSclassifier=strong | |||
|UniProt=O75064 | |UniProt=O75064 | ||
|association_with_transcript=38bp_to_NM_014856,uc001fdd.1_5end | |association_with_transcript=38bp_to_NM_014856,uc001fdd.1_5end | ||
|cluster_id=chr1:153919069..153919115,- | |||
|description=CAGE_peak_3_at_DENND4B_5end | |description=CAGE_peak_3_at_DENND4B_5end | ||
|id=chr1:153919069..153919115,- | |id=chr1:153919069..153919115,- | ||
|ontology_enrichment_celltype=CL:0002087!1.04e-08!119;CL:0002031!5.52e-08!124;CL:0000738!1.20e-07!140;CL:0000988!5.56e-07!182;CL:0000037!6.96e-07!172;CL:0000566!6.96e-07!172 | |ontology_enrichment_celltype=CL:0002087!1.04e-08!119;CL:0002031!5.52e-08!124;CL:0000738!1.20e-07!140;CL:0000988!5.56e-07!182;CL:0000037!6.96e-07!172;CL:0000566!6.96e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.10e-08;33!CL:0002057;5.10e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,1.68e-08,115;CL:0002031,9.73e-08,120;CL:0000738,1.66e-07,136;CL:0000988,7.33e-07,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.72e-17!115;UBERON:0001049!1.54e-15!57;UBERON:0005068!1.54e-15!57;UBERON:0006241!1.54e-15!57;UBERON:0007135!1.54e-15!57;UBERON:0001017!2.06e-13!82;UBERON:0003080!6.44e-13!42;UBERON:0005743!1.24e-12!86;UBERON:0002780!1.57e-12!41;UBERON:0001890!1.57e-12!41;UBERON:0006240!1.57e-12!41;UBERON:0000955!1.87e-12!69;UBERON:0006238!1.87e-12!69;UBERON:0002616!2.45e-12!59;UBERON:0001893!2.49e-12!34;UBERON:0002020!3.50e-12!34;UBERON:0003528!3.50e-12!34;UBERON:0000073!7.73e-12!94;UBERON:0001016!7.73e-12!94;UBERON:0002791!8.58e-12!33;UBERON:0001869!3.51e-11!32;UBERON:0002619!2.04e-09!22;UBERON:0003075!1.20e-08!86;UBERON:0007284!1.20e-08!86;UBERON:0003056!1.63e-08!61;UBERON:0001950!1.92e-08!20;UBERON:0000956!2.82e-08!25;UBERON:0000203!2.82e-08!25;UBERON:0002346!1.17e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.56e-10;34!UBERON:0002791;3.20e-10;32!UBERON:0003528;4.26e-10;34!UBERON:0002020;4.26e-10;34!UBERON:0001869;7.03e-10;32!UBERON:0002780;1.52e-09;41!UBERON:0001890;1.52e-09;41!UBERON:0002619;3.23e-09;22!UBERON:0000073;2.32e-08;53!UBERON:0002616;2.32e-08;53!UBERON:0001950;3.07e-08;20!UBERON:0000956;3.83e-08;25!UBERON:0000203;3.83e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.05e-16,114;UBERON:0001049,3.81e-15,56;UBERON:0005068,3.81e-15,56;UBERON:0006241,3.81e-15,56;UBERON:0007135,3.81e-15,56;UBERON:0000073,3.26e-14,53;UBERON:0002616,3.26e-14,53;UBERON:0001017,4.61e-13,81;UBERON:0002780,1.31e-12,41;UBERON:0001890,1.31e-12,41;UBERON:0003080,1.31e-12,41;UBERON:0006240,1.31e-12,41;UBERON:0001893,2.57e-12,34;UBERON:0001016,3.05e-12,89;UBERON:0003528,3.61e-12,34;UBERON:0002020,3.61e-12,34;UBERON:0000955,4.26e-12,68;UBERON:0006238,4.26e-12,68;UBERON:0002791,3.33e-11,32;UBERON:0001869,3.64e-11,32;UBERON:0002619,2.15e-09,22;UBERON:0003075,4.01e-09,82;UBERON:0007284,4.01e-09,82;UBERON:0003056,1.88e-08,61;UBERON:0001950,2.03e-08,20;UBERON:0000956,2.95e-08,25;UBERON:0000203,2.95e-08,25;UBERON:0002346,4.25e-08,86;UBERON:0010371,3.72e-07,104 | |||
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| ||
|short_description=p3@DENND4B | |short_description=p3@DENND4B | ||
}} | }} |
Latest revision as of 07:43, 17 September 2015
Short description: | p3@DENND4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DENND4B_5end |
Coexpression cluster: | NA |
Association with transcript: | 38bp_to_NM_014856, uc001fdd.1_5end |
EntrezGene: | DENND4B |
HGNC: | 29044 |
UniProt: | O75064 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 1.68e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 9.73e-08 | 120 |
leukocyte | 1.66e-07 | 136 |
hematopoietic cell | 7.33e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.05e-16 | 114 |
neural tube | 3.81e-15 | 56 |
neural rod | 3.81e-15 | 56 |
future spinal cord | 3.81e-15 | 56 |
neural keel | 3.81e-15 | 56 |
regional part of nervous system | 3.26e-14 | 53 |
regional part of brain | 3.26e-14 | 53 |
central nervous system | 4.61e-13 | 81 |
regional part of forebrain | 1.31e-12 | 41 |
forebrain | 1.31e-12 | 41 |
anterior neural tube | 1.31e-12 | 41 |
future forebrain | 1.31e-12 | 41 |
telencephalon | 2.57e-12 | 34 |
nervous system | 3.05e-12 | 89 |
brain grey matter | 3.61e-12 | 34 |
gray matter | 3.61e-12 | 34 |
brain | 4.26e-12 | 68 |
future brain | 4.26e-12 | 68 |
regional part of telencephalon | 3.33e-11 | 32 |
cerebral hemisphere | 3.64e-11 | 32 |
regional part of cerebral cortex | 2.15e-09 | 22 |
neural plate | 4.01e-09 | 82 |
presumptive neural plate | 4.01e-09 | 82 |
pre-chordal neural plate | 1.88e-08 | 61 |
neocortex | 2.03e-08 | 20 |
cerebral cortex | 2.95e-08 | 25 |
pallium | 2.95e-08 | 25 |
neurectoderm | 4.25e-08 | 86 |
ecto-epithelium | 3.72e-07 | 104 |