FFCP PHASE1:Hg19::chr20:6034618..6034669,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=164312 | |EntrezGene=164312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16208 | |HGNC=16208 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WUT4,Q6ZMD1 | |UniProt=Q8WUT4,Q6ZMD1 | ||
|association_with_transcript=24bp_to_NM_152611,uc002wmo.2,uc002wmp.2_5end | |association_with_transcript=24bp_to_NM_152611,uc002wmo.2,uc002wmp.2_5end | ||
|cluster_id=chr20:6034618..6034669,- | |||
|coexpression_cluster_id=C548 | |||
|description=CAGE_peak_1_at_LRRN4_5end | |description=CAGE_peak_1_at_LRRN4_5end | ||
|id=chr20:6034618..6034669,- | |id=chr20:6034618..6034669,- | ||
|ontology_enrichment_celltype=CL:1000497!1.06e-20!18;CL:0002518!1.06e-20!18;CL:1000449!4.50e-18!16;CL:1000507!9.38e-16!12;CL:1000494!9.38e-16!12;CL:0002681!1.20e-13!13;CL:0002584!1.20e-13!13;CL:0000077!3.83e-12!19;CL:0000066!7.26e-12!254;CL:1000612!6.91e-08!7;CL:1000746!6.91e-08!7;CL:0002322!7.26e-07!5 | |ontology_enrichment_celltype=CL:1000497!1.06e-20!18;CL:0002518!1.06e-20!18;CL:1000449!4.50e-18!16;CL:1000507!9.38e-16!12;CL:1000494!9.38e-16!12;CL:0002681!1.20e-13!13;CL:0002584!1.20e-13!13;CL:0000077!3.83e-12!19;CL:0000066!7.26e-12!254;CL:1000612!6.91e-08!7;CL:1000746!6.91e-08!7;CL:0002322!7.26e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:1000497;3.33e-32;17!CL:0002518;3.33e-32;17!CL:1000449;6.62e-28;15!CL:1000507;1.92e-26;10!CL:1000494;1.92e-26;10!CL:0002681;1.42e-20;12!CL:0002584;1.42e-20;12!CL:0000077;1.53e-17;19!CL:1000746;3.49e-09;7!CL:1000612;3.49e-09;7!CL:0000239;4.07e-09;3!CL:1000615;4.07e-09;3!CL:0002306;4.07e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.95e-32,17;CL:0002518,2.95e-32,17;CL:1000449,6.64e-28,15;CL:1000507,1.90e-26,10;CL:1000494,1.90e-26,10;CL:0002681,1.45e-20,12;CL:0002584,1.45e-20,12;CL:0000077,1.34e-17,19;CL:0000066,9.48e-11,253;CL:1000746,3.52e-09,7;CL:1000612,3.52e-09,7;CL:0000239,4.13e-09,3;CL:1000615,4.13e-09,3;CL:0002306,4.13e-09,3;CL:0000213,1.67e-07,58;CL:0000215,1.67e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!9.93e-13!29;DOID:120!1.15e-12!27;DOID:2394!6.64e-08!14 | |ontology_enrichment_disease=DOID:193!9.93e-13!29;DOID:120!1.15e-12!27;DOID:2394!6.64e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:120;3.14e-15;27!DOID:193;6.21e-14;29!DOID:2394;1.31e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,3.51e-15,27;DOID:193,6.87e-14,29;DOID:2394,1.42e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0006555!3.26e-19!17;UBERON:0005103!3.26e-19!17;UBERON:0000083!3.26e-19!17;UBERON:0009201!3.26e-19!17;UBERON:0004819!3.26e-19!17;UBERON:0006553!3.26e-19!17;UBERON:0003074!3.26e-19!17;UBERON:0003060!3.26e-19!17;UBERON:0004211!4.50e-18!16;UBERON:0001285!4.50e-18!16;UBERON:0007684!4.50e-18!16;UBERON:0003220!4.50e-18!16;UBERON:0004208!4.50e-18!16;UBERON:0000080!7.23e-18!18;UBERON:0002120!7.23e-18!18;UBERON:0004875!7.23e-18!18;UBERON:0005721!7.23e-18!18;UBERON:0005754!7.23e-18!18;UBERON:0007297!7.23e-18!18;UBERON:0002113!1.33e-17!27;UBERON:0003918!1.33e-17!27;UBERON:0005095!1.33e-17!27;UBERON:0007687!1.33e-17!27;UBERON:0003887!2.01e-16!21;UBERON:0009773!9.38e-16!12;UBERON:0001231!9.38e-16!12;UBERON:0004810!9.38e-16!12;UBERON:0000058!1.04e-15!26;UBERON:0004876!1.38e-15!20;UBERON:0000489!3.14e-15!32;UBERON:0005172!5.92e-15!55;UBERON:0005173!5.92e-15!55;UBERON:0001225!1.20e-13!13;UBERON:0008987!1.20e-13!13;UBERON:0001851!9.73e-13!16;UBERON:0002417!1.28e-12!61;UBERON:0000916!1.28e-12!61;UBERON:0003886!2.27e-12!63;UBERON:0006554!1.12e-11!44;UBERON:0000353!1.17e-11!17;UBERON:0001008!2.86e-11!45;UBERON:0000466!3.29e-11!126;UBERON:0003103!4.17e-11!69;UBERON:0003064!9.46e-11!37;UBERON:0002553!2.76e-10!70;UBERON:0005177!7.67e-10!107;UBERON:0000464!2.62e-09!104;UBERON:0003124!8.55e-09!7;UBERON:0003133!1.05e-08!48;UBERON:0003134!1.77e-08!37;UBERON:0000474!1.77e-08!37;UBERON:0009569!3.25e-08!113;UBERON:0000074!6.91e-08!7;UBERON:0001229!6.91e-08!7;UBERON:0001230!6.91e-08!7;UBERON:0005749!6.91e-08!7;UBERON:0004199!6.91e-08!7;UBERON:0004209!6.91e-08!7;UBERON:0004198!6.91e-08!7;UBERON:0005156!1.36e-07!59;UBERON:0000990!1.36e-07!59;UBERON:0003914!1.99e-07!118;UBERON:0003100!3.45e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;6.40e-28;24!UBERON:0011143;6.40e-28;24!UBERON:0006555;6.62e-28;15!UBERON:0004819;6.62e-28;15!UBERON:0001285;6.62e-28;15!UBERON:0007684;6.62e-28;15!UBERON:0004211;1.92e-26;10!UBERON:0009773;1.92e-26;10!UBERON:0001231;1.92e-26;10!UBERON:0004810;1.92e-26;10!UBERON:0000489;2.88e-22;29!UBERON:0006554;2.30e-21;30!UBERON:0001008;2.30e-21;30!UBERON:0001225;1.42e-20;12!UBERON:0008987;1.42e-20;12!UBERON:0001851;1.59e-19;15!UBERON:0000353;2.55e-19;15!UBERON:0005172;1.32e-15;52!UBERON:0005173;1.32e-15;52!UBERON:0002417;4.56e-11;58!UBERON:0000916;4.56e-11;58!UBERON:0000074;3.49e-09;7!UBERON:0001229;3.49e-09;7!UBERON:0006853;4.07e-09;3!UBERON:0007685;4.07e-09;3!UBERON:0004134;4.07e-09;3!UBERON:0005177;1.40e-07;99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006555,8.67e-30,16;UBERON:0004819,8.67e-30,16;UBERON:0002113,1.90e-28,26;UBERON:0003918,1.90e-28,26;UBERON:0011143,1.90e-28,26;UBERON:0005095,1.90e-28,26;UBERON:0007687,1.90e-28,26;UBERON:0004211,6.64e-28,15;UBERON:0009773,6.64e-28,15;UBERON:0001231,6.64e-28,15;UBERON:0001285,6.64e-28,15;UBERON:0007684,6.64e-28,15;UBERON:0004208,6.64e-28,15;UBERON:0004810,1.90e-26,10;UBERON:0005172,2.55e-23,54;UBERON:0005173,2.55e-23,54;UBERON:0000489,5.05e-23,31;UBERON:0006554,7.56e-21,47;UBERON:0001225,1.45e-20,12;UBERON:0008987,1.45e-20,12;UBERON:0001008,2.77e-20,48;UBERON:0002417,2.86e-20,60;UBERON:0000916,2.86e-20,60;UBERON:0001851,1.62e-19,15;UBERON:0000353,2.65e-19,15;UBERON:0005177,8.97e-15,101;UBERON:0009569,1.54e-12,112;UBERON:0003103,3.62e-11,68;UBERON:0005103,5.82e-11,8;UBERON:0000083,5.82e-11,8;UBERON:0009201,5.82e-11,8;UBERON:0006553,5.82e-11,8;UBERON:0003074,5.82e-11,8;UBERON:0003060,5.82e-11,8;UBERON:0000080,1.18e-09,9;UBERON:0002120,1.18e-09,9;UBERON:0004875,1.18e-09,9;UBERON:0005721,1.18e-09,9;UBERON:0005754,1.18e-09,9;UBERON:0007297,1.18e-09,9;UBERON:0010532,3.52e-09,7;UBERON:0000074,3.52e-09,7;UBERON:0001229,3.52e-09,7;UBERON:0001230,3.52e-09,7;UBERON:0003220,3.52e-09,7;UBERON:0005749,3.52e-09,7;UBERON:0004199,3.52e-09,7;UBERON:0004209,3.52e-09,7;UBERON:0004198,3.52e-09,7;UBERON:0006853,4.13e-09,3;UBERON:0007685,4.13e-09,3;UBERON:0004134,4.13e-09,3;UBERON:0003914,1.70e-08,117;UBERON:0003104,2.09e-08,160;UBERON:0009142,2.09e-08,160;UBERON:0004876,9.28e-08,11;UBERON:0003134,4.05e-07,37;UBERON:0000474,4.05e-07,37;UBERON:0000058,4.39e-07,19;UBERON:0003887,4.76e-07,12 | |||
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|short_description=p1@LRRN4 | |short_description=p1@LRRN4 | ||
}} | }} |
Latest revision as of 09:45, 17 September 2015
Short description: | p1@LRRN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRN4_5end |
Coexpression cluster: | C548_Mesothelial_mesenchymal_rhabdomyosarcoma_Renal_mesothelioma_Hepatic_clear |
Association with transcript: | 24bp_to_NM_152611, uc002wmo.2, uc002wmp.2_5end |
EntrezGene: | LRRN4 |
HGNC: | 16208 |
UniProt: | Q8WUT4Q6ZMD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.95e-32 | 17 |
kidney epithelial cell | 2.95e-32 | 17 |
epithelial cell of nephron | 6.64e-28 | 15 |
kidney tubule cell | 1.90e-26 | 10 |
nephron tubule epithelial cell | 1.90e-26 | 10 |
kidney cortical cell | 1.45e-20 | 12 |
renal cortical epithelial cell | 1.45e-20 | 12 |
mesothelial cell | 1.34e-17 | 19 |
epithelial cell | 9.48e-11 | 253 |
glomerular cell | 3.52e-09 | 7 |
kidney corpuscule cell | 3.52e-09 | 7 |
brush border epithelial cell | 4.13e-09 | 3 |
kidney cortex tubule cell | 4.13e-09 | 3 |
epithelial cell of proximal tubule | 4.13e-09 | 3 |
lining cell | 1.67e-07 | 58 |
barrier cell | 1.67e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 3.51e-15 | 27 |
reproductive organ cancer | 6.87e-14 | 29 |
ovarian cancer | 1.42e-10 | 14 |