FFCP PHASE1:Hg19::chr1:154943212..154943230,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6464 | |EntrezGene=6464 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10840 | |HGNC=10840 | ||
|TSSclassifier=strong | |||
|UniProt=B4DL02,P29353 | |UniProt=B4DL02,P29353 | ||
|association_with_transcript=0bp_to_ENST00000368443,ENST00000368445,ENST00000368449,ENST00000448116,NM_001130040,NM_183001,uc001ffv.2,uc001ffw.2_5end | |association_with_transcript=0bp_to_ENST00000368443,ENST00000368445,ENST00000368449,ENST00000448116,NM_001130040,NM_183001,uc001ffv.2,uc001ffw.2_5end | ||
|cluster_id=chr1:154943212..154943230,- | |||
|coexpression_cluster_id=C2529 | |coexpression_cluster_id=C2529 | ||
|description=CAGE_peak_1_at_SHC1_5end | |description=CAGE_peak_1_at_SHC1_5end | ||
|id=chr1:154943212..154943230,- | |id=chr1:154943212..154943230,- | ||
|ontology_enrichment_celltype=CL:0002321!1.06e-35!248;CL:0000220!1.23e-35!246;CL:0000055!1.55e-30!180;CL:0000222!3.45e-24!119;CL:0000183!4.79e-17!59;CL:0000680!4.12e-15!57;CL:0000056!4.12e-15!57;CL:0000355!4.12e-15!57;CL:0000187!1.20e-14!54;CL:0000066!7.66e-14!254;CL:0000057!8.26e-14!75;CL:0000393!7.14e-13!60;CL:0000211!7.14e-13!60;CL:0000548!2.02e-12!679;CL:0000004!2.02e-12!679;CL:0000255!2.02e-12!679;CL:0000192!2.69e-12!42;CL:0000514!2.69e-12!42;CL:0000144!1.03e-11!625;CL:0000012!1.07e-11!682;CL:0002371!6.18e-10!591;CL:0000213!1.73e-09!57;CL:0000215!1.73e-09!57;CL:0000359!1.95e-09!32;CL:0000076!1.04e-07!62;CL:0000221!1.11e-07!71;CL:0002078!3.22e-07!44 | |ontology_enrichment_celltype=CL:0002321!1.06e-35!248;CL:0000220!1.23e-35!246;CL:0000055!1.55e-30!180;CL:0000222!3.45e-24!119;CL:0000183!4.79e-17!59;CL:0000680!4.12e-15!57;CL:0000056!4.12e-15!57;CL:0000355!4.12e-15!57;CL:0000187!1.20e-14!54;CL:0000066!7.66e-14!254;CL:0000057!8.26e-14!75;CL:0000393!7.14e-13!60;CL:0000211!7.14e-13!60;CL:0000548!2.02e-12!679;CL:0000004!2.02e-12!679;CL:0000255!2.02e-12!679;CL:0000192!2.69e-12!42;CL:0000514!2.69e-12!42;CL:0000144!1.03e-11!625;CL:0000012!1.07e-11!682;CL:0002371!6.18e-10!591;CL:0000213!1.73e-09!57;CL:0000215!1.73e-09!57;CL:0000359!1.95e-09!32;CL:0000076!1.04e-07!62;CL:0000221!1.11e-07!71;CL:0002078!3.22e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:0000192;2.88e-09;43!CL:0000359;5.28e-09;32!CL:0000187;7.38e-09;55!CL:0000393;4.12e-07;61!CL:0000211;4.12e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.36e-36,250;CL:0000222,4.11e-25,121;CL:0000680,1.75e-15,58;CL:0000056,1.75e-15,58;CL:0000355,1.75e-15,58;CL:0000187,5.13e-15,55;CL:0000057,3.67e-14,76;CL:0000066,2.75e-13,253;CL:0000393,3.17e-13,61;CL:0000211,3.17e-13,61;CL:0000192,1.19e-12,43;CL:0000514,1.19e-12,43;CL:0000213,6.24e-10,58;CL:0000215,6.24e-10,58;CL:0000359,1.79e-09,32;CL:0000221,4.18e-08,72;CL:0000076,5.53e-08,63;CL:0002078,1.22e-07,45 | |||
|ontology_enrichment_development_v019=CL:0000514;2.88e-09;43!CL:0000355;8.96e-09;58!CL:0000222;1.02e-07;121 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.03e-25!365;UBERON:0000119!6.05e-23!312;UBERON:0000483!1.74e-22!309;UBERON:0005256!6.36e-21!143;UBERON:0002100!2.10e-20!216;UBERON:0000481!7.67e-20!347;UBERON:0000486!3.12e-19!82;UBERON:0002049!5.83e-18!79;UBERON:0007798!5.83e-18!79;UBERON:0003104!2.22e-17!238;UBERON:0009142!2.22e-17!238;UBERON:0000914!3.83e-17!83;UBERON:0002329!3.83e-17!83;UBERON:0003077!3.83e-17!83;UBERON:0003059!3.83e-17!83;UBERON:0007282!3.83e-17!83;UBERON:0009618!3.83e-17!83;UBERON:0007285!3.83e-17!83;UBERON:0003914!2.10e-16!118;UBERON:0000490!2.93e-16!138;UBERON:0004290!2.43e-15!70;UBERON:0000468!3.79e-15!659;UBERON:0000055!7.18e-14!69;UBERON:0000477!7.90e-14!286;UBERON:0004872!8.70e-14!84;UBERON:0001134!1.99e-13!61;UBERON:0002036!1.99e-13!61;UBERON:0003082!1.99e-13!61;UBERON:0002385!1.04e-12!63;UBERON:0001015!1.04e-12!63;UBERON:0000383!1.04e-12!63;UBERON:0000467!1.11e-12!625;UBERON:0000480!1.12e-12!626;UBERON:0001981!1.14e-12!60;UBERON:0007500!1.14e-12!60;UBERON:0004537!1.14e-12!60;UBERON:0006965!1.14e-12!60;UBERON:0003102!1.37e-12!95;UBERON:0004535!4.34e-11!110;UBERON:0000922!4.92e-11!612;UBERON:0004111!6.02e-11!241;UBERON:0002050!1.05e-10!605;UBERON:0005423!1.05e-10!605;UBERON:0000923!1.12e-10!604;UBERON:0005291!1.12e-10!604;UBERON:0006598!1.12e-10!604;UBERON:0002532!1.12e-10!604;UBERON:0001637!2.21e-10!42;UBERON:0003509!2.21e-10!42;UBERON:0004572!2.21e-10!42;UBERON:0001009!3.11e-10!113;UBERON:0005085!1.89e-09!29;UBERON:0004573!1.70e-08!33;UBERON:0004571!1.70e-08!33;UBERON:0001048!2.86e-08!168;UBERON:0001444!4.95e-08!48;UBERON:0002199!5.11e-08!45;UBERON:0002416!5.11e-08!45;UBERON:0000025!1.81e-07!194;UBERON:0005177!2.09e-07!107;UBERON:0002097!3.00e-07!40;UBERON:0009569!4.60e-07!113;UBERON:0001801!5.98e-07!14 | |ontology_enrichment_uberon=UBERON:0000475!1.03e-25!365;UBERON:0000119!6.05e-23!312;UBERON:0000483!1.74e-22!309;UBERON:0005256!6.36e-21!143;UBERON:0002100!2.10e-20!216;UBERON:0000481!7.67e-20!347;UBERON:0000486!3.12e-19!82;UBERON:0002049!5.83e-18!79;UBERON:0007798!5.83e-18!79;UBERON:0003104!2.22e-17!238;UBERON:0009142!2.22e-17!238;UBERON:0000914!3.83e-17!83;UBERON:0002329!3.83e-17!83;UBERON:0003077!3.83e-17!83;UBERON:0003059!3.83e-17!83;UBERON:0007282!3.83e-17!83;UBERON:0009618!3.83e-17!83;UBERON:0007285!3.83e-17!83;UBERON:0003914!2.10e-16!118;UBERON:0000490!2.93e-16!138;UBERON:0004290!2.43e-15!70;UBERON:0000468!3.79e-15!659;UBERON:0000055!7.18e-14!69;UBERON:0000477!7.90e-14!286;UBERON:0004872!8.70e-14!84;UBERON:0001134!1.99e-13!61;UBERON:0002036!1.99e-13!61;UBERON:0003082!1.99e-13!61;UBERON:0002385!1.04e-12!63;UBERON:0001015!1.04e-12!63;UBERON:0000383!1.04e-12!63;UBERON:0000467!1.11e-12!625;UBERON:0000480!1.12e-12!626;UBERON:0001981!1.14e-12!60;UBERON:0007500!1.14e-12!60;UBERON:0004537!1.14e-12!60;UBERON:0006965!1.14e-12!60;UBERON:0003102!1.37e-12!95;UBERON:0004535!4.34e-11!110;UBERON:0000922!4.92e-11!612;UBERON:0004111!6.02e-11!241;UBERON:0002050!1.05e-10!605;UBERON:0005423!1.05e-10!605;UBERON:0000923!1.12e-10!604;UBERON:0005291!1.12e-10!604;UBERON:0006598!1.12e-10!604;UBERON:0002532!1.12e-10!604;UBERON:0001637!2.21e-10!42;UBERON:0003509!2.21e-10!42;UBERON:0004572!2.21e-10!42;UBERON:0001009!3.11e-10!113;UBERON:0005085!1.89e-09!29;UBERON:0004573!1.70e-08!33;UBERON:0004571!1.70e-08!33;UBERON:0001048!2.86e-08!168;UBERON:0001444!4.95e-08!48;UBERON:0002199!5.11e-08!45;UBERON:0002416!5.11e-08!45;UBERON:0000025!1.81e-07!194;UBERON:0005177!2.09e-07!107;UBERON:0002097!3.00e-07!40;UBERON:0009569!4.60e-07!113;UBERON:0001801!5.98e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0002049;3.48e-08;75!UBERON:0007798;3.48e-08;75!UBERON:0003914;7.04e-08;74!UBERON:0004573;9.07e-08;33!UBERON:0004571;9.07e-08;33!UBERON:0001637;9.14e-08;42!UBERON:0003509;9.14e-08;42!UBERON:0004572;9.14e-08;42!UBERON:0010371;9.35e-08;31!UBERON:0007500;1.58e-07;56!UBERON:0001981;1.58e-07;56!UBERON:0004537;1.58e-07;56!UBERON:0000055;4.49e-07;65!UBERON:0001801;5.64e-07;14 | |||
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| ||
|short_description=p1@SHC1 | |short_description=p1@SHC1 | ||
}} | }} |
Latest revision as of 10:46, 17 September 2015
Short description: | p1@SHC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHC1_5end |
Coexpression cluster: | C2529_Mesenchymal_Corneal_Urothelial_Cardiac_salivary_Sebocyte_Esophageal |
Association with transcript: | 0bp_to_ENST00000368443, ENST00000368445, ENST00000368449, ENST00000448116, NM_001130040, NM_183001, uc001ffv.2, uc001ffw.2_5end |
EntrezGene: | SHC1 |
HGNC: | 10840 |
UniProt: | B4DL02P29353 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.36e-36 | 250 |
mesodermal cell | 4.11e-25 | 121 |
muscle precursor cell | 1.75e-15 | 58 |
myoblast | 1.75e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.75e-15 | 58 |
muscle cell | 5.13e-15 | 55 |
fibroblast | 3.67e-14 | 76 |
epithelial cell | 2.75e-13 | 253 |
electrically responsive cell | 3.17e-13 | 61 |
electrically active cell | 3.17e-13 | 61 |
smooth muscle cell | 1.19e-12 | 43 |
smooth muscle myoblast | 1.19e-12 | 43 |
lining cell | 6.24e-10 | 58 |
barrier cell | 6.24e-10 | 58 |
vascular associated smooth muscle cell | 1.79e-09 | 32 |
ectodermal cell | 4.18e-08 | 72 |
squamous epithelial cell | 5.53e-08 | 63 |
meso-epithelial cell | 1.22e-07 | 45 |