FFCP PHASE1:Hg19::chr1:156084534..156084545,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TCJ4 | |UniProt=Q5TCJ4 | ||
|association_with_transcript=17bp_to_ENST00000292302_5end | |association_with_transcript=17bp_to_ENST00000292302_5end | ||
|cluster_id=chr1:156084534..156084545,+ | |||
|coexpression_cluster_id=C1839 | |coexpression_cluster_id=C1839 | ||
|description=CAGE_peak_4_at_LMNA_5end | |description=CAGE_peak_4_at_LMNA_5end | ||
|id=chr1:156084534..156084545,+ | |id=chr1:156084534..156084545,+ | ||
|ontology_enrichment_celltype=CL:0000359;6.17e-11;32!CL:0000192;2.51e-10;43!CL:0000187;3.02e-09;55!CL:0002620;5.30e-08;23!CL:0000057;1.13e-07;73 | |ontology_enrichment_celltype=CL:0002371!9.58e-35!591;CL:0000144!1.22e-34!625;CL:0000012!4.89e-34!682;CL:0000548!1.38e-33!679;CL:0000004!1.38e-33!679;CL:0000255!1.38e-33!679;CL:0000055!3.50e-31!180;CL:0000222!3.00e-21!119;CL:0000003!5.87e-20!722;CL:0000057!9.59e-18!75;CL:0000183!1.72e-17!59;CL:0000220!1.60e-16!246;CL:0000680!3.17e-16!57;CL:0000056!3.17e-16!57;CL:0000355!3.17e-16!57;CL:0002321!8.98e-16!248;CL:0000187!1.56e-15!54;CL:0000192!1.51e-13!42;CL:0000514!1.51e-13!42;CL:0000063!1.02e-12!578;CL:0000723!9.40e-12!436;CL:0000393!1.02e-11!60;CL:0000211!1.02e-11!60;CL:0000359!1.52e-11!32;CL:0000048!1.65e-11!430;CL:0000034!1.02e-10!444;CL:0002620!5.66e-08!23 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;6.17e-11;32!CL:0000192;2.51e-10;43!CL:0000187;3.02e-09;55!CL:0002620;5.30e-08;23!CL:0000057;1.13e-07;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.09e-21,121;CL:0000057,1.29e-17,76;CL:0000680,1.53e-16,58;CL:0000056,1.53e-16,58;CL:0000355,1.53e-16,58;CL:0002321,4.86e-16,250;CL:0000187,7.62e-16,55;CL:0000192,7.71e-14,43;CL:0000514,7.71e-14,43;CL:0000723,1.76e-12,433;CL:0000048,3.00e-12,427;CL:0000393,5.76e-12,61;CL:0000211,5.76e-12,61;CL:0000359,1.34e-11,32;CL:0000034,2.39e-11,441;CL:0002620,5.23e-08,23 | |||
|ontology_enrichment_development_v019=CL:0000514;2.51e-10;43!CL:0000355;2.71e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001637;4.69e-11;42!UBERON:0003509;4.69e-11;42!UBERON:0004572;4.69e-11;42!UBERON:0004573;6.98e-10;33!UBERON:0004571;6.98e-10;33!UBERON:0007500;1.02e-09;56!UBERON:0001981;1.02e-09;56!UBERON:0004537;1.02e-09;56!UBERON:0003914;8.29e-09;74!UBERON:0000055;8.15e-08;65!UBERON:0002049;1.23e-07;75!UBERON:0007798;1.23e-07;75!UBERON:0003102;3.14e-07;50 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.28e-20!448;UBERON:0004120!6.28e-20!448;UBERON:0006603!6.28e-20!448;UBERON:0000914!2.33e-19!83;UBERON:0002329!2.33e-19!83;UBERON:0003077!2.33e-19!83;UBERON:0003059!2.33e-19!83;UBERON:0007282!2.33e-19!83;UBERON:0009618!2.33e-19!83;UBERON:0007285!2.33e-19!83;UBERON:0004290!5.86e-18!70;UBERON:0000486!5.82e-17!82;UBERON:0002049!3.16e-16!79;UBERON:0007798!3.16e-16!79;UBERON:0005256!1.90e-15!143;UBERON:0001637!3.12e-15!42;UBERON:0003509!3.12e-15!42;UBERON:0004572!3.12e-15!42;UBERON:0002204!4.02e-15!167;UBERON:0001981!8.27e-15!60;UBERON:0007500!8.27e-15!60;UBERON:0004537!8.27e-15!60;UBERON:0006965!8.27e-15!60;UBERON:0004872!1.42e-14!84;UBERON:0001134!1.49e-14!61;UBERON:0002036!1.49e-14!61;UBERON:0003082!1.49e-14!61;UBERON:0000055!2.47e-14!69;UBERON:0003914!5.29e-14!118;UBERON:0003081!1.10e-13!216;UBERON:0002385!1.19e-13!63;UBERON:0001015!1.19e-13!63;UBERON:0000383!1.19e-13!63;UBERON:0002100!2.00e-12!216;UBERON:0004535!4.32e-12!110;UBERON:0001009!1.57e-11!113;UBERON:0004573!5.24e-11!33;UBERON:0004571!5.24e-11!33;UBERON:0000490!7.75e-11!138;UBERON:0003104!1.40e-10!238;UBERON:0009142!1.40e-10!238;UBERON:0000467!2.54e-09!625;UBERON:0000480!3.84e-09!626;UBERON:0000468!4.50e-09!659;UBERON:0002199!6.08e-09!45;UBERON:0002416!6.08e-09!45;UBERON:0003102!6.83e-09!95;UBERON:0002097!9.14e-08!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.69e-11;42!UBERON:0003509;4.69e-11;42!UBERON:0004572;4.69e-11;42!UBERON:0004573;6.98e-10;33!UBERON:0004571;6.98e-10;33!UBERON:0007500;1.02e-09;56!UBERON:0001981;1.02e-09;56!UBERON:0004537;1.02e-09;56!UBERON:0003914;8.29e-09;74!UBERON:0000055;8.15e-08;65!UBERON:0002049;1.23e-07;75!UBERON:0007798;1.23e-07;75!UBERON:0003102;3.14e-07;50 | |||
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| ||
|short_description=p4@LMNA | |short_description=p4@LMNA | ||
}} | }} |
Latest revision as of 14:58, 17 September 2015
Short description: | p4@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LMNA_5end |
Coexpression cluster: | C1839_Mast_immature_Fibroblast_Mesenchymal_Hair_tenocyte_Keratocytes |
Association with transcript: | 17bp_to_ENST00000292302_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | Q5TCJ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.09e-21 | 121 |
fibroblast | 1.29e-17 | 76 |
muscle precursor cell | 1.53e-16 | 58 |
myoblast | 1.53e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.53e-16 | 58 |
embryonic cell | 4.86e-16 | 250 |
muscle cell | 7.62e-16 | 55 |
smooth muscle cell | 7.71e-14 | 43 |
smooth muscle myoblast | 7.71e-14 | 43 |
somatic stem cell | 1.76e-12 | 433 |
multi fate stem cell | 3.00e-12 | 427 |
electrically responsive cell | 5.76e-12 | 61 |
electrically active cell | 5.76e-12 | 61 |
vascular associated smooth muscle cell | 1.34e-11 | 32 |
stem cell | 2.39e-11 | 441 |
skin fibroblast | 5.23e-08 | 23 |