FFCP PHASE1:Hg19::chr13:48807288..48807302,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9445 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6174 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y287 | |||
|association_with_transcript=0bp_to_ENST00000378565_5end | |||
|cluster_id=chr13:48807288..48807302,+ | |||
|description=CAGE_peak_3_at_ITM2B_5end | |||
|id=chr13:48807288..48807302,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.01e-08!76;CL:0000791!1.29e-08!18;CL:0000789!1.29e-08!18;CL:0002420!1.29e-08!18;CL:0002419!1.29e-08!18;CL:0000790!1.29e-08!18;CL:0000738!2.37e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.33e-08;18!CL:0000789;1.33e-08;18!CL:0002419;1.33e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.50e-10,72;CL:0000791,1.29e-08,18;CL:0000789,1.29e-08,18;CL:0002420,1.29e-08,18;CL:0002419,1.29e-08,18;CL:0000790,1.29e-08,18;CL:0000738,3.65e-08,136;CL:0000557,1.11e-07,67;CL:0000839,9.23e-07,66 | |||
|ontology_enrichment_development_v019=CL:0000790;1.33e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.25e-23!115;UBERON:0001049!6.79e-13!57;UBERON:0005068!6.79e-13!57;UBERON:0006241!6.79e-13!57;UBERON:0007135!6.79e-13!57;UBERON:0002616!3.48e-11!59;UBERON:0003080!1.49e-09!42;UBERON:0002780!3.20e-09!41;UBERON:0001890!3.20e-09!41;UBERON:0006240!3.20e-09!41;UBERON:0003075!5.50e-09!86;UBERON:0007284!5.50e-09!86;UBERON:0000955!5.86e-09!69;UBERON:0006238!5.86e-09!69;UBERON:0005743!6.83e-09!86;UBERON:0001017!7.37e-09!82;UBERON:0000153!1.16e-07!129;UBERON:0007811!1.16e-07!129;UBERON:0002346!2.91e-07!90;UBERON:0000033!3.76e-07!123;UBERON:0002390!5.31e-07!102;UBERON:0003061!5.31e-07!102;UBERON:0002193!8.60e-07!112;UBERON:0001893!9.51e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.81e-07;114!UBERON:0002780;6.24e-07;41!UBERON:0001890;6.24e-07;41!UBERON:0000073;7.47e-07;53!UBERON:0002616;7.47e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.41e-23,114;UBERON:0001049,1.49e-12,56;UBERON:0005068,1.49e-12,56;UBERON:0006241,1.49e-12,56;UBERON:0007135,1.49e-12,56;UBERON:0000073,1.62e-11,53;UBERON:0002616,1.62e-11,53;UBERON:0003075,7.89e-10,82;UBERON:0007284,7.89e-10,82;UBERON:0002780,3.20e-09,41;UBERON:0001890,3.20e-09,41;UBERON:0003080,3.20e-09,41;UBERON:0006240,3.20e-09,41;UBERON:0000955,1.15e-08,68;UBERON:0006238,1.15e-08,68;UBERON:0001017,1.40e-08,81;UBERON:0002390,5.94e-08,98;UBERON:0003061,5.94e-08,98;UBERON:0002346,5.98e-08,86;UBERON:0002193,1.14e-07,108;UBERON:0010314,4.38e-07,132;UBERON:0001893,9.51e-07,34 | |||
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| |||
|short_description=p3@ITM2B | |||
}} |
Latest revision as of 14:58, 17 September 2015
Short description: | p3@ITM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ITM2B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000378565_5end |
EntrezGene: | ITM2B |
HGNC: | 6174 |
UniProt: | Q9Y287 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.50e-10 | 72 |
mature alpha-beta T cell | 1.29e-08 | 18 |
alpha-beta T cell | 1.29e-08 | 18 |
immature T cell | 1.29e-08 | 18 |
mature T cell | 1.29e-08 | 18 |
immature alpha-beta T cell | 1.29e-08 | 18 |
leukocyte | 3.65e-08 | 136 |
granulocyte monocyte progenitor cell | 1.11e-07 | 67 |
myeloid lineage restricted progenitor cell | 9.23e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.41e-23 | 114 |
neural tube | 1.49e-12 | 56 |
neural rod | 1.49e-12 | 56 |
future spinal cord | 1.49e-12 | 56 |
neural keel | 1.49e-12 | 56 |
regional part of nervous system | 1.62e-11 | 53 |
regional part of brain | 1.62e-11 | 53 |
neural plate | 7.89e-10 | 82 |
presumptive neural plate | 7.89e-10 | 82 |
regional part of forebrain | 3.20e-09 | 41 |
forebrain | 3.20e-09 | 41 |
anterior neural tube | 3.20e-09 | 41 |
future forebrain | 3.20e-09 | 41 |
brain | 1.15e-08 | 68 |
future brain | 1.15e-08 | 68 |
central nervous system | 1.40e-08 | 81 |
hematopoietic system | 5.94e-08 | 98 |
blood island | 5.94e-08 | 98 |
neurectoderm | 5.98e-08 | 86 |
hemolymphoid system | 1.14e-07 | 108 |
structure with developmental contribution from neural crest | 4.38e-07 | 132 |
telencephalon | 9.51e-07 | 34 |