FFCP PHASE1:Hg19::chr2:161056820..161056825,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3694 | |EntrezGene=3694 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6161 | |HGNC=6161 | ||
|TSSclassifier=strong | |||
|UniProt=F8WBJ8,P18564 | |UniProt=F8WBJ8,P18564 | ||
|association_with_transcript=-5bp_to_ENST00000409583,ENST00000409872,uc010fov.1_5end | |association_with_transcript=-5bp_to_ENST00000409583,ENST00000409872,uc010fov.1_5end | ||
|cluster_id=chr2:161056820..161056825,- | |||
|coexpression_cluster_id=C1497 | |coexpression_cluster_id=C1497 | ||
|description=CAGE_peak_4_at_ITGB6_5end | |description=CAGE_peak_4_at_ITGB6_5end | ||
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|ontology_enrichment_celltype=CL:0002076!1.49e-27!43;CL:0000066!1.77e-19!254;CL:0000223!9.70e-19!59;CL:0002368!4.35e-15!13;CL:0002251!1.01e-10!21;CL:0002202!8.17e-10!9;CL:0002632!8.17e-10!9;CL:0002159!5.73e-07!13;CL:0000082!7.03e-07!19 | |ontology_enrichment_celltype=CL:0002076!1.49e-27!43;CL:0000066!1.77e-19!254;CL:0000223!9.70e-19!59;CL:0002368!4.35e-15!13;CL:0002251!1.01e-10!21;CL:0002202!8.17e-10!9;CL:0002632!8.17e-10!9;CL:0002159!5.73e-07!13;CL:0000082!7.03e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.72e-15;42!CL:0000349;2.27e-12;19!CL:0002368;2.82e-11;13!CL:0002621;2.31e-09;3!CL:0002166;4.93e-09;3!CL:0002577;9.84e-09;3!CL:0002159;3.23e-08;14!CL:0000307;3.76e-08;3!CL:0002251;4.96e-07;20!CL:0002202;9.19e-07;9!CL:0002632;9.19e-07;9 | |ontology_enrichment_celltype_v019=CL:0002076;3.72e-15;42!CL:0000349;2.27e-12;19!CL:0002368;2.82e-11;13!CL:0002621;2.31e-09;3!CL:0002166;4.93e-09;3!CL:0002577;9.84e-09;3!CL:0002159;3.23e-08;14!CL:0000307;3.76e-08;3!CL:0002251;4.96e-07;20!CL:0002202;9.19e-07;9!CL:0002632;9.19e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.57e-19,42;CL:0000066,3.18e-18,253;CL:0000223,1.19e-13,58;CL:0000349,3.03e-12,19;CL:0002368,2.57e-11,13;CL:0002621,2.30e-09,3;CL:0002166,4.84e-09,3;CL:0002577,1.23e-08,3;CL:0002159,4.01e-08,14;CL:0000068,6.42e-08,3;CL:0000069,6.42e-08,3;CL:0000307,6.42e-08,3;CL:0000377,6.42e-08,3;CL:0002251,6.85e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000377;3.76e-08;3!CL:0000223;5.16e-08;58 | |ontology_enrichment_development_v019=CL:0000377;3.76e-08;3!CL:0000223;5.16e-08;58 | ||
|ontology_enrichment_disease=DOID:1749!8.55e-16!14;DOID:305!1.62e-09!106 | |ontology_enrichment_disease=DOID:1749!8.55e-16!14;DOID:305!1.62e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.85e-10;14 | |ontology_enrichment_disease_v019=DOID:1749;5.85e-10;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,3.64e-10,14;DOID:305,3.70e-07,106 | |||
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| ||
|short_description=p4@ITGB6 | |short_description=p4@ITGB6 | ||
}} | }} |
Latest revision as of 19:45, 17 September 2015
Short description: | p4@ITGB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ITGB6_5end |
Coexpression cluster: | C1497_amniotic_Mallassezderived_Prostate_Urothelial_papillotubular_Gingival_Amniotic |
Association with transcript: | -5bp_to_ENST00000409583, ENST00000409872, uc010fov.1_5end |
EntrezGene: | ITGB6 |
HGNC: | 6161 |
UniProt: | F8WBJ8P18564 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.57e-19 | 42 |
epithelial cell | 3.18e-18 | 253 |
endodermal cell | 1.19e-13 | 58 |
extraembryonic cell | 3.03e-12 | 19 |
respiratory epithelial cell | 2.57e-11 | 13 |
gingival epithelial cell | 2.30e-09 | 3 |
epithelial cell of Malassez | 4.84e-09 | 3 |
placental epithelial cell | 1.23e-08 | 3 |
general ecto-epithelial cell | 4.01e-08 | 14 |
duct epithelial cell | 6.42e-08 | 3 |
branched duct epithelial cell | 6.42e-08 | 3 |
tracheal epithelial cell | 6.42e-08 | 3 |
tracheoblast | 6.42e-08 | 3 |
epithelial cell of alimentary canal | 6.85e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.08e-21 | 14 |
membranous layer | 8.08e-21 | 14 |
endoderm-derived structure | 3.78e-18 | 160 |
endoderm | 3.78e-18 | 160 |
presumptive endoderm | 3.78e-18 | 160 |
chorion | 1.51e-12 | 7 |
digestive system | 4.10e-12 | 145 |
digestive tract | 4.10e-12 | 145 |
primitive gut | 4.10e-12 | 145 |
extraembryonic structure | 4.91e-11 | 24 |
thoracic cavity element | 1.29e-10 | 34 |
thoracic cavity | 1.29e-10 | 34 |
placenta | 1.72e-10 | 4 |
allantois | 1.72e-10 | 4 |
thoracic segment organ | 3.21e-10 | 35 |
amnion | 5.30e-10 | 7 |
biliary system | 2.07e-09 | 9 |
biliary tree | 2.07e-09 | 9 |
biliary bud | 2.07e-09 | 9 |
gingival epithelium | 2.30e-09 | 3 |
endo-epithelium | 4.96e-09 | 82 |
somatic layer of lateral plate mesoderm | 1.10e-08 | 8 |
subdivision of digestive tract | 2.09e-08 | 118 |
respiratory system | 2.22e-08 | 74 |
organ component layer | 2.31e-08 | 66 |
small intestine | 2.88e-08 | 4 |
epithelium of mucosa | 3.26e-08 | 8 |
gallbladder | 3.83e-08 | 3 |
gall bladder primordium | 3.83e-08 | 3 |
epithelial bud | 4.05e-08 | 37 |
trunk region element | 1.04e-07 | 101 |
jaw skeleton | 7.54e-07 | 4 |
splanchnocranium | 7.54e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.64e-10 | 14 |
carcinoma | 3.70e-07 | 106 |