FFCP PHASE1:Hg19::chr8:27491533..27491544,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51435 | |EntrezGene=51435 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19000 | |HGNC=19000 | ||
|TSSclassifier=strong | |||
|UniProt=Q6AZY7 | |UniProt=Q6AZY7 | ||
|association_with_transcript=-32bp_to_NM_016240,NM_182826,uc003xga.1,uc003xgb.1_5end | |association_with_transcript=-32bp_to_NM_016240,NM_182826,uc003xga.1,uc003xgb.1_5end | ||
|cluster_id=chr8:27491533..27491544,+ | |||
|description=CAGE_peak_3_at_SCARA3_5end | |description=CAGE_peak_3_at_SCARA3_5end | ||
|id=chr8:27491533..27491544,+ | |id=chr8:27491533..27491544,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.22e-10!180 | |ontology_enrichment_celltype=CL:0000055!1.22e-10!180 | ||
|ontology_enrichment_celltype_v019=CL:0000327;1.15e-10;15!CL:0000708;1.73e-08;3!CL:0002582;2.31e-08;3!CL:0000153;5.59e-08;9!CL:0000447;5.59e-08;9!CL:0002570;1.83e-07;8!CL:0000499;2.07e-07;28!CL:0002577;8.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000327,6.34e-11,15;CL:0000708,1.81e-08,3;CL:0002582,2.84e-08,3;CL:0000153,2.84e-08,9;CL:0000447,2.84e-08,9;CL:0000499,1.16e-07,28;CL:0002570,1.95e-07,8;CL:0002577,4.41e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;8.12e-07;3!UBERON:0003057;8.12e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.51e-18!82;UBERON:0003075!1.92e-18!86;UBERON:0007284!1.92e-18!86;UBERON:0005743!4.77e-18!86;UBERON:0002346!1.66e-17!90;UBERON:0000073!4.52e-16!94;UBERON:0001016!4.52e-16!94;UBERON:0004121!8.40e-14!169;UBERON:0000955!1.55e-13!69;UBERON:0006238!1.55e-13!69;UBERON:0000924!2.09e-13!173;UBERON:0006601!2.09e-13!173;UBERON:0002616!2.90e-13!59;UBERON:0001049!5.30e-13!57;UBERON:0005068!5.30e-13!57;UBERON:0006241!5.30e-13!57;UBERON:0007135!5.30e-13!57;UBERON:0000153!8.76e-13!129;UBERON:0007811!8.76e-13!129;UBERON:0000033!9.09e-13!123;UBERON:0003056!1.09e-10!61;UBERON:0000119!5.85e-10!312;UBERON:0000477!1.62e-09!286;UBERON:0007023!5.77e-09!115;UBERON:0000483!6.13e-09!309;UBERON:0000481!8.39e-09!347;UBERON:0000064!1.08e-08!219;UBERON:0003076!3.15e-08!15;UBERON:0003057!3.15e-08!15;UBERON:0000468!9.57e-08!659;UBERON:0000475!1.14e-07!365;UBERON:0002020!1.32e-07!34;UBERON:0003528!1.32e-07!34;UBERON:0002780!1.42e-07!41;UBERON:0001890!1.42e-07!41;UBERON:0006240!1.42e-07!41;UBERON:0002200!1.93e-07!11;UBERON:0006876!1.93e-07!11;UBERON:0001893!2.36e-07!34;UBERON:0002791!3.52e-07!33;UBERON:0003080!3.70e-07!42;UBERON:0004732!4.59e-07!13;UBERON:0001869!9.00e-07!32 | |ontology_enrichment_uberon=UBERON:0001017!1.51e-18!82;UBERON:0003075!1.92e-18!86;UBERON:0007284!1.92e-18!86;UBERON:0005743!4.77e-18!86;UBERON:0002346!1.66e-17!90;UBERON:0000073!4.52e-16!94;UBERON:0001016!4.52e-16!94;UBERON:0004121!8.40e-14!169;UBERON:0000955!1.55e-13!69;UBERON:0006238!1.55e-13!69;UBERON:0000924!2.09e-13!173;UBERON:0006601!2.09e-13!173;UBERON:0002616!2.90e-13!59;UBERON:0001049!5.30e-13!57;UBERON:0005068!5.30e-13!57;UBERON:0006241!5.30e-13!57;UBERON:0007135!5.30e-13!57;UBERON:0000153!8.76e-13!129;UBERON:0007811!8.76e-13!129;UBERON:0000033!9.09e-13!123;UBERON:0003056!1.09e-10!61;UBERON:0000119!5.85e-10!312;UBERON:0000477!1.62e-09!286;UBERON:0007023!5.77e-09!115;UBERON:0000483!6.13e-09!309;UBERON:0000481!8.39e-09!347;UBERON:0000064!1.08e-08!219;UBERON:0003076!3.15e-08!15;UBERON:0003057!3.15e-08!15;UBERON:0000468!9.57e-08!659;UBERON:0000475!1.14e-07!365;UBERON:0002020!1.32e-07!34;UBERON:0003528!1.32e-07!34;UBERON:0002780!1.42e-07!41;UBERON:0001890!1.42e-07!41;UBERON:0006240!1.42e-07!41;UBERON:0002200!1.93e-07!11;UBERON:0006876!1.93e-07!11;UBERON:0001893!2.36e-07!34;UBERON:0002791!3.52e-07!33;UBERON:0003080!3.70e-07!42;UBERON:0004732!4.59e-07!13;UBERON:0001869!9.00e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.04e-09;8!UBERON:0000982;2.04e-09;8!UBERON:0004770;2.04e-09;8!UBERON:0002203;4.32e-09;6!UBERON:0001768;4.32e-09;6!UBERON:0002200;4.32e-09;6!UBERON:0003210;1.73e-08;3!UBERON:0011135;3.32e-07;5!UBERON:0002216;3.32e-07;5!UBERON:0011134;3.32e-07;5!UBERON:0002209;3.32e-07;5!UBERON:0002213;3.32e-07;5!UBERON:0007844;3.32e-07;5!UBERON:0011138;3.32e-07;5!UBERON:0001130;3.32e-07;5!UBERON:0001066;3.32e-07;5!UBERON:0001468;3.32e-07;5!UBERON:0001896;8.12e-07;3!UBERON:0002240;8.12e-07;3!UBERON:0005174;8.12e-07;3!UBERON:0005290;8.12e-07;3!UBERON:0001137;8.12e-07;3!UBERON:0001801;8.16e-07;14!UBERON:0006876;9.21e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002203,1.34e-09,6;UBERON:0001768,1.34e-09,6;UBERON:0002200,1.34e-09,6;UBERON:0004905,4.51e-09,8;UBERON:0000982,4.51e-09,8;UBERON:0004770,4.51e-09,8;UBERON:0003210,1.81e-08,3;UBERON:0003075,2.00e-08,82;UBERON:0007284,2.00e-08,82;UBERON:0003076,5.24e-08,15;UBERON:0003057,5.24e-08,15;UBERON:0002346,8.93e-08,86;UBERON:0006876,4.47e-07,11;UBERON:0001896,5.46e-07,3;UBERON:0005290,5.46e-07,3;UBERON:0010096,5.46e-07,3;UBERON:0001801,5.93e-07,14;UBERON:0011135,8.29e-07,5;UBERON:0002216,8.29e-07,5;UBERON:0011134,8.29e-07,5;UBERON:0002209,8.29e-07,5;UBERON:0002213,8.29e-07,5;UBERON:0005856,8.29e-07,5;UBERON:0005866,8.29e-07,5;UBERON:0005863,8.29e-07,5;UBERON:0007844,8.29e-07,5;UBERON:0011138,8.29e-07,5;UBERON:0001130,8.29e-07,5;UBERON:0001066,8.29e-07,5;UBERON:0001468,8.29e-07,5;UBERON:0001017,9.54e-07,81 | |||
|phase1_expression=0,0,0.281908808191942,0,0.446961094427288,0.872338524100369,0,1.89515962028049,0,0.491467873003018,0,1.09220686065086,1.58260186937072,1.11389717664042,3.97676850873499,0,1.80808358407193,0.730310090387373,0.487932798790507,2.21617904538218,9.18003110599138,0.940364164434263,1.43117993565528,1.09499540058307,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,1.44575660953827,0.50133791063589,1.44846518960824,1.5905718941022,1.45990461090791,1.70162670895322,0.886917589850256,1.93236528524877,0.327447688744282,0.364295288292542,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0.258416759169329,0,0,0.402829317109147,0,1.22031028774085,0.367663080345869,0,0.982297011124877,0,0.788280363383256,0,0,0.183201743930407,0,0,0,0,0,0,0.573673241497627,0,1.12135520028461,0,0.49333509683432,0.311211035399766,0.134710672069688,0.163461903113459,0.756787138224657,0.576175924479999,0.468642863667593,0,0,0.298897361103602,0.352303495931295,0.161872944368132,0.140450806702248,0.204154171254893,0.368502951935304,0,0,0,0,0.718618141816238,0.336672227908132,0.500474079487857,0,0.438977620880838,0,0.751190294532984,0.113432183160021,0.538168907066586,0,0,0.900273288253207,0.412210116953756,0.257640540045629,0,1.68776332241266,0.779496041289589,0,0,1.2931684545505,2.13005755509969,0.403008392910561,0,0,0,0,0,0,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,0.354920400119532,0,0,0.441175890929576,0.217879444092406,0.71181185733329,0.404493924480493,0,0,0,0,0.4115740113314,0,0,0,0,0,0,1.54411029268673,0,0,0,0.0925884451585296,0.651616610620649,2.07986957055916,0,1.04337364477569,0.587043471179108,0.577465791044295,0,0.380508304469197,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.49442313292267,3.48768055066624,7.6271817253788,0.129271715757778,0,0,0,0,1.28603687131071,1.41849132023278,2.66422179016099,0,0,1.64648067356154,0.325736184293735,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0.479249710983165,6.89171615004683,0,0,0.61642896765115,0.179060963239896,0,0,0,0,1.27047312111232,3.90419561572865,1.54657762555539,0.837581326671744,0.637938751653163,0,0,0,1.2269149171914,1.00034104211935,0.271265023699736,0.415941723061614,0.178428988797162,0,0,1.80567659836631,2.27407504055985,1.03473071292505,3.32112799267718,1.10621501125022,0.434418072340414,3.72022199179207,3.77457766191941,0,0,0,1.81876542867756,1.66435439510497,1.20956117331872,0.248107807818777,0.61384789315225,0.561320188866147,0.768834895534206,0,0.160853921143607,0,2.92998418225046,2.66342587969691,7.63782550928425,2.07701771673448,5.22946703069817,0.241718899183244,0.200506470303285,0,0.114814448164607,0.364182336013434,0.393373244878272,0.451199612907412,0.231046011313244,0.784349769176855,0,0.316654886678627,0,0,0,0,0.812839312631559,0,0,0,0.447749509444357,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0.676695028044854,1.23238893691716,0.614014698904518,0.551346289938122,0.429680979473094,1.0151168573996,0.596586391912706,0.623224249527161,0,0,0,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,2.60510858551767,0.632758849437452,0.190630193923825,0.767693373934002,0,0.318203247925937,0,0.179872457583315,0,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0.731140468893853,0,0.545999645631943,0.282810863907425,0,0,0,0,1.73632660280006,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,2.74439925886963,1.31717957183961,2.27683904259429,2.79947776195986,0,0,0,0.0941438007767792,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0.18714054040822,0.146508179271894,0.121360521749513,0,0,0.47748896947538,0.890894042497916,0.307160702099232,0,0.703347082052564,0.445234820091624,0,0.211125408127993,0.597743964753209,0.276283915531148,0.755798243562828,0.409074730008619,0,0,0,0,0,0,0,0,0,0.556608588971108,0,0,0.0874599999961957,0,0.1137934482855,0,0.945550727071745,0,0,0.520874984799877,2.65722415744152,1.32656082487949,0,0.774054819518572,0.591095237907095,1.31631238292384,0,0,0.384751292518985,0,0,0.448788222048861,0.54323685961004,0,1.28236630762607,0.533034776018635,0,0,0.166211681900156,0,0,0,0,0,0,0.163232808159148,0.282706142867882,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.606610196826093,0,0.702793337176017,0,0.19566461893209,0,0.789168805698781,0,0.30607276163049,2.90658266291045,0,0.103688191397247,0,0,0,0,0,0,0.347119476670262,0,0.0870592065804026,0.17472666824203,0,0.677294319023596,0.292357268344742,0.328461828212837,0.193978032976839,0,0.225980740780532,0,0,0.633107959558787,0.195551382734803,0,0.85381197895741,0.19980960958213,0,0,0.343189995723929,0,0.124252535565433,0,0.543616824294456,0.418411385249333,0.203996435272644,0,0,0.136905378891993,0,0,0,0.837847203816763,0.45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| ||
|short_description=p3@SCARA3 | |short_description=p3@SCARA3 | ||
}} | }} |
Latest revision as of 19:55, 17 September 2015
Short description: | p3@SCARA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCARA3_5end |
Coexpression cluster: | NA |
Association with transcript: | -32bp_to_NM_016240, NM_182826, uc003xga.1, uc003xgb.1_5end |
EntrezGene: | SCARA3 |
HGNC: | 19000 |
UniProt: | Q6AZY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extracellular matrix secreting cell | 6.34e-11 | 15 |
leptomeningeal cell | 1.81e-08 | 3 |
visceral preadipocyte | 2.84e-08 | 3 |
GAG secreting cell | 2.84e-08 | 9 |
carbohydrate secreting cell | 2.84e-08 | 9 |
stromal cell | 1.16e-07 | 28 |
mesenchymal stem cell of adipose | 1.95e-07 | 8 |
placental epithelial cell | 4.41e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of eye | 1.34e-09 | 6 |
uvea | 1.34e-09 | 6 |
vasculature of head | 1.34e-09 | 6 |
articulation | 4.51e-09 | 8 |
skeletal joint | 4.51e-09 | 8 |
articular system | 4.51e-09 | 8 |
blood-cerebrospinal fluid barrier | 1.81e-08 | 3 |
neural plate | 2.00e-08 | 82 |
presumptive neural plate | 2.00e-08 | 82 |
posterior neural tube | 5.24e-08 | 15 |
chordal neural plate | 5.24e-08 | 15 |
neurectoderm | 8.93e-08 | 86 |
vasculature of organ | 4.47e-07 | 11 |
medulla oblongata | 5.46e-07 | 3 |
myelencephalon | 5.46e-07 | 3 |
future myelencephalon | 5.46e-07 | 3 |
anterior segment of eyeball | 5.93e-07 | 14 |
intervertebral cartilage | 8.29e-07 | 5 |
symphysis | 8.29e-07 | 5 |
nonsynovial joint | 8.29e-07 | 5 |
fibrous joint | 8.29e-07 | 5 |
cartilaginous joint | 8.29e-07 | 5 |
developing mesenchymal condensation | 8.29e-07 | 5 |
pre-cartilage condensation | 8.29e-07 | 5 |
cartilaginous condensation | 8.29e-07 | 5 |
cartilage element | 8.29e-07 | 5 |
post-cranial axial skeletal system | 8.29e-07 | 5 |
vertebral column | 8.29e-07 | 5 |
intervertebral disk | 8.29e-07 | 5 |
intervertebral joint | 8.29e-07 | 5 |
central nervous system | 9.54e-07 | 81 |